Coregonus clupeaformis (lake whitefish): 121550817
Help
Entry
121550817 CDS
T08357
Name
(RefSeq) probable E3 ubiquitin-protein ligase MGRN1 isoform X1
KO
K10604
E3 ubiquitin-protein ligase MGRN1 [EC:
2.3.2.27
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04120
Ubiquitin mediated proteolysis
cclu04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121550817
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
121550817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121550817
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121550817
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121550817
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_3
zf-RING_2
Prok-RING_4
zf-C3HC4
zf-RING_5
zf-C3HC4_2
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
121550817
NCBI-ProteinID:
XP_041719120
LinkDB
All DBs
Position
35:9671885..9680822
Genome browser
AA seq
551 aa
AA seq
DB search
MGSILSRRIAGVEDIDIQANSAYRFPPKSGNYFASHFFMGGEKFDTPHPEGYLFGENMDL
NFLGNRPVQFPYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKDDTDAPVEEGGKPKVLYGV
EFTFDADARVAITLYCQAFEEFANGMAMYNPKGPAMVSETVHYKRGVSQHFSLPSFKIDF
TDWKEEDLNFDLDRGVFPMVIQAVVDEGDDCLGHAHVLLAAFERHVDGSFSVKPLKQKQI
VDRVSYLLQEIYGIENKNNQETKPSEDENSDNSNECVVCLSDLRDTIILPCRHLCLCNSC
ADTLRYQANNCPICRLPFRALLQIRAVRKKPGPLSPVSFSPVLAQNMDHDEHSSSDSVPP
GFEPISLLEALNGLHSVSPSIPPAPLYDDINFSGGLVGEGRPLGSPEHSGDGGLQKAKVS
KSPDSTLRSPSSPIQEEDEEKLSELSDAQPHTLLYSSPAPTEATAAEDVPESVSPDDEDR
LHSGGEREILHDCSSEHSSLTKTESDPPGDLSLPGSSESTESLKSQSTNCSSQPLLCPPS
SLHMEDEQLDS
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atggggtcaattcttagccggagaatcgctggcgttgaggatattgatatccaggcgaat
tctgcatacagatttccaccgaaatcggggaattactttgccagtcattttttcatggga
ggggagaaatttgacactccccatccagagggatacctatttggagaaaacatggatctg
aacttccttggaaataggcctgtacaatttccatacgtgaccccggcaccccatgagcct
gtgaagaccctgagaagtctggtcaatatcagaaaggactccctgcgcttggtcaggtac
aaagatgacactgacgctccagtggaggaaggagggaagccaaaggttctgtatggtgtg
gagttcacatttgacgctgatgctcgtgtggctatcaccctgtattgccaagcttttgag
gaattcgccaatgggatggcaatgtacaacccaaagggaccagccatggtttctgagact
gtgcactataagaggggtgtgagccaacatttctccctgccttctttcaaaatcgatttc
accgactggaaggaggaggatctgaactttgacctggaccggggtgttttccccatggtg
atccaagctgtggtggatgaaggggatgattgcttgggacatgcacatgtgctgctggca
gcctttgagagacatgtggatggcagtttctcggtcaagcctctgaagcagaagcaaatt
gtggatcgtgtgagctacctgctgcaggagatctatggaattgaaaacaaaaacaaccaa
gagaccaagccgtcggaggatgagaacagtgacaacagcaacgagtgtgttgtttgtctg
tcagacctcagagacaccatcatcctgccctgcagacacctgtgtctctgcaactcctgt
gctgacaccctgcgttaccaggccaacaactgtcctatctgcagactgcccttccgagcc
ttgctgcagatcagagctgtgaggaagaagcctgggccgctttcccctgtgtctttcagc
cctgtactggctcagaacatggaccatgatgagcactcgagctcagactcggttccccca
ggctttgagcccatctctctgctggaggcccttaacggcctgcactctgtgtccccctcc
atcccccccgccccactctacgatgatatcaacttctctggtggcctggtaggggagggc
cggccgctgggctccccagaacactccggggacgggggcctgcagaaggccaaagtcagc
aagtcacctgacagcaccctgaggtcgccctcatcacccatccaggaggaggatgaggag
aagctgtctgagttgtcggatgcccagcctcacacactgctctacagcagccctgctccc
accgaggccactgcagccgaggatgtaccggagtccgtctccccagatgatgaggacagg
ctgcactctggaggagagcgagagatccttcatgactgcagcagtgaacacagcagcctg
accaaaacagagagtgacccgccaggggacctttctctgccagggtcatcagagtcaacg
gagagcctgaagagtcagagtaccaactgctccagccagcccctcctgtgtccccccagc
agccttcacatggaggatgagcaacttgactcctaa
DBGET
integrated database retrieval system
