KEGG   Coregonus clupeaformis (lake whitefish): 121551041
Entry
121551041         CDS       T08357                                 
Name
(RefSeq) transcription activator BRG1
  KO
K11647  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    121551041
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cclu03021]
    121551041
   03036 Chromosome and associated proteins [BR:cclu03036]
    121551041
Transcription machinery [BR:cclu03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     121551041
Chromosome and associated proteins [BR:cclu03036]
 Eukaryotic type
  Histone modification proteins
   HDAC complexes
    REST complex
     121551041
  Chromatin remodeling factors
   BAF complex
    121551041
   PBAF complex
    121551041
   GBAF(ncBAF) complex
    121551041
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C SnAC Bromodomain HSA BRK QLQ ResIII DEAD HDA2-3
Other DBs
NCBI-GeneID: 121551041
NCBI-ProteinID: XP_041719500
LinkDB
Position
Unknown
AA seq 1641 aa
MSTPDPPMGGTPRPGPSPGPGPSPGAMMGPSPSPGSAHSMMGPSPGPPASGHPHPQQGPS
GYPQENMHQMHKPMEGMHEKGMPDDPRYGPMKGMGMRPGGGHIGMGPPPSPMDQHSQGYP
SPLGGSEHSPSPVPANGPPPGPMMPSGPGGVPMEGSDPQAMGQQNRGGVPGPSGVSGPGG
VGPGGPTPFNQNQLHQLRAQIMAYKMLARSQPLPDHLQMAVQGKRPMPGMQQPGMPNMPP
SSGPGAGPGAGPGQPPAHYNRPLGMVGPNMPPPGPSGVPPGMQGQPTNGPPKQWPEGPMV
NAAAPSSAPQKLIPPQPTGRPSPAPPSVPPAASPVMPPQTQSPGQPSQPPPMVLHQKQNR
ITPIQKPRGLDPVEILQEREYRLQARITHRIQELEHLPGSLAGDLRTKANIELKALRLLN
FQRQLRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQK
HQEYLNSILQHAKDFKEYHRSITAKLQKATKAVATYHANTEREQKKENERIEKERMRRLM
AEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTDLVRAHKADQALKDKKKKKKKKKKKK
PESAEGQPPALGPDGEPLDETSQMSDLPVKVIHVDSGKILTGLDAPRAGQLDTWLEMNPG
YEVAPRSDSEDSGSEEEEEEEEEPQPSQAPTEEKKKIPDPDTEDVSEVDVRYIIEGAKQD
VDDEYNSAEAAFARGLQSYYAVAHAVTETVDKQSTLLVNGQLKHYQIKGLEWLVSLYNNN
LNGILADEMGLGKTIQTIGLITYLMEHKRINGPFLIIVPLSTLSNWVYEFDKWAPTVVKV
SYKGSPQARRAFLPILRSGKFNVLLTTYEYIIKDKQVLAKLRWKYMIVDEGHRMKNHHCK
LTVVLNTHYLAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCTTFEQWFNAPFAMTGE
KVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQRVLYRHMQ
AKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQQIEESFSEHLGFTGGVVSG
PDLYRAAGKFELLDRILPKLRVTNHKVLLFCQMTSTMTIMEDYFGWRNFKYLRLDGTTKA
EDRGMLLKTFNDPASQYFVFLLSTRAGGLGLNLQSADTVVIFDSDWNPHQDLQAQDRAHR
IGQRNEVRVLRLCTVQSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILE
HEEQDEVGAPGGWRAGGALEEDEVPDDETVNQMIARSEEEFDQFMRMDLDRRREDARNPK
RKPRLMEDDELPTWIIKDDAEVERLTCEEEEEKIFGRGSRQRKEVDYSDSLTEKQWLKAI
EDGNLEDLEEEVRHKKTTRKRKRDRDDMPGPATPSSSGGGGGRSRDKDEEVKKAKKRGRP
PAEKLSPNPPSLTKKMKKVVDTVIKYKDGSNGRQLSEVFIQLPSRKELPEYYELIRKPVD
FRKIKERIRNHKYRSLNDLEKDVMLLCSNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEK
EKEEESEGEDSEEDEEEVDEGSESESRSVKVKIKLGRKEKEGRGKGQRRRGRGSRAKPVV
SDDDSEEEQEEAGSASGSEED
NT seq 4926 nt   +upstreamnt  +downstreamnt
atgtccaccccggacccccccatgggagggacgccccggccgggcccctccccaggacca
gggccttctccaggagccatgatgggccccagcccttccccgggctctgctcatagcatg
atgggacccagcccaggtcccccagcctctggacacccccaccctcaacaggggccctca
ggatatcctcaggagaacatgcaccagatgcacaaacctatggaaggcatgcatgagaag
ggcatgcctgacgaccctcgctacggaccgatgaagggcatgggaatgagaccaggtgga
ggccacatcggaatgggaccccctcctagccccatggaccaacattcccaaggctacccc
tctccactggggggttctgagcactctcccagccctgtgccagccaatggccctcccccc
ggccccatgatgccctccggcccaggaggtgtccccatggagggcagtgacccccaggcc
atgggccagcagaaccgcggtggtgtcccaggtccgagtggtgtttctgggccaggcggg
gttggtccgggtggacccacccccttcaaccaaaaccagctgcaccagctcagggcccag
atcatggcctacaagatgctggctcgcagccagcccctgccagaccacctgcagatggcc
gtgcagggcaagaggcccatgccagggatgcagcagccagggatgcccaatatgccccct
tcctctgggcccggagcagggcctggggcggggcccggacagccaccagcacactacaac
agacctcttggaatggtaggccccaacatgcctcctccaggaccctcaggtgttccccct
ggtatgcagggccagcccaccaacggaccccctaaacaatggcccgaagggcccatggtg
aatgctgctgctccatccagtgccccccagaagctgattccccctcagcccactggcaga
ccctcccctgctcccccctccgtgcccccggctgcctccccggtcatgccccctcagacc
cagtcccctgggcagccctcccagcccccacccatggtgctgcaccagaaacagaaccgc
atcacacccatccagaagccccgtggcctggacccagtggagatcctccaggagagagag
tacaggctgcaggctcgtatcacccaccgtatccaggagctggagcatctaccagggtct
ctggccggagacctgcgcaccaaagccaacatcgagctcaaagccttgaggctgctaaat
ttccagagacagctgcgtcaggaggtggtggtttgtatgcgtcgtgacacggccctggag
acagccctcaacgctaaggcctacaagcgcagcaagcgccagtccctccgcgaggcccgc
atcacagagaaactggagaagcaacagaagatcgaacaggagcgcaaacgacgacagaaa
caccaggaataccttaacagcatcctgcagcatgctaaagacttcaaggagtaccaccgc
tccatcacagccaagctccagaaggccaccaaagccgtggccacgtaccacgccaacact
gagcgcgagcagaagaaagagaacgagcgcattgagaaggagaggatgaggaggctgatg
gctgaagatgaggagggctaccgtaaactcattgaccagaagaaagacaagcgtctggcc
taccttctgcagcagacggacgagtatgtggccaacctcaccgatctggtcagagcccac
aaggctgatcaggccctcaaggacaagaagaaaaagaagaagaagaagaaaaagaagaag
ccagagagtgcagagggccagcctcctgccctgggacccgatggagagcctctggatgag
accagtcagatgagtgacctacctgtgaaggtgatccatgtagacagtgggaagatcctg
acgggtctggatgcaccccgggctggccagctggacacctggctggagatgaaccctggg
tatgaagtggctcctcgttcagacagtgaggacagtggctcagaggaagaggaggaggaa
gaggaggagccccagccctcccaggctcccaccgaggagaaaaagaagataccagaccct
gacacagaggacgtgtccgaggtcgacgtccgctacatcatcgagggagccaagcaggat
gtggatgatgagtataacagtgcagaggcggcgttcgcccgaggtctgcagtcttactac
gctgtggcccacgccgtcactgagacggtggacaaacagtccacactgctggtcaacggg
cagctcaaacattaccagatcaagggcttggagtggctggtgtctctctacaacaacaac
ctgaacgggatcctggctgatgagatgggtctgggcaagaccatccagaccatcggcctc
atcacctacctcatggagcacaagcgcatcaacggccccttcctcatcatcgtgcccctt
tcgactctgtccaactgggtgtacgagtttgataagtgggctccaactgtggtaaaagtc
tcttacaaaggctctccacaagctcgccgcgcattcctacccatcctgcgcagtggcaag
ttcaacgtgctgctcaccacctacgagtacatcatcaaagacaagcaagtgctggctaag
ctgcgctggaagtacatgatagtggacgagggccaccgtatgaaaaaccaccactgtaag
ctgactgtggttctgaacacccactacctggccccgcggcgtcttctgctgaccggcacc
ccgctgcagaacaagctgccggagctctgggctctgctcaacttcctgctgccgaccatc
ttcaagtcctgcacaaccttcgagcagtggttcaatgcccccttcgccatgaccggagag
aaggtggatctgaacgaggaagagaccatcctgattatccgtcgtttgcacaaagtgctc
cgccccttcctgctgcgcagactgaagaaggaagtggagtcccagctgcctgagaaggtg
gagtatgtgatcaagtgtgacatgtcggccctgcagagagtgctgtacagacacatgcag
gctaagggagtgctgctcaccgacggctctgagaaagacaagaagggtaaaggaggcacg
aagaccctgatgaacaccatcatgcagctgaggaagatctgtaaccatccctacatgttc
cagcagatcgaggagtccttctctgagcatttgggattcactggaggcgtagtgtcggga
cctgacctgtaccgcgccgctgggaagtttgagctgctagaccgtatcctgcccaagctg
agggtcaccaaccacaaggtcctgctcttctgtcagatgacttccaccatgaccatcatg
gaggactactttggctggcgcaactttaagtacctgcgtctggacggaaccaccaaggct
gaggatcgtgggatgcttttgaagaccttcaatgacccagcctctcagtactttgtgttc
ctgctcagcaccagggccggagggctgggcctcaacctgcagtctgctgacaccgtggtc
atctttgactcagactggaacccacatcaggacctgcaggcccaggacagagcccaccgt
attgggcagcggaacgaggtgcgtgtgttgcgtctctgcaccgttcaaagtgtggaggag
aagatcctggcggcagccaagtacaagctgaacgtggaccagaaggtcatccaggccggc
atgttcgaccagaagtcgtcaagtcacgagcgccgtgccttcctgcaggccatcctggag
catgaggaacaggacgaggtcggggccccggggggctggcgcgctgggggggcgttggag
gaggacgaggtgcctgatgacgagaccgtcaaccagatgattgccaggagcgaggaggag
tttgaccagttcatgcgaatggacctggaccggcgccgtgaggacgcccgcaaccccaag
aggaagccccgtttgatggaggatgacgagctgcccacctggatcataaaggatgatgcc
gaggtggagaggctcacctgtgaggaggaggaggagaagatatttggtcgcggctctcgc
cagcgcaaggaggtggactacagcgactcactcacagagaagcagtggctcaaggccata
gaggacggtaatctggaggacctggaggaggaggtgcgtcacaagaagacgacccggaag
cgcaagcgagaccgtgacgacatgcccggccctgccacacccagctccagtggtggtggc
ggcggtcgcagccgtgacaaggacgaagaggtcaagaaggccaagaaacgcggacgcccc
ccagctgaaaaactgtcccctaaccccccctccctcaccaagaagatgaagaaggtggtg
gacactgtcatcaagtacaaggacggaagcaatgggcgccagctgagtgaagtcttcatc
cagctgccctcccgcaaggagctgcccgagtactacgagctcatccgcaagcctgttgac
ttcaggaagattaaggagaggatccgcaaccataagtaccgcagcctgaatgacctggag
aaggatgtgatgctgctttgtagcaatgcccagaccttcaacctggagggctctctgatc
tatgaggactccatcgtgctgcagtcagtctttaccagcgtcaggcagaagatcgaaaag
gagaaggaggaggagagcgagggagaggacagtgaggaagatgaggaggaggtggacgaa
ggctctgagtctgaatctcgttcagtgaaggtgaagataaagctggggaggaaggagaag
gagggcagagggaagggccagcgccggaggggccgtggctcccgggccaaacctgtggtg
agcgatgacgacagcgaggaggaacaggaagaggcgggttcggccagcggcagtgaggag
gactga

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