Coregonus clupeaformis (lake whitefish): 121550908
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Entry
121550908 CDS
T08357
Name
(RefSeq) ran GTPase-activating protein 1-like isoform X1
KO
K14319
Ran GTPase-activating protein 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121550908
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121550908
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
121550908
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RanGAP1_C
LRR_6
CobT
BUD22
Nop14
Motif
Other DBs
NCBI-GeneID:
121550908
NCBI-ProteinID:
XP_041719281
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All DBs
Position
35:complement(24228416..24235835)
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AA seq
563 aa
AA seq
DB search
MATDVVAQLADSLAKTQVTEGELSYKGQGRKFDNAQSVEEMVKEIQEFKGLQALRLEGNT
YGVEAAQAIAKALETKSEFKYCYWSDMFTGRLRSEIPPALNSLGAALMTAGARLTLLDLS
DNAFGPDGVKGIEKLLKSTACHTLQELRLNNCGMGIGGGKILAAALTECYKQSSAQGTPL
GLKVFIAGRNRLENDGATALAQAFQLMGSLEEVHVPQNGINHPGVTALATAMQHNPQLRV
LNLNDNTFTKKGAIAMAQALKHLRSVQVINFGDCLVRSEGAIAIAEAVTEGLPILKELNL
SFGEITGEAALLVAQSVEGKATLEKLDLNGNCLGEECCDALREVMDGLNMGDLLGSLSDD
EGEPDEDEEEDDYEEDDEDEDEDEEEDSSVNQVSSPPSVPQPPDAASFLCFPSPEKLLKL
GTKRALLFEQQVDVADAGKTAEAFLKISSVYKEEDEEVKSAVLDSIDAILRKAFASPSFQ
GYNFVSSLLVMLGLLKSEDKVKPVRVVPGHLQALEYAVRQDYFPQEHIAVLEAFMSRHIQ
ALELCSSARNILKSTLEQVRPES
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggatgttgttgcacagttggccgattctctggccaaaactcaggtgactgag
ggagagttgagctataagggccaaggtcgcaaattcgacaatgcacaatctgtggaagag
atggtgaaagagatccaggagttcaaggggttgcaagcgctcaggctggaggggaacact
tatggggtggaggcagcacaggccatcgctaaagccctggagacaaagagtgaatttaag
tactgttactggagtgacatgtttactgggcgactgcgttctgagatccctccagccctg
aactccctgggtgcggccctgatgacagcaggcgccagactgaccttgctggacctcagt
gacaacgcctttggaccagacggggtgaagggcatcgagaagttgctcaagagcactgcc
tgtcacacgctgcaggaactgcggctcaacaactgcggcatgggcattggtggaggcaag
atcttagctgcagcgttgacggagtgctataagcagtccagtgcacagggcacccccctt
gggctgaaggtgttcatcgcaggcaggaaccgtctggagaacgatggggccactgccctc
gcccaggccttccagctgatgggtagtctggaggaggtgcacgtgcctcagaatgggatc
aatcaccctggggtgactgctctggccactgccatgcaacacaacccccagctccgggtc
ctcaacctcaacgacaacaccttcaccaagaaaggagctatcgccatggcacaggctctg
aaacatttgcgcagtgtccaggtgataaactttggagactgtctggtgcgttccgagggg
gctatagccatcgcagaggcagtcactgaggggcttcccatcctcaaggagctgaatctg
tcattcggggagattacaggagaagctgcactgctggtggcacaatcagtcgagggcaaa
gccacactggagaaattggacctaaatggtaactgcctgggggaggagtgctgtgatgcc
ctcagagaggtaatggatggcctgaacatgggagacctgctgggatcactcagcgacgat
gaaggggagcctgatgaggatgaggaagaggatgactatgaggaggatgatgaagatgag
gacgaggacgaggaggaggacagcagtgtgaatcaggtgtcctcccctccgtcagtgccc
caacccccagatgccgcctccttcctctgcttcccctctccagagaagctgctcaaactg
ggcaccaagagggccctgctcttcgaacagcaggtagatgtggctgatgctggtaagaca
gcggaggctttcctgaagatctcctctgtgtacaaggaggaagatgaagaggttaagagt
gctgtcctggacagtattgatgcaattctcaggaaagccttcgccagcccctccttccaa
ggttacaactttgtatcatcgctgttagtaatgctgggactcctcaagagtgaggacaag
gtgaagccggtgcgtgtggtgcctggtcatttgcaggcgctggagtacgccgtgcgtcag
gactatttcccccaggagcacatcgctgtgctggaggccttcatgtcccgacacatccag
gccctggagttgtgcagcagcgccaggaacatcctcaagtccacgctggagcaggtcagg
cctgagagctga
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