Coregonus clupeaformis (lake whitefish): 121550730
Help
Entry
121550730 CDS
T08357
Name
(RefSeq) LOW QUALITY PROTEIN: transient receptor potential cation channel subfamily M member 6-like
KO
K04981
transient receptor potential cation channel subfamily M member 6 [EC:
2.7.11.1
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
cclu01001
]
121550730
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121550730
Enzymes [BR:
cclu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
121550730
Protein kinases [BR:
cclu01001
]
Serine/threonine kinases: Other
Alpha family [OT]
121550730
Ion channels [BR:
cclu04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
121550730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSDAT_euk
Alpha_kinase
TRPM_tetra
Ion_trans
LSDAT_prok
Orai-1
Motif
Other DBs
NCBI-GeneID:
121550730
NCBI-ProteinID:
XP_041719017
LinkDB
All DBs
Position
18:complement(20846025..20919271)
Genome browser
AA seq
1840 aa
AA seq
DB search
MLYVVFQSQRSWIDNTFCKRECIKFIPSRQDIHRXAGNGTGCYPGCQVCQNLIRCCCGRL
VGEHIWLETGPFMSHWPGPQAEQEERWSVECHTQASATDAYGTIDFQDSAERNCHAKYIR
VAVDAEAEALLQLMLREWQMERPKLLLTVHGGAENFPLPLKVRQAFSKGLITAAQSTGAW
ILTDGINTGVSQYVGEAVKAYGTHCRRKRNAVGVTPWGVIDNHSDLIGRDVLRPYQPLRN
PLSKTVCLNSLHSHFLLVDDGTLGKHGCQLGLRRKLERHIQLQKIHPRLNQGVPVVCVVV
EGGPGIVSMVLDYVSSVPPVPVFVFEGSGRAADLLAFLHKQTTMDRQLDTDIQEDFLLRI
GGMFGLDRADVTQLYNLLMECMDYRQSITIFDSESEDQQEADCAILTATLKGTKASPVEQ
LSTALAWDRADVANKHIQVYGQYWQVGSLEQAMLDALVMDRVGFVKLLIDNGMTMNRFLT
VSRLEELYNTQQGPTDNFLHQLVEDVKQNHIPKGYRYSLIDVGQVIEYLIGGAYRSTYTR
KHFRAYYKRLQAPLPPSLLSLLSLQERSMVPRELKEAHQQSSKLGDSSLVVFNFNDLFVW
AVLQRRQQMALFLWQHGEEAMVRATVACKLYRAMAHEAQQSNMDDNTTEQLKTYSLDFGQ
LAVDVLDNAFRQNERMAMKLLTSEMEAWSHFTCLQMAMSSQLRPFVSHSCTQMLLTDLWT
GRLNMRKNSWFKIILSILMPPAILLLEFKSQADMSHVPQSQEALQFVWDTGRPEADQEEG
HTCLFWTRRLYEFYNAPVVKFMFHTMSYLAFLMLFSYTVLVKMEDRPSTQEWLVITYIVS
TAVEKIREVFMSEPKKPSQKLKVWFGEYWNVADFLAILLFLVGLALRWHSGSYQTAGRVT
YCLDIIFWYVRMLDLLAVNQYAGHYLTMITKMTSNMFYIVVMMAIVLLSFGVSRKAILSP
DEAPSWSLLRDVVNQPYWMMFGEGYPDEIDACADGKSCAPGAFLNPYLQAIYLFVQYLIM
VNILLAFLNNVYFKMKFKSKKLWKYNRYRYIMTYQEKPWLPPPFISLCHMTLCMTTIYRK
HRGSSEKERDSCRLKLYLGQAELKRLHEFEERCVMAYFHKKKQDVLCSQIHRIRATAERA
EEMGVVIGEVSERVHFIQDTLQVLDSQLGQLQDLSALAVDTLTLLSASDSLQQKEAHLGH
CRPIAPSHPHSWTLPHIDITPCHTPKAYRSTPPSLLRGHTSSRSQRPPLEWHPGTWGVGG
RGGWGTGETKEEQEEQSIMVHHSGEVWPVGYGFAPHDSLPHLGGSGLRDRTPCESSHCGS
PPYPWAWAVEGSLEPPHCKPWACCDPEMSMEEEEEREVGQSFDVDVSRASSHAFLLLDPQ
DERGCGARGLVNPAFCKDDDPGAACSRLGQWGRKCPRRWACLSRDQQYRHSRSPSSSVEY
MALSNPPLRPLQASFPSLDCLSGERSFTADIPLGCSKSREWSKSSDLAMTSGSRERCQAR
KTVKISEGSSSDADSSQSVWTNWARSVSVQGGITPEDLDPHYSAMEKNNLMRLAHTIPFT
PVSIIAGEVVSVYSLEEVETAGAESSIISWLPRGLSAVLQPLSSEGCLDGALRRTMRVLC
TWAEGDVLRVGCVYVVKAFQPKVICTWQRVFHSDTPLQLCLREIQQQRAAQKLMHVFNQV
KPENVPHSPRFLDVSLLHCHSDGQWLTIERNLVGDFRKYNNNTGEEIAPCCGMEETLLAF
SHWTYQYSRRELMVLDIQGVGLELTDPSVIRADNKCLTGDMVFGPANLGDTAIQSFVLKH
TCNSCCKNLRLSDLKRSTDSCRKTEHRSSEEERGVNMTRV
NT seq
5523 nt
NT seq
+upstream
nt +downstream
nt
atgttgtatgttgtgttccagtcacagaggtcttggattgacaacaccttctgcaagaga
gagtgtattaaattcatcccatcacgtcaagacatacacaggtgagctggaaatgggact
ggatgttatccagggtgtcaagtatgccaaaacctaataagatgctgctgtggacgtctg
gtcggggagcacatctggctggagactggccccttcatgtcccactggcctggaccccag
gcagaacaggaagagaggtggtcagtggagtgtcacacacaagccagtgccaccgatgcc
tacggaaccattgacttccaggacagcgctgaacgtaactgccatgccaagtacattcgt
gttgcggtcgatgccgaagctgaggctctgctgcagctgatgctgagggagtggcagatg
gaacgtcctaaactactgctgactgtccacgggggggcagagaacttccctctccccctc
aaggttagacaggccttcagcaaaggcctgatcaccgcagcccagagcactggagcctgg
atactcacagacggcatcaacacaggtgtgtcccagtatgtaggggaggctgtgaaagca
tacggcacccattgccgcaggaagaggaacgctgtaggggtcacgccctggggcgtaatt
gacaaccacagtgaccttatagggagagatgtgctcaggccttaccagcccctgagaaac
cccttgagtaagacggtgtgtttgaacagcctgcactcccacttcctgttagtggacgat
ggaactctgggaaaacatggctgccagctgggactcaggaggaagctggagagacacatt
caactgcagaagatccatcctaggcttaaccagggtgtgccagtggtgtgtgtggtggtg
gagggcggccctggaattgtgtccatggtgctggactatgtgagcagtgtgccccccgtg
cctgtgttcgtcttcgagggatcaggccgggcggctgacttgctggcattcttacacaaa
cagaccactatggataggcagctggacacagacatccaggaggactttcttctgaggata
gggggcatgtttggtctggacagagcagacgtcacccagctctacaaccttctgatggag
tgtatggactacagacagtctataacaatcttcgactcggaatccgaagatcaacaggag
gcagactgcgccattttgacagccacactgaaaggtaccaaggcatctccggtggagcag
ctcagtacagctctggcttgggacagagcagacgtggctaacaaacacatccaagtgtac
ggccagtactggcaggttggctcattggagcaggccatgctggatgctctcgtcatggac
cgtgttggctttgtcaaactgttgatcgacaacggtatgaccatgaaccgcttcctgacc
gtgtcacgtctggaagagctctataacacgcaacagggaccaacagacaatttcctccat
caacttgtggaagatgtgaaacagaaccatatacccaaaggatacagatactccctcata
gacgtggggcaggtgattgagtatctgataggaggagcctatcggagcacatacacacgg
aaacacttccgggcctactataaacgcctacaagcccctctccctccctccctcctctct
ctcctttctctacaggagagatccatggtgcccagggaactgaaggaagcccatcagcag
agctccaagctgggcgactcttctctggttgtgttcaacttcaacgacctgtttgtgtgg
gccgtgctgcagagacgccagcagatggcgctattcctgtggcagcacggggaggaggcc
atggtccgggctacggtggcctgtaagctgtaccgtgccatggcccacgaggctcagcaa
agcaacatggatgacaacacgacggagcaactcaaaacctactcgctggactttggtcag
ctggctgtggatgtgctggacaatgccttcaggcagaacgagcgcatggccatgaagttg
ctgacctcggagatggaggcctggagccacttcacctgcctgcagatggccatgtcctcc
cagctccgccccttcgtctcccactcctgcacccagatgctgctcaccgacctgtggact
ggtcgcctcaacatgaggaagaactcctggttcaagatcatcctgagcatcctcatgccc
cctgccatcctgctactagagtttaagagccaggcggatatgtcccatgtgccccagtcc
caggaggctttgcagtttgtttgggacacggggagaccagaggcagaccaggaggagggg
catacatgtctcttctggaccaggaggctgtacgagttctacaacgctcctgtcgtcaag
ttcatgttccacacgatgtcctacctggcctttctcatgctgttctcctacactgttctg
gtgaagatggaggatcggcccagcactcaggagtggctggtcattacctatattgtatcc
accgcagtggagaaaataagagaggtgttcatgtcggagccgaagaagcccagtcagaag
ctgaaggtgtggttcggagagtactggaacgtggctgacttcctggccatcctcctcttc
ctggtggggctggcactgcgctggcacagtgggtcctatcagacagcagggcgggtcacc
tactgcctggacatcatcttctggtacgtccggatgctggacctgctagcggtcaaccag
tatgccggacactacctcaccatgatcaccaagatgaccagtaacatgttttacattgtg
gttatgatggccatcgtgctgctgagtttcggcgtgtccaggaaggccatcttgtctcca
gacgaagctccatcatggagcctgctcagagatgtggtcaaccagccgtactggatgatg
tttggagaagggtaccccgatgaaatagacgcctgtgcagacggcaagtcgtgtgcaccc
ggggccttcctcaacccttacctccaggccatctacctcttcgtccagtacctcatcatg
gtcaacatcctccttgcctttctcaacaatgtctactttaaaatgaagttcaaatccaaa
aagttgtggaagtacaaccgctaccgctacattatgacctatcaggagaagccgtggttg
cccccgcccttcatcagcctgtgtcacatgaccctgtgtatgaccaccatttaccggaaa
cacaggggctcgtctgagaaggagagagactcctgtcggcttaagctttacctgggccaa
gcggagctgaagaggctgcatgagtttgaggagaggtgtgtgatggcgtatttccacaag
aaaaaacaagatgttctctgcagccagatccacaggatccgagccactgcagaaagggct
gaggagatgggtgtagttattggcgaggtgtctgagagggtccatttcatccaggacacc
ctgcaggtgctggacagccagctgggccagctgcaggacctgtccgccctggccgtggac
accctcaccctcctgtcggcctctgacagcctgcagcagaaggaagcccacctgggccac
tgccggccaattgccccctcccatccccacagctggaccctcccccacattgacatcacg
ccctgccacacccccaaggcctaccgcagcaccccaccctccctgctgcggggccacacc
tcctcccgcagtcaacgcccgccactggagtggcacccggggacctggggggtcggcggc
cgtggggggtgggggactggcgagacaaaagaggaacaggaggaacagagtatcatggtg
catcacagtggcgaggtatggccggtgggatacggctttgccccccatgactctctccct
cacctgggcggttcagggcttagggacaggaccccctgtgagtcatcccactgtggctct
cccccgtatccctgggcctgggctgtagagggttctctggaacccccccactgcaaaccc
tgggcctgctgtgaccctgagatgtccatggaggaggaggaagagcgggaggttgggcag
tcctttgatgtggatgtgtccagggcctctagccatgcctttctgttgttggacccccaa
gacgagagaggctgtggggccaggggtttggtgaaccctgccttctgtaaggatgacgac
cctggggcagcttgctccagactgggccagtggggcaggaagtgtcctcgtcggtgggcg
tgtctttccagggaccagcagtacagacacagccgctctccttcctctagcgtggagtac
atggctctatctaatccccccctgaggccactacaagcctccttcccctccctcgactgc
ctatcaggggagcggagcttcacagctgacataccccttggctgcagtaaaagcagagag
tggtccaagtcgtctgacctggcaatgacctcagggagcagagagaggtgtcaggccagg
aagacagtcaagatttcggaggggagttcttcagacgctgactccagtcagtccgtgtgg
accaactgggcccgctctgtctcagtgcagggtgggatcacacctgaagacctggaccca
cactactcagccatggaaaagaacaacctgatgaggcttgctcacaccatacctttcaca
cctgtctccataatcgcaggagaggtggtgagtgtctactccctggaggaggtggaaact
gcaggtgcggagtcctccataatctcctggttgccccgggggctgtctgcagtgctgcag
ccgctgtccagcgagggctgtctagacggggctctgcgtaggaccatgcgcgtgttgtgt
acctgggccgagggggacgtcctgagggtgggctgcgtgtacgtggtcaaagccttccag
cccaaggtgatctgcacctggcagagggtcttccacagcgacacccccctccaactctgt
ctgcgggagatacagcaacagagagctgctcagaaactcatgcatgtgttcaatcaagtc
aaaccagaaaacgtgccacattctcccagattcctggatgtgtctcttcttcactgtcat
tcagacggccagtggttgaccatagagaggaacctggtgggagacttcaggaagtacaac
aataacacaggagaggagatcgccccctgctgtgggatggaggaaacgctcctggccttc
tcccactggacctaccaatactcccgtagagaactaatggtgctggacatacagggagtg
gggttggagcttacagacccatcagtcatccgagcggacaacaaatgcttgactggtgac
atggtgtttggtcctgctaacctgggagatactgccatccagagctttgtcctcaaacac
acctgcaactcctgctgcaagaacctcagactctcagatttgaagaggagcacggacagc
tgtaggaaaacagaacacagatcttctgaagaggaaagaggagtgaacatgaccagagtg
taa
DBGET
integrated database retrieval system
