Coregonus clupeaformis (lake whitefish): 121550843
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Entry
121550843 CDS
T08357
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cclu04147
]
121550843
00535 Proteoglycans [BR:
cclu00535
]
121550843
00536 Glycosaminoglycan binding proteins [BR:
cclu00536
]
121550843
Exosome [BR:
cclu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
121550843
Proteoglycans [BR:
cclu00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
121550843
Glycosaminoglycan binding proteins [BR:
cclu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121550843
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
3keto-disac_hyd
Motif
Other DBs
NCBI-GeneID:
121550843
NCBI-ProteinID:
XP_045065728
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All DBs
Position
4:4090997..4276114
Genome browser
AA seq
1481 aa
AA seq
DB search
MDCKNGFQLGISLLVVVLVGHCEAFWFSWGSTDGTTEAPLLDNEGSGNPVTSSELPTPEN
IEEVGADIIDIASGIHTFVQTSDQNAKDSEAPKLITVRSQARNERPMEKGAGRPTSRGSK
PVDEIGVSLLHLIGDPPPDEITKIYGPDNSPGYVFGPDANTGQLARAHLPSPFYRDFSLL
FNLKPQSTKGGVIFSVTDASQKIMYVGVKLSPVKASRQNVIFYYTEPDSQVSYVAATFSV
HNLADQWNRFSISVLDDKVTFYINCDDQPQVVRFERSPDEMELEAGAGVFVGQAGGADPN
KFLGVIGELRVVGDPRAAERQCEEEGDDSDVASGDGGSGDVEGKLDGKKNGPEVQKYVWV
EDGRPTVTTTPPSSRPIQQPPVTRQQPEVSPKKETGPGVSRGEKGDRGEKGDRGPFGPKG
DSGSESGTRGEARGEKGVPGEKGMKGKAGFGYPGSKGDPGPAGPPGPPGSPGPAAEVVSR
GDGSVIQTVAGPRGLAGTPGPAGPEGPAGADGEPGDPGEDGSQGPVGPPGFPGTPGDSGL
KGEKGDRGEGQPGPSGPPGPPGPPAASRHDRPTFVDMEGSGFPDLETLRGLPGLPGPPGP
PGAPGPAVAGTGLSRSFGPQGPPGQDGAPGQPGLPGPPGTDGRTGVAGARGEKGDPGELG
LPGAVGAKGAQGLTGNPGQPGQGGLAGLPGPMGPVGQPGPPGPPGPSYHAGFDDMEGSGV
GVANGVSGARGPEGRQGPAGIPGLPGKSGFPGIPGEKGSEGLQGRDGRPGLDGFPGPNGQ
KGDRGERGETGRDGNGQPGPPGPPGPPGQIIYQTSSSYDGVGRGAGSQGGAGLPGQAGFP
GPIGPKGNMGDPGQPGYGVKGEKGEPGLIIGPDGSPLYLGGLSGEKGDRGPAGPVGPPGP
YGPSGIKGEFGMPGRPGRPGVNGYKGEKGEPSTGAGFGYPGVPGPPGPPGPAGPALPVDR
FNGYDASRNYPATKGEKGDHGAQGLPGTPGVASNLDILTFKNDLKGERGDSGVKGEKGEP
SGGYYDPHFRGQQGPPGPPGNQGLMGPKGDSIMGLPGPQGPPGSPGIGYDGRPGIPGPPG
PPGPPGSPSLPGAYRPNHSINIPGPPGPAGPPGTPGHTSGVTVLRSYDTMIATARRQSEG
TLIYIVDKTDLYIRVRDGFKQVLLGDYSPFYRDLDNEVAAVQPPAVVNYPQSQDHSANNG
AEHFSLGGTATHPIEPPPRKPVEIPRPAKPDNHNPNPRYPPQYDPRYPPQTDTRYPPQTD
GRYSHVQPENRYPVQPESRYPVTPQRRPVPLPVPQPASHLHTSGPGLHLIALNMPQVGNM
RGIRGSDFLCFQQARAVGLKGTFRAFLSSKLQDLYSIVRKSDRDSLPIINLKDQVLFNSW
ESMFSKTGGRMKENAPIYSFDGRDILRDSAWPEKMVWHGSSSEGHRQTDNYCETWRAGDR
AVTGLASSLQSGQLLQQSPSSCSSSYIVLCIENSYLSHSKK
NT seq
4446 nt
NT seq
+upstream
nt +downstream
nt
atggattgcaagaatggattccagctgggtatctcccttttagtggtagtcttggtgggc
cattgtgaggcattctggttttcctggggcagtacagacggtaccactgaggccccatta
ctggacaatgagggatctgggaacccagtgactagcagtgaattaccaacgccggagaac
attgaagaagtgggggcagatatcattgatatagcaagcgggatacatacgtttgtgcaa
acttcggaccagaatgcgaaggactcggaggcccccaagctgatcactgtgaggtcacaa
gccaggaatgagcgcccaatggaaaagggcgccggtcggcccacgtcaaggggaagtaaa
cctgtagatgagattggtgtctccctcctgcacctgatcggggaccctcccccagacgag
atcacaaagatctacggccccgacaacagccccggctacgtctttggtcccgacgccaac
acgggccagctggcacgcgcccatcttcccagccccttctaccgggacttctccctcctc
ttcaacctgaagccccagtccaccaagggcggtgtcatcttttcggtcacagacgcctct
cagaagatcatgtacgtgggcgtcaagctgtcgccagtcaaggcgagcaggcagaatgtc
atcttctactacacagagcccgactcgcaggtgtcgtacgtggcggccaccttctccgtg
cataacctggccgaccagtggaaccgcttctccatctccgtgctggacgacaaggtcacc
ttctacatcaactgcgacgaccaaccccaagtggtacgcttcgagaggtccccagatgag
atggagctggaggccggagccggggtgttcgtgggccaagccggaggggccgatcccaat
aagttcctgggggtgattggggagctgagggttgttggagacccccgggctgctgaaaga
cagtgtgaggaggaaggggatgactcggatgtggcttcaggggacggcggaagtggcgac
gtggaagggaaactggacgggaagaagaacggcccggaggtacaaaaatatgtgtgggtt
gaggacggtagaccgacagttacgactactcctccgtcgtcacgcccaattcagcagccc
ccggtgacccggcaacaaccagaggtgtctcccaagaaagaaacgggcccgggtgtatct
agaggagagaagggtgacagaggagagaaaggagacagaggtcctttcggtccaaaggga
gattctgggtctgagtcgggcacacgaggagaagcacgtggagagaagggagtgcctgga
gaaaagggaatgaagggaaaagcaggctttggataccctgggtcgaagggcgaccccggc
cccgctggtccccccggaccacccggctccccggggcccgcggcagaggtggtatcacgt
ggcgacggctccgtgattcagacggttgcaggtcccagaggactagctggaactccggga
cccgcaggccctgagggacccgcaggagccgacggagagcctggtgatcctggtgaagat
ggatctcaaggccctgttggaccgccaggcttccctggaacaccaggagactccggtctc
aaaggagagaagggtgaccgtggtgagggccagccgggccccagtggacctccagggccc
cccggacccccagcagcatccagacacgaccggccgacctttgtggacatggaaggctct
gggttccctgacttggagactcttcggggactgcctggtttgcctggccctcctggaccc
cccggggccccaggtcccgccgttgctgggacagggctctctcgctcgtttggcccccaa
ggtcccccaggacaagatggtgcccctggtcaaccggggttacccggcccacctggtact
gatggtcgaacaggagttgcaggggccaggggagagaagggtgatccaggtgaactcggt
cttccgggagcagtcggcgcgaagggcgcacagggattgactggcaaccccggtcagcca
ggacagggtggattggctggccttcctggaccaatgggaccagtgggacaacccgggcca
ccaggaccccccggaccaagctatcatgctggctttgacgacatggaaggctctggtgtg
ggagtggccaatggggtttctggagccagagggccagaggggcgacagggtcctgctggc
atccctggcctaccgggcaagtctggtttccctggtattcctggcgagaagggaagtgaa
ggactacaaggaagagatggccgaccagggttggacggtttccctggacctaatggacaa
aagggggacagaggagaaagaggtgaaactggtcgcgatggaaacggacagcctgggcca
ccaggtccacccggcccaccaggacaaataatctaccagacctctagcagctatgatggt
gtcggtagaggagctgggtcccagggtggagctggtctacctggccaagctggattccct
ggccctattggaccaaagggcaacatgggagacccaggccagcccggttatggagtcaag
ggcgagaagggcgagcctggcttaatcattgggcctgatgggagtcctttgtacctggga
ggattgtcgggtgagaagggcgacagaggacctgctggacccgtcgggcctcctgggccg
tatggaccttctgggataaagggtgaatttggaatgcccggaagacctggtcgtcctggt
gtaaacggatacaagggtgaaaaaggagagccatccacaggagccggatttggctaccca
ggtgtcccaggcccacctgggcccccaggaccagccggaccagctttgcctgtggaccgc
ttcaacggatatgacgcctcaaggaattatcctgcgacaaagggggagaaaggtgatcac
ggagctcaaggtctcccaggaacgccaggtgtggcctctaacttagacatactcacattc
aagaatgacctgaaaggagagcgcggggattcaggagtgaagggggagaagggagagcca
agtggtgggtattatgacccccattttagaggacaacaaggcccaccaggaccccctgga
aaccaaggacttatgggtccaaagggagattccatcatgggcctccctggtccccagggc
ccaccaggctccccagggatcggctacgacggtcgtccaggaatcccaggcccaccaggt
cctcccgggcccccagggtccccctcactaccaggggcctatagacctaaccactccatc
aatattcctggtccccccggacctgctggaccacctggaactcctggtcacacctcaggg
gtgacagttttgaggtcatacgacaccatgattgctactgcaagacgccagtcggagggc
accctcatctacattgttgacaaaacagatctctacatccgagtccgcgatggattcaaa
caagtcctgctcggtgactacagtcccttctacagagatctggacaacgaagtagcggca
gtccagcctcccgctgttgtcaactacccccagtctcaggatcactcggccaacaatgga
gctgaacacttctccctaggcggtaccgccacccaccccatcgagcctcctcctcgcaag
cccgtggagatccccaggcctgccaaacccgacaaccacaaccccaaccccagatacccc
cctcagtacgaccccagatacccccctcagactgacactaggtacccccctcaaacagat
ggccgctacagccatgtgcagcctgagaacaggtatcccgttcagcccgaaagccgatac
ccggtcaccccccagcgaagacccgttccccttcctgttccccagcctgccagtcacttg
cacacatcagggccaggactccacctgatcgccctgaacatgccccaagtgggcaacatg
cggggcattcgtgggtcagacttcctgtgtttccagcaggctcgtgctgtgggtctgaag
ggcaccttcagggctttcttgtcctccaagctccaggacctctacagcatagttcgcaag
tccgacagagacagcctccccatcataaacctgaaggatcaagtgctgtttaatagctgg
gagtctatgttcagtaagactgggggcaggatgaaggaaaatgcaccaatctactccttt
gatggcagagatatccttagggacagtgcatggcctgaaaaaatggtctggcacggctct
agcagcgagggtcaccgccagactgacaactactgcgagacatggagggcaggagaccgc
gcagtgacaggcctagcatcctcactgcagtccggccagctcctacaacagtcgcccagc
agctgctctagctcctacatagtgctgtgtatcgagaatagctatctctcacactccaaa
aaataa
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