Coregonus clupeaformis (lake whitefish): 121551089
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Entry
121551089 CDS
T08357
Symbol
alyref
Name
(RefSeq) THO complex subunit 4
KO
K12881
THO complex subunit 4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
cclu03015
mRNA surveillance pathway
cclu03040
Spliceosome
cclu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121551089 (alyref)
09122 Translation
03013 Nucleocytoplasmic transport
121551089 (alyref)
03015 mRNA surveillance pathway
121551089 (alyref)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121551089 (alyref)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121551089 (alyref)
03041 Spliceosome [BR:
cclu03041
]
121551089 (alyref)
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121551089 (alyref)
TREX complex
121551089 (alyref)
Spliceosome [BR:
cclu03041
]
Complex C
Other components
EJC/TREX
121551089 (alyref)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
121551089 (alyref)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
121551089
NCBI-ProteinID:
XP_041719558
LinkDB
All DBs
Position
Unknown
AA seq
271 aa
AA seq
DB search
MADKMDMSLDDIIKQNRQQRGGAGGRGGGRGRGRGGSGGGRGGGVGRGAAGGGFGGRGGG
SGPMRNRPNLSRGRARPTPYSRPKQLPDKWQHDMYSNHGFNASAGGGGGGAGVETGGKLL
VSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGV
PLDGRPMNIQLVTSQIDTQRRPPMQGMNRGGGGMNRGRGGVFRGMQRGRGAGRGGGGGGR
GRGGRGGSAKPLSAEELDAQLDAYNARMETS
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atggccgataagatggatatgtctctagacgacatcatcaagcagaacaggcagcagaga
gggggcgcaggaggccgtggtggtggaagaggccgtggccggggaggctctggcgggggc
cgaggtggtggtgttggccgtggagctgccggtggaggctttggaggccgaggtggagga
tcgggccccatgaggaaccgaccgaacctgagccgtggcagagcaagacctacgccatac
agcaggcccaagcagcttcctgataaatggcaacacgacatgtacagcaatcatggcttc
aatgccagtgctgggggcggcgggggtggcgctggtgtggaaaccggagggaagcttctt
gtctccaatctcgactttggcgtttcagacgcagatattcaggagctctttgcggagttt
ggtacactgaagaaggcagctgttcactacgaccggtcgggcaggagcttaggcacggca
gacgtccactttgagcggaaggcagatgctctgaaagctatgaaacagtacaacggtgta
ccacttgatggacgtcccatgaacatacaacttgtcacatcacagatcgacacacaaaga
cgaccacccatgcagggtatgaaccgaggaggtggtggcatgaacaggggtcgtggcggt
gtgttcagagggatgcagagaggacgtggagcaggtcgtggtggtggtggaggaggcagg
ggccgaggtggccgcgggggaagcgccaagccactttccgctgaagagctggatgcccag
ctagatgcctacaatgccaggatggaaaccagctaa
DBGET
integrated database retrieval system