Coregonus clupeaformis (lake whitefish): 121550741
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Entry
121550741 CDS
T08357
Name
(RefSeq) collagen alpha-3(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04510
Focal adhesion
cclu04512
ECM-receptor interaction
cclu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121550741
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121550741
09142 Cell motility
04820 Cytoskeleton in muscle cells
121550741
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cclu04147
]
121550741
00536 Glycosaminoglycan binding proteins [BR:
cclu00536
]
121550741
Exosome [BR:
cclu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
121550741
Glycosaminoglycan binding proteins [BR:
cclu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121550741
Hyaluronan
Extracellular matrix or blood plasma proteins
121550741
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Kunitz_BPTI
VWA_3
fn3
Motif
Other DBs
NCBI-GeneID:
121550741
NCBI-ProteinID:
XP_041719035
LinkDB
All DBs
Position
4:complement(4740115..4827489)
Genome browser
AA seq
3006 aa
AA seq
DB search
MRKHRLLPLCALLGILFAGLLPKLDAQGQEAQESADLVLLIDGSENVGEANFPRVRDLAM
KVIEGLDVGRDTIRVAVALYSVDPKVQFFLNNYDTKAAVLDAVKALQFKGGDEANLGAAL
EEVAERLLNPASGGRGEEGVPQALVVISAGPSNDDFSAGDRALKAASIITFGVVVGGAAT
AELETIATDKSFVLTAPDFRAVASMGDQLLPYINGVAQRTIVIQNEFTEALEVGKRDIIF
LIDSTMGATMINSLREFIKKFVDTMPIGPDQVQVGVAQFSNAARLEIELNAYGSKEDLSA
ALGRLKPRPGQAVNIGAALDFVRTNMLRADKGSRIQHGVPQLVLLMTSKKSSDSVEKAAE
ALQRMGVLTLAAGSKAADEQELKQIAFDESLVFMLKDFRILLRNPKVIVSPLSTLSGIVV
TEEPTEPVVEITTVQTQRVVRDIVFMVDGSSYVGGANLPYVQDFIAGVVNQLDVRPDRVR
IGLMQFTENPKIEFYLNTHNTKQDVLASLGQLRLMGGSALNTGAAMDYALTNMFQASTGS
RKRQGVQQVLLLITGGPSQDEVKRIADKVAVAGVLTFTVSAGQADEALLKTVAFVPDLAY
HESIFANLPSVVEQIMTPLITVVGDTDIAVTDIEITEEPAVVGGERDVAFLIDGSDNVRA
DFPYIRDFIIKVIEPLDIGQDRVRISVVQHSERPAPNFYLNTYKDKAEVLRAVNDLRLSG
GRSLNTGMALKFMKDTILSPVHGSRAAQNVPQFLIVLTGGKSKDSVKESAGALKTDGVVP
FGVGVKDADPKQIEEISHNPSFAFNVKEFSQLNTVQQRLNSYVSLPKEKLKVVLEEAESQ
GPKKDIVFLVDGSDGVGREFPIIQEFIRWIVTNLNVGENKIRIGVVQYGDSPNADFYLNS
HTTKEGVMNAVKGLRQRGGRERNLGQAMEFVSSEVLNVQRGGRKEEGVPQFLIVVSGGRS
TDDISRPATSLKQSGVLPFSIGTRDVNPQELQVVSYVPNFAYTVDDLPGLYTVQDTLIST
LTELSDDDIARLRPVFPTVDVTTTIVSTGGEKRDVVFLIDGTTAVRSEFPAIRDMIGRVV
EKLDVGLDRVRVSVVQYSDDAKMEFLLNEHSTKDEVRQATRNLRSRGGNRLNTGRALEWV
SKNIYQRSAGSRIEEGVPQFLILVTGGKSNDDVSGPANQLKINMVAPLAIGAKNANPDEL
RQISLKPEFAYSINNFGQLPRVEQQLIASVNTMTTTDIFVPPVLDIANLNMGRKDIIFLI
DGSDTTGSNGIAHIRDFILNIVQQLDVQPDQVRVAVVQYSDKVKTEFSLNSHNNKPAVLS
AIKRLRQQGGRSSDLAEAIEYVIRNELKASAGVRLAEASQHLVVLTGGRSPTDVSVYGPL
LKGSRVNCIGIGAGGADSRQLNQIATSSADVLQVPTFPGLPTIKERFIARLNGTIPEEAP
TEIDDPSLPKAKVADIVFLVDGSINLGKDNFKEVMEFILNLIDLFFTERDNLQIGLAYYA
TDVTDVFYLNTYKTKDDIISALSRIEYKGGRRINTGAAIRHVQENHFIKDKGSRKDEGIP
QILMIVTGGRSSDDGKTAALGLKATGVRIYAVGVGDIEDELNNLASEASTVARASTFLEL
SELNEQILETLDDEVKGIKLCTGVSQEPSKACSLEVLVGFDVSSQNIFQAQRILESKMGA
ILQRITKMTGISCSSGQIPSIQVGILAMDTASEPVHLEFTDNADMLFEAFRALRNRGPYV
LNAKTIAAYGSRFKSRAADAVKVVIHLTDGLDGQYNEMKRRVEELKISGVNSFILVGLER
VPRFEEAVLLEFGRGFRYTRPLRVNVMDLDYELLEELDNIAERECCAVPCKCTGTRGDRG
AVGLGGPKGGPGGAGGAGHPGDEGGPGDRGPPGVNGTQGFQGCPGQRGIKGGRGYSGEKG
EFGEIGLDGINGEEGKSGVAGSPGDRGNPGRRGPKGTKGQEGDIGDTGIRGDPGTTGQDN
NVAGPKGDPGDVGPVGEPGEDGKKGGPGEPGRTGSDGRRGPPGQAGNPGKPGGDGVQGEP
GIGGSRGQAGPIGAPGTRGEDGNPGPRGPGGAQGPPGDKGRRGALGRKGEPGEAGPKGIV
GPLGPRGEPGEDGRDGFGIAGPKGRKGDEGFPGFPGPKGAAGDGGTNGGPGPIGNRGQRG
VSGEIGTPGQKGEVGYPGPYGQKGPRGPGVVQCDLVKKIRDNCPCCYGQQECPLYPTELA
FALDVSDGVGRPAFNNMRDAVLRLVGNITISESNCPRGARVALTLYNNEVTTEIRFADVL
KRRSLVQRVEGLQALQTRKQRSLETAMNFLAQNTFKRVRSGFLMRKVAIFFVNGPVKDQR
AVSAAALRLYDSGIASVFLVNKEDGQLTRALKMNNTGSALGQVIVLPNPGSAQYNSAIKK
VMSCHICLDSCAPDQMCDYVPPQQSRDRRSSTTDVDIDMAFVMDSSETTYPTVFTEIKRY
IVHIVEQLEVSSEPVASIHHARVAVIQQAPYEFLHNGSGSPIRVDVGLTDHRSAQDIRNF
LLDKTPQLEGGRALAAAIEHTVEQVFERAPHQRDLKVLTLFVTGPVEEDEERMVAVATEA
KCKGYFLVILGVGEKLGAGDARVLTRMASEPSDVFFKRLTSTSHFYDKHIQNFGRLLPKY
LSIENAFYMSPEVSKNCHWYQSDQPFPKFPFPKSHHSQEKYQKLHENHQAVHPRKHKDQD
SEELHVANVTSSGLTLRWASPDPKLMAYFEVVVTRLRDHTLVLKRNVTGTELTVGGLESA
QTYHAMVTTHTAQGHIAATHKGIITTKAAAEHKVAAPMEVTGIITTTPLDKSEIANELTD
PCSLDFDPGMACKNHQAKWFFDRKNGICTQFWYGGCEGNGNRFETEAQCLKRCLRSEPQL
QVEQQLETEILPAPATGVEICQLPKEEGACAKFVLKWHYDALSKSCTRFWYGGCGGNQNR
FETHEECEKACGKAALPRGQKAWDWLDESRANLGWSSQRRVRMKGKRRKGSLGASVNQGV
IAAIRT
NT seq
9021 nt
NT seq
+upstream
nt +downstream
nt
atgaggaaacaccggttgttaccgctgtgcgctcttcttggcatcctgttcgcaggactt
ctgcccaaacttgatgcccagggacaggaagcacaagagtcagctgaccttgtactctta
attgacggatctgagaacgttggagaggccaacttcccccgcgtgcgcgatttggctatg
aaagtcattgagggcctcgatgtgggcagggacacaattcgggtggctgtggctctgtac
agcgtggacccaaaggttcagttctttctaaataactatgacaccaaagccgctgtcctg
gacgctgtgaaggcccttcagttcaaaggcggcgatgaggctaaccttggagccgccttg
gaggaagtcgctgagaggctgttgaatccggcatcagggggcaggggagaggagggggtg
ccccaagctctggtggtgatcagtgctgggccgtccaacgacgatttcagtgcgggtgac
agggctctaaaggcagcaagcattatcacgtttggcgtggtggtcggcggcgcggctacc
gccgagctggagactatcgccacagacaagagctttgttctgacggcccccgatttcagg
gcagtggcaagcatgggtgaccagttgctaccatatattaacggggtggcccagcgcacc
attgtcattcagaatgaattcacagaagccttggaagtgggaaaaagggacatcattttt
ctcattgacagcactatgggcgccacaatgatcaactctcttcgtgagtttatcaaaaag
tttgttgacaccatgccgatcggaccggatcaagtgcaagtgggtgtggcccagttcagc
aacgctgccaggcttgagattgagctgaacgcatatggatccaaggaagacctgagtgcg
gccctgggcagactcaagccaagaccaggacaagcggtgaacattggggcggccctggac
tttgtgaggaccaacatgctgagggctgacaaggggagtcgtattcagcatggcgtgccc
cagctggttctgttaatgaccagtaagaagtccagcgacagtgtggagaaggctgctgag
gcactgcagcgcatgggggttctgaccctggctgccggctctaaggctgccgatgagcag
gagctgaagcagattgcctttgatgagagcttggtgttcatgctgaaggacttccgcata
ttgctccgcaaccccaaggtgattgtctctcccctctccactctatcggggattgtggtg
actgaggaacccacagagccagtggttgaaattacaacagtgcagacccagcgagtagtc
agagacatcgtctttatggtggatggctctagctacgttgggggtgccaaccttccgtac
gtgcaggatttcattgccggtgtggtaaaccagctggacgtgcggcccgacagggtgcgc
atcggcctcatgcagttcacagagaacccaaagattgaattctacctgaacacgcacaac
acaaagcaagatgtgctggccagccttggtcagctcaggctaatgggagggtctgctttg
aacacgggagcagctatggattacgcccttaccaacatgttccaggcctcgactgggtca
cgtaagaggcaaggtgtccaacaggtgcttcttctgatcactggaggcccatcccaggat
gaggttaaaaggatagcagacaaagtggccgtggcgggtgtactgaccttcacagtcagt
gctggccaggcagatgaggccctcttgaagacggtcgcttttgttccagacttggcttac
catgaaagcatatttgctaacctgccaagtgttgttgaacagatcatgactcctttgatt
actgtggtcggagatacagacattgcagtaacagacattgaaataactgaggaacctgca
gtcgttggaggcgagagggatgttgcgttcctgattgacggctctgataatgtccgagca
gatttcccctacatccgggactttatcatcaaagtcattgagcctcttgatattggacaa
gatagagtccggatttcagttgtccaacatagtgagaggccagctcccaacttctacctg
aatacatataaggataaggctgaagtgttaagggccgttaatgatctaagactgtccggt
ggacggagtctaaacactggaatggccttgaaattcatgaaggacaccatcctgtctccg
gttcatggtagccgtgcggcccaaaatgtcccccagtttttgattgttttgaccggaggc
aagtctaaggatagcgtgaaggaatctgctggcgctttaaagaccgatggagtggtacca
tttggcgttggtgtcaaggatgcagaccctaagcaaatcgaggagatttctcacaaccca
tcctttgctttcaacgtgaaggaattcagccagctcaatacggtccaacaaaggctcaat
agctatgtgagccttcccaaggaaaagctgaaggttgtcctggaggaagctgagtcccag
ggccccaagaaggatatcgtcttccttgtcgatggctcagatggcgtcggacgggagttc
cccatcatccaggagttcatccgctggatcgtgacgaacctcaacgtgggagagaacaag
atcaggattggtgtggtgcagtatggcgactcccccaatgcagatttctacctgaactcc
cacacaaccaaggagggggttatgaacgctgtcaagggactgaggcagcgaggcggccgg
gaacgtaacctgggtcaggcaatggagtttgtcagtagtgaagtgctgaatgttcaacgt
ggcggcaggaaggaggagggtgtcccacagttcctgattgtcgtctccggcggaaggtcc
acagacgatatcagtcgacctgcgacatcactgaagcagtcaggcgttttgcccttcagc
atcgggaccagagatgtaaaccctcaggagcttcaggttgtctcctacgttcccaatttt
gcgtacactgtggatgacctccctggcctgtacacagtccaggacacactgatctccaca
ctcacagagttgtcagatgacgacattgccaggctgcgccctgtattcccaactgtggat
gtcaccacaaccatagtatccactggcggagaaaagagggatgtggttttcctcattgac
ggcacaacagctgtgcgcagcgagttccctgccatccgtgacatgatcgggagggtcgtg
gaaaagctggacgtgggtctggatcgggtcagggtgtcagtggtgcagtacagtgacgac
gccaagatggaattcctcctgaacgagcactccaccaaagacgaggtccgccaggccacg
aggaatcttcggagcaggggtggaaaccgtctgaacactggccgtgccctcgaatgggtc
tccaagaacatctatcagagatcagccggtagccgcatcgaggagggtgtgcctcagttc
ctcattctagtcacggggggaaagtccaacgatgacgtctctggaccagccaaccagctg
aagatcaacatggttgcccctctagccatcggggcaaagaatgccaaccctgacgaactg
aggcagatctccctgaagccggagttcgcctactccattaacaacttcgggcagcttcca
agagtggagcagcagcttattgcttcagtcaacaccatgaccaccactgacatctttgtt
cctcctgttttggatattgctaacctcaacatggggagaaaggacataatcttcctcatc
gacggctcggacaccacagggtccaatggcatcgcccacatccgtgacttcatcctcaac
atcgttcagcagctggatgtgcaacctgaccaggttcgggtcgctgtcgtccaatactcc
gacaaggtcaagacggagttctctctcaactcccacaacaacaagccagctgtgctctct
gccatcaaaagactacgccagcagggtggcagatcgtccgatctggccgaagccatcgag
tatgtgatcaggaacgagctgaaagcctcggcaggtgtccggcttgcggaggcctcccag
catctggtggtcctcaccggcggaaggtcccccactgacgtgtctgtgtacggccctctg
ctcaaaggctcccgggttaactgcattggcattggtgctggcggagcagactccaggcag
ctcaaccagattgccaccagctctgctgatgttctccaggtacccactttccccggcttg
cctaccattaaggagaggttcattgccaggctcaatgggacaatccctgaggaggcccct
acagaaattgacgacccaagcctccctaaagccaaggttgctgacatcgtgttcttggtg
gatggctccatcaaccttggcaaggacaacttcaaggaagttatggagtttattctgaac
cttatagacctcttcttcaccgagcgtgacaacctgcagattggcctggcgtactatgcc
accgacgtcaccgatgtcttctacctcaacacctacaagaccaaggacgacatcatcagc
gccctcagtcgcattgagtacaagggtggccgcaggatcaacacgggcgctgccattcgc
catgtgcaggagaaccacttcatcaaggataaaggcagcaggaaggatgagggcatcccc
cagatcctgatgatcgtcaccggtggaaggtcatccgacgatggcaagactgccgctctg
gggttgaaggccactggcgtgcgcatctacgccgttggcgtgggcgacattgaggacgag
ttgaacaacctggcgagcgaggcttccacggtggccagggcaagcacgttcttggagctc
tctgagctcaacgagcagatcctggagacattggacgacgaggtgaagggaatcaagctg
tgcactggcgtgagccaggaaccctcaaaagcctgcagtctggaggtgttggtgggcttc
gacgtgtcctcgcagaacatcttccaggcccagaggatcctggagtccaagatgggtgcc
atcctccagaggatcaccaagatgacgggcatcagttgctcgtcgggccagatcccctca
atccaggtgggcatcctggccatggatactgcctcggaacctgtccacctggagttcacg
gacaacgccgacatgctgtttgaggcattccgggccctgcgcaatcgcggcccctatgtc
ctcaatgccaagaccatcgccgcatacggttcgaggttcaaaagccgagccgcggacgca
gtcaaggttgtgatccatctgactgacggtctggatggccagtataatgaaatgaagaga
cgggttgaagaacttaagatttcaggtgtgaacagcttcatcctggtgggtctggagcgg
gtacccaggtttgaggaggccgtgctgctggagtttggccgtggcttcaggtacaccaga
cccctccgagtcaatgtcatggacctggactacgagcttctggaggaactggacaacatt
gctgagagggagtgctgcgcagtgccatgcaaatgcaccggcacaaggggagaccgagga
gcagtcgggcttggaggacccaagggcggtccaggtggagcaggcggagcaggtcatccc
ggagatgagggaggacccggagacagaggtcctcctggtgtcaatggaactcaaggtttc
cagggctgtcctggacagaggggcatcaagggtggtcgtgggtactctggagaaaagggt
gaatttggagagatcggcctggatggcataaacggagaagagggcaagagtggagtcgct
ggatccccaggagacagagggaaccctgggagaaggggacccaaaggaactaaaggacag
gaaggagacatcggggacaccggtatcagaggagatcctggaaccacaggtcaagataac
aatgtggctggacctaaaggagatccaggcgatgttggcccagtgggagagccaggggag
gatggtaagaagggaggccccggtgaaccaggcaggacgggttctgatggtagaagaggc
ccacccggacaagctggaaaccctggcaaacccggaggtgatggtgtgcagggagagcct
ggtatcggaggatccagaggccaagctggaccaatcggtgcacctggaaccagaggcgag
gacgggaaccctggaccaaggggtccaggaggagcccagggaccccccggagacaagggc
aggagaggagctcttggtcgcaagggtgagccaggagaggccggaccaaaaggcatcgtg
ggacctctgggacctcgtggtgagcctggcgaagatggtcgagatggatttggtatcgca
gggcccaaaggaagaaagggtgatgagggcttcccaggattcccaggaccaaagggagcg
gcaggtgatggcggaaccaatggcggaccaggacccataggaaaccgtggccagaggggt
gtttcaggggaaatcggtactccaggtcaaaagggagaggttggataccccgggccttat
ggccagaaaggaccaagaggacctggcgttgtgcaatgtgacctggtgaagaaaatcaga
gacaactgtccttgctgctatggtcagcaggagtgccctctctaccccaccgagctggcc
ttcgcccttgacgtttccgatggcgtgggtcggcccgccttcaacaacatgcgtgacgcc
gtgctccgcctagtcggcaacatcaccatctccgagagcaactgcccgcgcggcgcccgc
gtggccctcaccctctacaacaacgaggtgaccaccgagatacgctttgctgatgtgctg
aagcgccgctccctggtgcagcgcgtggaaggcctgcaggcattacagacgcgcaaacag
cgcagcctggagacggccatgaacttcctggcgcagaacaccttcaagagggtgcgcagc
ggcttcctcatgaggaaggtggccatcttctttgtcaacgggccagtgaaggatcagcgg
gcggtcagcgccgcggccctccgcctctacgactccggcatcgcctctgtgttcctggtc
aacaaagaggatggccagctcaccagagctctgaagatgaacaacactgggtcagcactg
ggtcaggtgatcgtactgcccaatcccggaagtgcacagtacaactctgctatcaaaaag
gtcatgagctgccacatctgcctggactcctgcgctccagatcaaatgtgtgactacgtc
ccccctcaacagtcgagagacaggaggtcctccaccaccgatgtggacattgacatggcc
ttcgtcatggacagctccgagaccacctaccccactgtcttcaccgagattaaacgctac
attgtgcacatcgtagagcagctggaagtctcgtcagaacccgtggcatccatccaccac
gcccgtgtggccgtaatccagcaggcaccctacgagttcctgcacaacggtagcggctcg
ccaatccgcgtggacgtgggcctgaccgaccaccgctcggcccaagacatccgcaacttc
ctgctggacaaaacgccccaactggagggcgggcgggcgctggcggcagccatcgagcac
acggtggagcaggtgtttgagagggcgccccaccagcgcgacctcaaggtgctgacattg
tttgtgacaggcccagtggaggaggatgaggagcggatggttgccgtggccaccgaggcc
aagtgcaagggctatttcttggtcatcctcggtgttggcgagaagctgggtgctggggac
gcccgcgtgctgactcgcatggccagtgagccctccgacgtcttcttcaagaggctgacc
agcacctcgcacttctatgacaagcacattcagaactttggccgactgctgcccaagtat
ctcagcattgagaacgctttctacatgtcccctgaagtctccaaaaactgtcactggtac
cagagtgaccagccattccccaagttccccttccccaagtcacaccacagccaagagaaa
tatcaaaaactccacgaaaatcaccaggcagtccatccaagaaagcacaaagaccaagac
tcagaggagttgcacgtagccaacgtcacttccagtggcttgaccctacgctgggccagc
ccggaccccaagctcatggcctacttcgaggtggtggtgacgcgcctgcgcgaccacaca
ctggtgctgaagaggaacgtgacagggacggaactcactgtaggcggcctggagagcgcc
cagacctaccacgccatggtgaccacacacaccgcccagggccacattgcggccacccac
aaaggcattattaccaccaaagcagcagcagagcataaggttgctgccccaatggaggtg
actggtatcataaccactacaccactggacaaatcagagattgctaacgagctcacagac
ccatgctctcttgactttgaccctggaatggcgtgcaaaaaccatcaggctaagtggttc
tttgacagaaagaacgggatctgtacccagttctggtacggtggttgtgaaggcaatggc
aataggttcgagactgaagcccagtgcttgaaacgctgcctgaggtcagaacctcagcta
caagtggagcagcagctcgagactgaaatccttccagctcccgcgacaggagtggaaatc
tgtcagctccccaaagaggaaggcgcctgcgcaaagtttgtcctaaagtggcactatgat
gccctcagcaagagctgcacgcgcttctggtacggaggctgtggcggtaaccagaatcgc
ttcgaaactcacgaggagtgtgagaaggcctgtggaaaagcagctctgcctcgagggcaa
aaggcatgggattggttggatgaaagccgtgcaaacctcgggtggagctcacagcgacga
gtgagaatgaaaggaaagagaagaaaaggctcgctaggtgcatctgtcaaccaaggagtc
attgccgcaataagaacatag
DBGET
integrated database retrieval system
