KEGG   Coregonus clupeaformis (lake whitefish): 121551089
Entry
121551089         CDS       T08357                                 
Symbol
alyref
Name
(RefSeq) THO complex subunit 4
  KO
K12881  THO complex subunit 4
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013  Nucleocytoplasmic transport
cclu03015  mRNA surveillance pathway
cclu03040  Spliceosome
cclu05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    121551089 (alyref)
  09122 Translation
   03013 Nucleocytoplasmic transport
    121551089 (alyref)
   03015 mRNA surveillance pathway
    121551089 (alyref)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    121551089 (alyref)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cclu03019]
    121551089 (alyref)
   03041 Spliceosome [BR:cclu03041]
    121551089 (alyref)
Messenger RNA biogenesis [BR:cclu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     121551089 (alyref)
    TREX complex
     121551089 (alyref)
Spliceosome [BR:cclu03041]
 Complex C
  Other components
   EJC/TREX
    121551089 (alyref)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    121551089 (alyref)
SSDB
Motif
Pfam: RRM_1 FoP_duplication
Other DBs
NCBI-GeneID: 121551089
NCBI-ProteinID: XP_041719558
LinkDB
Position
Unknown
AA seq 271 aa
MADKMDMSLDDIIKQNRQQRGGAGGRGGGRGRGRGGSGGGRGGGVGRGAAGGGFGGRGGG
SGPMRNRPNLSRGRARPTPYSRPKQLPDKWQHDMYSNHGFNASAGGGGGGAGVETGGKLL
VSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGV
PLDGRPMNIQLVTSQIDTQRRPPMQGMNRGGGGMNRGRGGVFRGMQRGRGAGRGGGGGGR
GRGGRGGSAKPLSAEELDAQLDAYNARMETS
NT seq 816 nt   +upstreamnt  +downstreamnt
atggccgataagatggatatgtctctagacgacatcatcaagcagaacaggcagcagaga
gggggcgcaggaggccgtggtggtggaagaggccgtggccggggaggctctggcgggggc
cgaggtggtggtgttggccgtggagctgccggtggaggctttggaggccgaggtggagga
tcgggccccatgaggaaccgaccgaacctgagccgtggcagagcaagacctacgccatac
agcaggcccaagcagcttcctgataaatggcaacacgacatgtacagcaatcatggcttc
aatgccagtgctgggggcggcgggggtggcgctggtgtggaaaccggagggaagcttctt
gtctccaatctcgactttggcgtttcagacgcagatattcaggagctctttgcggagttt
ggtacactgaagaaggcagctgttcactacgaccggtcgggcaggagcttaggcacggca
gacgtccactttgagcggaaggcagatgctctgaaagctatgaaacagtacaacggtgta
ccacttgatggacgtcccatgaacatacaacttgtcacatcacagatcgacacacaaaga
cgaccacccatgcagggtatgaaccgaggaggtggtggcatgaacaggggtcgtggcggt
gtgttcagagggatgcagagaggacgtggagcaggtcgtggtggtggtggaggaggcagg
ggccgaggtggccgcgggggaagcgccaagccactttccgctgaagagctggatgcccag
ctagatgcctacaatgccaggatggaaaccagctaa

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