Coregonus clupeaformis (lake whitefish): 121550719
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Entry
121550719 CDS
T08357
Symbol
tmc1
Name
(RefSeq) transmembrane channel-like protein 1
KO
K21988
transmembrane channel-like protein
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cclu02000
]
121550719 (tmc1)
03037 Cilium and associated proteins [BR:
cclu03037
]
121550719 (tmc1)
Transporters [BR:
cclu02000
]
Other transporters
Pores ion channels [TC:
1
]
121550719 (tmc1)
Cilium and associated proteins [BR:
cclu03037
]
Other cilia and associated proteins
Stereociliary proteins
121550719 (tmc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TMC
Na_K-ATPase
COX16
Toddler
OAD_gamma
Motif
Other DBs
NCBI-GeneID:
121550719
NCBI-ProteinID:
XP_041719009
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All DBs
Position
18:20442383..20470226
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AA seq
942 aa
AA seq
DB search
MATAMSLFFVFTADEEDTVIDSDGRQERAKYKERKKVRDRKRRRNGARRASSAGKEGKEL
EDRPERGERRGIKKREKEGKGKGGEDERQEEGKNDTVAKIQKNFSNEKTRKLEQKEMEVV
GEEDGDTEGKRKNGHSKKEEKKEDNERGEKVQKKKKNKRIETSSEQESSEEEEDEVEEEG
EEKPEVLSPEELEKLKEAVDERKKRISTLRGKPWPMRKKLLTLRESHEFVEKYEGALGKG
KSRKLYAYKVMMLKKWMKFQRDFENFKTACVPWEMKIKEIESHFGSSVASYFIFLRWMYG
INMILFGLTFGLVMVPEALMGRPYGSMPRKTVPRAEEANAMDFAVLWDFGGYAQYSVLFY
GYYNSQRAIGWLKFRMPLSYFLVGVGTVAYSYMVVIRTMARNANEDGGGDDNSFNFSWKM
FTSWDYLIGNPETADNKFASITTSFKEAILEEQESRKDDNIHLTRFLRVLANFLVLCCLA
GSGYLIYFVVRRSQKFALEGLESHSWWERNEVNMVMSLLGMFCPMLFDVISALENYHPRI
ALQWQLGRIFALFLGNLYTFIIALMDEINLKREEEEVLKLNMTIWEASLYNGTLGANSTA
PPITVHPADIPRGPCWETMVGQEFVRLIVSDTMTTYITLLIGDFLRAVLVRFLNYCWCWD
LEAGFPSYSEFDVSGNVLGLIFNQGMIWMGAFYAPCLPALNVLRLHVSMYLQCWAVMCCN
VPQERVFKASGSNNFYMAMLLVILFLSTLPAIYTIVTIPPSFDCGPFSGKSRMFDVIQET
LESDFPAWFGKMFSYASNPGLVLPFLLLMVLAIYYLQSTSKSYKQANLELKKKLQTQNEE
NKKKKKMAALKAAMDLEEAQNARSEAPRQQRNNNASQQSYREDRGEKKGGEHRAHQGKSD
HQIPPSATRPPAPRGHGLPGPLPGNQRQPTPSVQRVPNSQRH
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgccatgtctctgttctttgtttttactgcagatgaagaggacacagttatt
gactctgatgggaggcaggagagggcaaaatataaggagagaaagaaagtgagggacaga
aagagaagaagaaatggagcaagaagagcttccagtgcaggaaaagaaggaaaggaattg
gaggacagaccagaaagaggggagaggagaggaataaaaaagagggagaaggaggggaaa
gggaaagggggagaggatgagagacaggaagaaggaaagaatgacactgttgccaaaatt
caaaagaatttcagcaatgaaaagactagaaaactggagcaaaaagagatggaggttgta
ggagaggaggatggggataccgaggggaagaggaaaaatggacactcaaaaaaagaggag
aagaaggaggacaatgaaagaggggagaaagttcagaagaaaaaaaagaacaaaaggatt
gagacaagttcagaacaggagtcatcagaggaagaggaggatgaggtagaggaagaggga
gaggagaaaccagaggtcttgtctcccgaggagttggagaagttgaaggaggcagtggat
gagaggaagaaacgtatctcaaccctaagaggaaagccttggcccatgaggaagaaactg
ctaactctacgggagtcccatgagtttgtggagaaatatgagggagctcttgggaaagga
aagagcagaaaactgtatgcatataaagtcatgatgttgaagaaatggatgaagtttcag
agggactttgaaaacttcaaaactgcttgcgttccatgggagatgaaaatcaaagagatt
gagagccattttggctcctcggttgcctcctacttcatattcctgaggtggatgtatggc
atcaacatgatcctctttgggctgacgtttggcctggtcatggtgccagaggctctgatg
ggcaggccatatggtagcatgcccagaaagactgtccctagagctgaggaagccaacgcc
atggactttgctgtcctatgggactttgggggctacgcccagtattctgtcctcttttat
ggctactacaacagccagcgcgccattggctggctcaagttccgcatgcccctctcctac
ttcctggttggcgtgggaactgtggcctacagctatatggtggtgataaggactatggcc
cggaacgctaatgaggatgggggcggagatgacaacagcttcaatttcagctggaagatg
ttcaccagctgggattacctcatcggcaacccagagacagccgacaacaagtttgcctcc
atcaccaccagcttcaaggaggccattctggaggaacaggagagcaggaaggatgacaac
atccacttgacccgtttcctgcgggttctggccaacttcctggtgctgtgctgtctagca
ggaagtggatatctcatctactttgtggtgcgtcgctcccagaagtttgctttagaggga
ctggagagccatagctggtgggagaggaatgaggtgaacatggtgatgtccctcctgggg
atgttctgtcccatgctgtttgatgtcatcagtgcactagagaactatcacccccgcatt
gctctacagtggcagctgggacgcatcttcgccctattcctggggaacctctacaccttc
atcatcgcactcatggatgagatcaacctcaaacgggaggaggaggaggtgctaaagctt
aatatgactatatgggaggctagtctgtataatgggaccctgggagcgaacagcacagct
cctcccatcactgtccaccctgccgacatcccacgaggaccctgctgggaaaccatggtg
ggacaggaatttgtcagactcattgtgtcggataccatgacaacctacatcacgctcctg
atcggtgacttcttgcgtgctgtgctggtgcgtttcctcaactactgctggtgttgggac
ctggaggctggatttccctcctactcagagttcgatgtcagtgggaatgtcctgggcctg
atcttcaaccaaggcatgatatggatgggtgcgttctatgccccctgcctgcctgctctg
aacgtgttgagactgcatgtgtcaatgtacctgcagtgctgggccgtcatgtgctgtaac
gttccccaggagagggtgttcaaggcctcaggctccaacaacttctacatggctatgcta
ctggtcatcctcttcctctcaacgctgcccgccatctacaccatagtcaccatccccccc
tccttcgactgtggccccttcagtgggaagagccgcatgtttgatgtgatccaggagacg
ctggaatctgatttccctgcctggtttgggaagatgttcagctacgcctccaaccctggc
ctggtgctgcctttcctactgctcatggttttggccatttattacttgcagtctacatca
aaaagctacaagcaagccaacctggagttaaagaagaaacttcaaacccaaaatgaagaa
aacaagaagaagaagaaaatggctgcactgaaagctgccatggatttagaggaggctcaa
aacgctcgatcagaagcaccgcggcaacagagaaacaacaacgcctctcagcaatcttat
agggaagatagaggagaaaagaagggtggggaacacagggcacatcaaggaaagagcgac
catcaaattcccccttctgccaccagacccccagccccgaggggccacggattgcctggg
cccctaccaggaaaccagcggcaaccaacacccagtgttcagagggtcccaaactcacag
agacactga
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