Coregonus clupeaformis (lake whitefish): 121551019
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Entry
121551019 CDS
T08357
Name
(RefSeq) ATP-dependent RNA helicase DDX39A
KO
K13182
ATP-dependent RNA helicase DDX39 [EC:
5.6.2.7
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cclu03041
]
121551019
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121551019
Spliceosome [BR:
cclu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
121551019
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
121551019
NCBI-ProteinID:
XP_041719472
LinkDB
All DBs
Position
Unknown
AA seq
427 aa
AA seq
DB search
MAENDVDNELLDYEEDEEPQGAPETAAPAGKKEVKGSYVSIHSSGFRDFLLKPELLRAIV
DCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCH
TRELAFQISKEYERFSKYMPTVKAAVFFGGLSIKKDEDVLKKNCPHIVVGTPGRILALIR
NKTLNLKNVKHFVLDECDKMLEQLDMRRDVQDIFRLTPHEKQCMMFSATLSKEIRPVCRK
FMQDPMEVFVDDETKLTLHGLQQYYCKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCV
ALSQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDETDAKTLNDVQDRFEVNVAELPEEIDIS
TYIEQSR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggctgagaatgacgttgacaatgagctgctggactatgaagaggatgaggagcctcag
ggagccccagagaccgctgccccagcaggcaagaaggaggtgaagggctcctatgtctcc
atccacagctctggcttcagagacttcctgctcaaaccagagctgctccgtgccatcgta
gactgtggctttgaacatccatctgaagttcaacatgaatgcattcctcaggccatcctg
ggcatggacatcctgtgccaggccaagtctggtatgggcaagacggcagtgttcgttctt
gccacactacagcagatcgagcccgtggatggacaggtgtcagttctagtaatgtgccac
acacgagagctggccttccagatcagcaaagagtacgagcgcttctccaagtacatgccc
acagtcaaggcagccgtgttcttcggaggcctgtccatcaagaaggacgaggacgtgctg
aagaagaactgccctcacatcgtggtgggaacccctggccgaatcctggccctcatccgc
aacaagaccctcaacctaaagaacgtcaagcacttcgtcctggatgagtgtgacaagatg
ctggagcagttggacatgaggcgtgacgtacaggacatcttcaggctcacaccccatgag
aagcagtgcatgatgttcagtgccaccctcagcaaggagattcgacctgtctgccgcaag
ttcatgcaggatcccatggaggtgtttgtagatgatgagaccaagctgactctgcatggt
ctgcagcaatactactgcaagctgaaggacagcgagaagaaccgcaagctctttgacctg
cttgatgtgctggagttcaaccaggtggtgatctttgtcaagtcagtgcagcgctgtgtg
gcgctatctcagctactggtggagcagaacttccctgccattgccatccacaggggcatg
gctcaggaggagaggctgtcccgctaccagcagttcaaggacttccaaaggcggatcctg
gtggccaccaacctgtttggccgagggatggatatcgagcgggtcaatattgtcttcaat
tacgacatgcctgaggactcagacacctacttacacagggtggcccgtgctggccggttt
ggaaccaagggtctggccgtgacctttgtgtcagacgagacagacgccaagactttgaat
gacgtgcaggaccgcttcgaggtcaatgtggccgagctgccagaagagatcgacatctcc
acttacattgagcagtccagatga
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