Coregonus clupeaformis (lake whitefish): 121550649
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Entry
121550649 CDS
T08357
Name
(RefSeq) interferon alpha-B-like
KO
K05414
interferon alpha
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04060
Cytokine-cytokine receptor interaction
cclu04217
Necroptosis
cclu04620
Toll-like receptor signaling pathway
cclu04621
NOD-like receptor signaling pathway
cclu04622
RIG-I-like receptor signaling pathway
cclu04623
Cytosolic DNA-sensing pathway
cclu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
121550649
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
121550649
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
121550649
04621 NOD-like receptor signaling pathway
121550649
04622 RIG-I-like receptor signaling pathway
121550649
04623 Cytosolic DNA-sensing pathway
121550649
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121550649
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04052 Cytokines and neuropeptides [BR:
cclu04052
]
121550649
Cytokines and neuropeptides [BR:
cclu04052
]
Cytokines
Interferons
121550649
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Interferon
SAP18
Motif
Other DBs
NCBI-GeneID:
121550649
NCBI-ProteinID:
XP_041718928
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Position
35:14273278..14274532
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AA seq
184 aa
AA seq
DB search
MATLNVSFVVHLLCIIVLKPVVYAKCSDRKYQIYYLSQTRQTLNDLAMERRPRGCIKEAE
MIMVQRPTLSIEEGEKLWTLRLAFQLASELFQQNLTLVKWNTIKLRELQHLLARQNRTYS
ECVRDMRLRQNLPIADMVKNYFKQLDDFLSHERFSLCSWEVVRAEIGSILRDFYIKTKMP
RKHV
NT seq
555 nt
NT seq
+upstream
nt +downstream
nt
atggcaactcttaacgtgtcctttgtggtgcatcttctgtgtataattgttcttaagccg
gttgtgtatgctaaatgcagtgatcgaaaatatcaaatatattatctttctcaaactcgc
cagaccctcaatgatcttgccatggagaggagaccaagaggctgtatcaaagaggcggaa
atgataatggtccaacgtccaacgctttcaatagaggaaggggaaaagctatggacactg
agacttgcgtttcaactagccagcgagctcttccaacaaaacctaacacttgtgaaatgg
aataccatcaaactcagggagctccaacaccttcttgctcgacaaaataggacctattcg
gaatgtgtcagagacatgcgtctgcgtcaaaaccttccaattgcagatatggttaagaac
tacttcaaacagctggacgactttctttcacatgagcgtttcagcttgtgctcatgggag
gtcgtgagagctgaaattgggagcatcctgagggatttttacattaaaacaaaaatgcca
agaaaacacgtgtga
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