Coregonus clupeaformis (lake whitefish): 121550486
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Entry
121550486 CDS
T08357
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121550486
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121550486
03041 Spliceosome [BR:
cclu03041
]
121550486
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
121550486
Spliceosome [BR:
cclu03041
]
Complex B
Other components
Prp19-related factors
121550486
Complex C
121550486
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_8
TPR_12
TPR_15
TPR_16
ARM_TT21_C
ARM_TT21
NRDE-2
SNAP
TPR_1
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
121550486
NCBI-ProteinID:
XP_041718687
LinkDB
All DBs
Position
35:2119307..2140182
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AA seq
852 aa
AA seq
DB search
MPSLNGKPDVLFEEDDLPYEEEIIRNPYSVKCWMRYIEFKQNGAKSILNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITEPAYEEINNCHERALVFMHKMPRIWLDYCQFLVSQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPENAEEYID
YLHSCGKLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVNSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSELGKDEEEDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGKPRQIINTYTEAVQTVDPMKATGKPSSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAGVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDVSEPVQNRVYKSLK
VWSMLADLEESMGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGTKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
FGLARHAMAVYERATQAVDKTERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHSR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRMTATFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMMKATTNATGTISDLAPGQMGLDDMKLLEQQAQQLAAEAEQ
DKPKLKEKILFVRSDTSRSELAELAKQANPDEIDIDDEDGDGDDEDQGPEEVQLEQKSVP
TAVFGGLKEGED
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgccgtctctaaatgggaaaccggacgtcctgtttgaggaagatgacctgccttatgag
gaggagatcatcaggaatccgtactcggtcaagtgctggatgcgctacatcgaattcaaa
cagaacggcgccaagtccatcctcaacatgatctatgaacgagctctgaaagagctacct
ggcagttacaagttatggtacaactatctgagagagagacggaaacaggtcaaagggaag
tgcatcacggagccagcctatgaggagatcaacaactgccatgaaagagcactggttttc
atgcacaagatgccgaggatatggctggactactgccagttcctggtgtctcaatgtaag
atcaccaggagcagacgcacgtttgaccgagcactccgagccctgcccgtcactcagcac
cctcgcatctggcccctgtacctccgctttgcccggaacctgcccctgcctgagaccgcc
atccgtgtctatcgcaggtacctcaagctgtccccagagaatgcagaggagtacatagat
tacctgcattcctgcggtaagctggatgaagctgcagtgcgtctggcagccgttgtcaac
gatgagagttttgtgtccaaggagggcaagtctaactaccagctatggcacgagctgtgt
gacctgatctctcagaacccagacaaggtgaactctctgaatgttggggccatcatccgt
ggaggcctcactcgcttcacagaccagctgggcaaactctggtgctccctggctgactac
tacatccgcagtggacattttgaaaaggctcgtgatgtgtatgaggaggccatcttgacg
gtggtgacggtgagagatttcacccaggtgttcgacagctacgcccagtttgaggagagc
atgatcgctgccaagatggagactacctccgagctggggaaagatgaagaagaggacata
gacctggagctgcgtctggcccgctttgagcagctgatcgcccgcaggcccctcctgctg
aacagtgtgctgctgagacagaacccccacaacgtccacgagtggcataagagggtcaaa
ctgtacgaggggaaaccacgacagatcatcaacacctacacagaggcagttcagactgtg
gaccctatgaaggctacagggaaacccagctctctctgggtctccttcgccaagttctac
gaggagaacgagcagctagacgacgcgcggaccatctttgagaaggccaccaaggtgaac
tacaaacaggttgacgacctggctggcgtgtggtgtgaatacggagagatggagctacgc
catgagaactacgaacaggcgctacgtatactgaggaaagcaactgccatcccgtccaaa
aaggccgagtactttgacgtgtcagagccagtgcagaacagagtgtacaagtctctgaag
gtctggtccatgttggctgacctggaggagagtatgggaaccttccagtccaccaaggcg
gtgtacgaccgcatcattgacctgcgcattgccacgccccagataatcatcaactacgcc
atgttcctggaggagcacaactactttgaggagagtttcaaggcgtacgagcgtggcatc
gccctcttcaggtggcccaacgtctatgacatctggaacacgtaccttaccaagttcatc
gaccgctacgggggcacgaagctggagagggcccgggacctgtttgagcaggcgctggac
ggctgtccagccaagttcgccaagaccatctacctgctgtacgccaaactggaggaggag
tttgggttggcgcgtcacgcaatggcggtgtacgagagagccacgcaggcggtggacaaa
acggagaggcatcacatgttcaacatctacatcaagagggctgcagagatctacggagtc
acctacaccagagctatctaccagaaagccatcgaggtgcttccagacgaacactccagg
gacatgtgcctgcgcttcgctgacatggagagcaaactgggcgagatcgaccgggccaga
gccatctactcctactgctcccagatctgtgaccccaggatgacggccacgttctggcag
acatggaaggagtttgagatccgccacgggaacgaagacacgatccgtgagatgctgagg
atcaagcgcagcgtccaggccacgtacaacacacaggtcaacttcatgtcctcgcagatg
atgaaggccactaccaacgccaccggcaccatctcagaccttgccccgggccagatgggg
ctggatgatatgaagctgttggagcagcaggcccaacagctggccgccgaggctgaacag
gacaaacccaaactcaaagagaagatcctcttcgtcaggagtgacacgtctcgcagcgag
ctagctgaactggccaaacaagccaaccctgatgagattgatattgatgatgaggatggt
gatggtgatgatgaagaccagggcccagaggaggtgcagctggaacagaagagcgtcccc
actgctgtctttggagggctgaaagaaggggaagattga
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