Coregonus clupeaformis (lake whitefish): 121550528
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Entry
121550528 CDS
T08357
Name
(RefSeq) ubiquitin-protein ligase E3B isoform X1
KO
K10588
ubiquitin-protein ligase E3 B [EC:
2.3.2.26
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121550528
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121550528
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
121550528
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
HECT type E3
121550528
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
IQ
DUF7462
Motif
Other DBs
NCBI-GeneID:
121550528
NCBI-ProteinID:
XP_041718750
LinkDB
All DBs
Position
18:complement(22449238..22466914)
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AA seq
1067 aa
AA seq
DB search
MFSATQSSKSEFLDKARQAREERKGYKERDRAATLIQALVRRFLCRCRLQKQIRKEVDDF
FQDAGTTKRNALSIFKIARKLLFIFCQDDKLMFEKLCRSILGSMEVENEPKVWYVSLALS
KDLTIPWIKQIKDVLWVSCQFLKKLKPDIMQDNKLVTLYLTMLVTFTDTSTWKIVRGKGE
ALRPALTRICENIMGHLNQKGFYSILQILLTNGLARSRPSLTKGTLTAVFTLALRPVIAA
HFSDNLLRSLLIHIMSVPAVVSHIYTITPECMTTIQTHDLLRKFILFLSREEQCVDICVC
LEGSHTLCLLGNLIHLGYLNEKVLEEEANHFVKDLTDMLSYCQRYVSQKKSNLTHWHPVL
GWFSQTVDYGLNESMPLVTKQLQYLWGMPVIRTLFSDVLSKKLETQEPTPPPQPQPTTSQ
NNLPVKSLFKRAFQKSASVRNILKPVGGRRVDSAEVQKVCSICVLYQTALTTLTQIRLQI
LTGLTYLDDLLPKLWAFICELGPQGGLKLFMECLNNDTEESKQLLAMLMLFCDCSRHLIT
ILDDIEVYEEQISFKTEELVTISSFLNTFVYKMVWDGILENAKGEKLDLFHSVHGWLMVL
YERDCRRRFSPDDNWLRKDLKPSLLFQELEKGKRRAQLLLQYIPHVIPHKNRVLLFRNIV
TKEKETLGLVETSSASPHVTHITIRRSRMLEDGYDQLRRLPVNSIKGVIRVKFVNDLGVD
EAGIDQDGVFKEFLEEIIKKVFNPALNLFKTTSGNERLYPSPTSYIHENHLQLFEFVGKM
LGKAMYEGIVVDVPFASFFLSQVMGHHHSTFYSSIDELPSLDSEFYKNLTSIKRYDGDVG
DLGLTLSYDEDVMGQLVCHELIPGGKTMTVTNENKISYIHLMAHFRMHTQIKEQTAAFIR
GFRSIINPEWLHMFSTPEVQRLVSGDNAEIDLDDLKKHTVYYGGFHSSHRVIIWLWDILS
SDFSSEERAMFLKFVTSCSRPPLLGFAYLKPPFSIRCVEVSDDQDTGDTLGSVLRGFFTI
RKKEPGGRLPTSSTCFNLLKLPNYSKKSILRDKLRYAISMNTGFELS
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atgtttagtgcaactcagagttccaagtctgagttcctggacaaagccaggcaggcgcgt
gaggagaggaaggggtacaaagaaagggaccgagcagccaccctaattcaagcgctggtc
aggagattcctctgtcgctgcagactccagaaacaaataaggaaagaggttgatgacttt
ttccaagatgccgggaccacaaaaagaaatgcactatccatttttaaaattgcacggaag
ttgttattcattttttgccaagatgataagctgatgtttgagaagctttgtcgctccatt
cttggcagtatggaggttgaaaatgagcccaaagtttggtatgtgtcattagccctttct
aaagacctcaccattccttggatcaagcagattaaagatgttctgtgggtctcctgtcag
ttcctgaaaaaattaaagcctgacatcatgcaggacaataagctggtgactctgtacctc
accatgctggtgaccttcacagacacatcaacctggaagatagtgagagggaaaggcgag
gccctcagaccagcgttgacccggatctgtgagaacatcatggggcatctcaatcaaaag
ggattttattcaatactgcagattctactcaccaacggattggcacgctccaggccctct
cttaccaagggcacactcacagcagtattcacgctggcattaagacctgtcattgctgct
cacttctctgacaacctgctgaggtctctcctcatccacatcatgtctgtcccagcagtc
gtctcccacatctacaccatcaccccagagtgcatgaccaccatccagacccacgacctg
ttgaggaagttcatcctgttccttagccgcgaggagcagtgtgtcgacatctgtgtctgc
ctggaggggagccacacactgtgcttactgggtaacctgattcacctgggctacctcaac
gagaaagtcctggaggaggaggccaaccactttgtgaaggacctgacggacatgctgtcc
tactgccagagatacgtgtcccagaagaaatctaacctcacccactggcaccccgtcctg
ggctggttctcccaaaccgtagactatggtctgaatgagtccatgccactggtcaccaag
cagctgcagtacctgtggggcatgcctgtgatccggacgctcttcagtgacgtccttagc
aaaaagctggagacccaagagcccacgcctccaccacagccacagcctaccacgtcgcaa
aacaacctgccagtcaagagtctcttcaagcgggcatttcagaagtctgcctcagtgcga
aacatcctgaagccagttggcgggagacgggtggactccgctgaggttcagaaagtgtgc
agcatctgtgtactgtaccagacagccctcaccacgctcacccagatacgactgcaaatc
ctcactggcctaacctacctggacgacctgctgcctaagctgtgggccttcatctgcgag
ctaggaccccaaggagggctcaagctgttcatggagtgcctgaacaacgacacagaggag
tctaagcagctgctggccatgctcatgctgttctgcgactgctccagacacctcatcacg
atcctggatgacattgaggtttacgaggagcagatctcgtttaagacggaagagctcgtc
accatctcctcgtttctcaacacgtttgtttacaagatggtctgggacggcatcttagag
aatgctaagggagagaagctggacctgttccacagcgttcacggctggctgatggtgctt
tacgagcgggactgcaggaggaggttctcccctgatgacaactggctgcgcaaggatctg
aagccgagccttttgttccaagaactggagaagggcaagaggagagctcagctgttactt
cagtacatcccacacgtcattccacacaaaaacagggtcctgctgttccggaacattgtc
accaaggagaaggaaaccttgggattggtggagaccagctccgcctctccgcatgtcacc
catatcaccattcgccgctcgcggatgttagaggatggttacgaccagctccgccggttg
cccgtcaactccatcaaaggtgtgatccgcgtgaagtttgtcaatgacctgggtgtggac
gaggccggcatcgaccaggacggcgtcttcaaggagttcctggaagagatcatcaagaaa
gtcttcaatccggcactcaacctctttaagaccaccagtggcaacgagagactgtacccc
tcccctacgtcctacatccacgagaaccacctgcagctctttgagtttgtggggaagatg
ctcggcaaagccatgtatgagggtatcgtggtagacgtacccttcgcctccttcttcctc
agccaggtcatgggtcaccaccacagcaccttctacagctccatcgacgaactgccctcc
ctggactctgagttctacaagaacctcacctccatcaagcgctacgacggggatgttggt
gatctgggactgacgctatcgtatgacgaggatgttatgggacagctggtctgtcatgag
ctgattcctggaggaaagacgatgacagtcaccaatgaaaacaagatcagctacatccac
ctgatggcgcacttccgcatgcacacgcagataaaagagcaaacggcagctttcatccga
gggttccgcagcatcatcaacccggagtggctgcacatgttctccactcccgaggtccag
cgcctcgtctccggggacaacgccgagatagacttggacgacctcaagaaacacacagtg
tactatggaggtttccacagcagccatcgggtcatcatctggctgtgggacatcctgtcc
agtgacttctcctctgaggaaagggccatgttcctcaagtttgtcaccagctgttcaaga
ccacccctcctgggttttgcctacctcaagccccctttctccattcgctgtgtggaggtg
tccgacgatcaggacacaggggacaccctgggcagtgtcctgcggggtttcttcaccatc
cggaagaaggagcctggcggtcgcctccccacctcgtccacctgcttcaacctgctcaag
ctgccaaactacagcaagaagagcatcctgcgtgacaagctccgctacgccatcagtatg
aacacaggttttgagctctcctaa
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