Coregonus clupeaformis (lake whitefish): 121550933
Help
Entry
121550933 CDS
T08357
Name
(RefSeq) trinucleotide repeat-containing gene 6B protein-like
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121550933
03036 Chromosome and associated proteins [BR:
cclu03036
]
121550933
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121550933
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
121550933
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
RRM_occluded
RRM_1
Motif
Other DBs
NCBI-GeneID:
121550933
NCBI-ProteinID:
XP_041719319
LinkDB
All DBs
Position
Unknown
AA seq
1950 aa
AA seq
DB search
MEDKKKKKEDKKKREASQKVTEQKVKVPESTKPSSTQSLATPGSVSPSPGPAPPSSPCPA
AGFVVPPGGNNANRTAVANGQPPTGTQRYMPREVPPRFRCQQDHKVLLKRGQPPLSCMLL
GGGSGRGDTPPLSQGEAPNATTSGATDPNLGSPSPSPPHSSPSSSVAASSTSTYANSTWG
VGSGSQHPSQGWEKVIVDGSDLEEWPSIVGGGRAGTEGAEQNGPNNISASRSDKCTQQQL
RPGGAGAGSSDSPSPPHSSPSSLTECVLSGVVWGSSSQPGMGGAAAATAEGPVLYNSKVS
SLPGTQESPLSVNSGIPGANFNPNANPSAWPALVQDGTTGVGAATTEAVPSSMTTSFSAS
TTHTHPLSSVNQAIHQHQLHEMPGRDGEHLHGDWGGLGPELGAGPNQGGRDLVDSGVVGG
SGNLSASSSSSWRALPPSSSNLNTGASKTDGWDREGGDAAQGQEANVWDFGSQGEKAGLA
GDEAWVRGNDVGSNTPVVSQGAWDGGTEEGWGGTQGSTGVRGSSNPAIGSSGGGGSSKSS
SSGGSGGGGGGISQDSASPTFATMTRAWDNQKGVDADDGVVGEWTGQGGRRSGGPSSSSG
GGSRAGSHNRHQEHSRHRSSNPPPNPEVALQSMLSRPDLDPRVLSNTGWGQTQVQQNVAW
DLDTGAASRSEGSSSPAFPSQAVNSTGRASTYPASNSAITDPSAGAHMPTMNTGPGPVPS
RGGWDDEPTCAPPSNMQNSAASRTPVEDIDGSQGKTSGGWGDISTSKSQDKGWGNEEQEG
RDRRGGGGSNWRDFGEQGGGRGSGWGGGQEEKGTAGGWKEMGREGWGQRGGGGGDWTQRE
PKTVSGGWGEGRGRGGGNTDKGSWGNLDEGGPQRGWGGGGDMGGKPHQDWSMKPHSAQIP
NSQAATLKAPNQQQHQSQTQQPPGGLGRSGGPPTQNQNQSSGWTAGPIPQIPVGPAEAPE
PSGWEEPSPQSISRKMEIDDGTSAWGDPTCYNSKNVNLWDKNSAPSGQPPPLQGHAQQGP
PTSVQQPPPRRQPGIPANRDSNPGNEPGMGPGMWGGGGNLAGQSVDNGTASWGQTSDAPS
GWGDPDDSSKAAGWGNPSSKSGSKSVQESWGKGEGPVPASRHSSWDEEEDVGGVWNSTGS
QGSSNYNSGGWGQGPGGRRGNLKGGGGDHWMNPMTRQFQNMGLMGEDLSLDKKLEGDKRG
MNDYNGEMRRGGRGGGGYRMPSSKDMGPGDMGPYSDKMGGHGVFGGSGGMPRGMHQPGMH
PMNPSQGLRGQVPHQFLSAQVPGPMLKQVPSPGSSVGGVGGVGGGVFPPQLSPQQLAVLS
NIYPHVQQFHLACQLLLQQQQQQQQQLMQNQRKFPQPQPIRQQPDPQQLARIMAILQQQR
QQQQGVVGGGSGSSKLSPSHLGGAPKQPMADSMPHPGMGGPLSDLHAKTQGMYSGLAPGG
NLSGLELGSMVGGVKDGGGGQQSRFKWMMEGHSPAPSPPDTSQHKNGPLPMPMKVRGGSP
YSQYELLGVDGLGMPPQGPSDNWHRTPGSKMGTMTGTSSWPPEFQPGVPWKGIQSADPES
DPYMTPSSVLGSPGPSSLSDSDHQLLRDNTGPNPSLNTLLPSPGAWPYSASDSPLGNAHS
TAKYSEYKPSWPPEPIGHNKPWKTNRVSSQLPRPPPGLTSQKQALTSPWGSGAPRLARGW
GEGGASQDSRFGTGSAWSDGVASRGSCWLLLSNLTPQIDGSTLRTICMQHGPLLTFHLGL
TQGSALIRYSTRQEAAKAQSALHMCVLGNTTILAEFVSDEEVARYFAHSQVGGTEGASPG
AGAGAAQGSSGTRTAVGNSGGGSPGSERAAAVGGGAGNNSGGNSGGGGVLGSVGPSSSGW
QSLDGTGSSPEATSAQGPGLGIFAQWSANGAGKGVGGGVEAGRSGLWGGVTPGYSSSSLW
GAPQMEDRHQMGSPAALLPGDLLGGGADSI
NT seq
5853 nt
NT seq
+upstream
nt +downstream
nt
atggaagacaagaaaaagaagaaagaggataaaaagaaaagggaagcttcccagaaggtg
actgaacaaaaagtcaaagtgccagaatcaactaagccctcctccacgcagtcactagcc
actcctggctctgtgtctcccagccctggccccgctccaccatcgtccccctgccctgca
gctgggttcgttgttcctccgggcgggaacaatgcaaaccggacggctgtggccaacgga
cagccccccaccggaactcagcgctacatgcccagagaggtgcccccacgattccgctgc
cagcaggaccacaaagtgcttctgaagaggggccagccaccactgtcctgcatgctgctg
gggggaggcagcggtaggggagacaccccccccctttcacagggagaggcccccaatgca
accacatctggagccacagatcccaatctgggttcaccttctccttcaccccctcactcc
tcaccctcatcttcagtcgctgcttcttctacttcaacttatgcaaattccacatggggg
gtgggctctggcagccagcacccctctcagggctgggagaaggtgatagtggatgggagt
gaccttgaggagtggcccagcattgtgggtgggggcagagcgggtaccgagggagcagag
cagaatggccccaacaacatcagtgcctcacggagtgacaaatgcacccaacagcagctg
aggccaggaggagcaggagctgggagttcagacagtccctccccaccccactcctccccc
tcgtcactcactgaatgtgtcctgtctggtgtcgtgtggggctcttccagtcagcctgga
atgggaggggccgcggcagcaacagcagaggggccagtgctctacaattccaaagtctcc
tctcttcctgggactcaggagagccctcttagtgtgaacagtgggattcctggtgccaac
ttcaaccctaatgccaacccttcagcctggcctgcccttgtgcaggatggaacgacaggg
gttggtgcagctaccaccgaagctgtgccctcatccatgacaacctccttctctgccagt
accacacatactcatccactctcctctgtgaatcaagctatccatcagcaccaactccat
gaaatgcctggcagggatggagagcatcttcatggggattgggggggcttggggccggag
ctcggagcaggaccaaatcaaggaggcagagatcttgtggacagtggggttgttggaggg
agcgggaatctctctgcctcttcttcctcttcatggagagccttgcctccctcctcctct
aacctcaacacaggtgcctctaagactgacgggtgggacagagaagggggagatgcagct
caggggcaggaggcaaacgtgtgggacttcggcagccaaggtgagaaagcagggttggca
ggagatgaggcatgggtcaggggaaatgatgttggctcaaataccccagtggtatctcag
ggagcatgggatgggggtacagaggagggttggggtggtacacaggggtcgacaggtgtc
aggggttccagcaacccagcaataggaagtagcggtggaggcgggagcagcaagagcagc
agcagtggaggtagcggaggcggtggtggcggcatatctcaggactctgcctcaccaacg
tttgctactatgacaagagcttgggacaatcagaaaggggttgatgctgacgacggagtg
gtgggggaatggacaggccaaggtggcagaagaagtggaggcccctcatcctccagtgga
ggagggtccagggctgggagtcacaatcggcaccaggagcattcccgccaccgatccagc
aacccaccccccaaccctgaagtggccttacagagcatgctcagccggccggacctggat
cccagggtgctgtccaacaccggatgggggcagacccaggtacagcagaatgtggcctgg
gacctggatacaggagcagccagtcgaagtgagggaagcagttcccctgcatttccatct
caagccgtgaattctactggtcgggcttctacttaccccgcaagcaacagcgcaattact
gatccatctgctggggcccacatgcctactatgaacactggtcctggccctgtaccttca
aggggtggctgggatgacgagccaacctgtgctccaccatccaacatgcagaattctgct
gcctctaggacgccagtggaagatattgatggcagccagggaaagacgagtggaggctgg
ggcgacatcagtacttcaaagagccaagacaaaggctggggcaatgaggagcaggagggg
agggaccgcagagggggcggtggaagtaactggagagattttggagaacagggtggcgga
agagggagtggctggggaggtggtcaggaggagaaagggactgcagggggttggaaagag
atgggtagggagggatggggacaaagagggggagggggaggcgactggacgcagcgtgaa
cccaagacagtcagtggaggctggggggaagggaggggcagaggtggaggcaacacggac
aaggggtcttggggtaacctagatgagggaggcccacagaggggttggggaggtggaggt
gacatgggtggcaaaccgcaccaggactggagcatgaagccgcattcagcacagatacca
aacagccaagcggcaacactgaaagccccaaatcaacagcaacaccaatcacagacccaa
cagccaccaggaggcttaggcaggtcaggaggtcctcccacccagaatcagaaccaaagc
tcaggctggactgctggccccatccctcagatccccgttgggcctgctgaggctcctgag
cccagcggttgggaggagccctcccctcagtccatcagccgcaagatggagattgacgat
ggcacttctgcctggggcgatcccacctgctacaacagtaagaatgtgaacctgtgggat
aaaaacagtgccccctctggtcagccaccgccacttcaaggccatgctcaacagggtcca
ccaacatccgtacaacagccaccaccaaggagacagcctgggatcccagctaaccgggac
tcaaaccctggcaatgaacctggaatgggcccaggtatgtggggagggggtggcaacctc
gctggacaatctgtggataatggcaccgcttcctgggggcagacttctgatgcaccatct
ggctggggagacccagacgactcaagcaaagccgctggttggggaaacccctcatccaaa
tctggctcaaagtcagtgcaagagagctggggcaaaggagagggccctgttccagcctct
cgacactccagctgggatgaggaggaggacgttggtggagtttggaacagcacaggctcc
cagggcagcagcaactacaactctggtggctgggggcaaggccccgggggaaggcgaggc
aacctcaagggtggaggtggagaccactggatgaaccccatgacacgacaattccaaaat
atgggactcatgggcgaggacttgagtcttgataaaaagctggaaggagataagagaggg
atgaacgactacaacggtgaaatgcggagaggaggaagaggtggaggaggctaccgtatg
cccagttccaaagacatggggcctggagacatggggccttacagtgacaagatgggtggt
catggtgtatttggtggcagcggtgggatgcctcggggaatgcaccagcctgggatgcat
cccatgaacccctcccaagggttacgcggacaagtgcctcatcaattcttgtctgctcag
gtgccaggccctatgctaaagcaggttccctctcctggcagcagtgttggaggagttgga
ggtgtcggcggaggggtgttcccacctcagctctccccacagcaacttgccgtgcttagt
aacatttacccccatgtgcagcagttccacctggcttgtcagctcctcctgcagcagcag
cagcaacagcagcagcagcttatgcagaaccagaggaagttcccccagccccagcctata
cgccagcagcctgatccacagcagctggctagaatcatggctattctgcaacaacagaga
cagcaacaacagggagtggtaggcggcggcagtgggagctctaaactgtccccatctcat
cttggaggggcaccaaaacagccgatggcagactccatgccccaccctggtatgggtggg
cccttgtcagatcttcatgccaaaacacaggggatgtactctgggcttgctcccggaggc
aatctgtctgggctggagctgggctccatggtggggggggtgaaggatggaggaggaggg
cagcagtcccgcttcaaatggatgatggagggtcactctccggccccctctcccccagat
acatcccaacacaagaatggtcctttacccatgcccatgaaagttcgagggggctcccca
tattcacagtatgagttgcttggggttgatggtttgggaatgccccctcagggcccctct
gacaactggcaccgtacccctggaagcaagatgggcaccatgactgggacatccagctgg
cccccagagttccagcccggagtgccctggaaaggaatccagagtgccgacccggagtct
gacccttacatgacccctagcagtgtgctgggctcccctggaccctccagcctcagcgac
tctgaccaccagttactgcgagacaacacagggccaaacccctccctcaacaccttgctg
ccttcaccaggtgcctggccctacagtgcctcagacagcccccttggcaatgcacacagc
acagcaaagtactctgagtacaaacccagctggcccccagagcccattggacacaacaag
ccgtggaagaccaatcgcgtcagctcccagctgccacgcccccctcctggactgaccagt
cagaaacaggccttaacatccccatggggcagcggagccccacggttggccaggggctgg
ggagagggcggagccagtcaggattcaagatttgggacaggctcagcgtggagtgatggt
gtggcctccagaggcagctgctggctgctgctcagcaacctcacccctcagatagatggc
tccacactacggactatctgtatgcagcacggccccctgctgacctttcacctcggcctg
actcagggcagcgccctgattcgctacagcacccgtcaggaagcagcaaaggcccagagt
gcactgcacatgtgcgttctgggtaacaccacaatcctggcggagtttgtgagtgatgag
gaagtggctcgctattttgcacattcccaggttggagggacggagggggccagcccaggg
gcaggggcaggggcggcccagggctcgtcaggaacgcgcacagcggtgggaaacagcgga
gggggctccccggggagtgaacgagcagcagcagtaggaggaggagcaggaaacaattcg
ggtggaaacagtgggggaggaggggttctgggtagtgtggggccttccagctctggctgg
caaagtttggatggtacgggcagctctccggaggccacctcagcccaaggacctgggctt
ggtatttttgctcagtggagcgccaacggggctgggaagggggtagggggtggggtggag
gcagggaggtctgggctctgggggggtgtgaccccaggttactccagcagcagcctgtgg
ggtgcaccccaaatggaggacaggcaccaaatgggcagcccagctgccctgttgcctggt
gacctgctgggaggaggggctgactccatctga
DBGET
integrated database retrieval system
