Coregonus clupeaformis (lake whitefish): 121551148
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Entry
121551148 CDS
T08357
Name
(RefSeq) phospholipid-transporting ATPase ABCA3-like
KO
K05643
ATP-binding cassette, subfamily A (ABC1), member 3
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
121551148
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cclu02000
]
121551148
Transporters [BR:
cclu02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
121551148
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_23
AAA_22
AAA_15
RsgA_GTPase
SRP54
AAA_29
Cas6_I-A
Motif
Other DBs
NCBI-GeneID:
121551148
NCBI-ProteinID:
XP_045066856
LinkDB
All DBs
Position
35:complement(21353668..21420758)
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AA seq
1707 aa
AA seq
DB search
MAIARQFGLLLWKNYLQQKRQILVTLVEIALPLFFAGILIVLRQRVPFKDYPNATLYQSF
SVDGLPNPLDQFYHHYQLAYVPGNASVVRRVAEDVQRSLGPAISSVRGFETEEQFEDFVR
KDPLSRKVLAAVVFEHSFTHDDESLPQQVSYHLRFTFSPRNAPAKEKSELNINNDFDWHT
LNLFPLFQLPGPREQYDLQGGTPGYFREGFLAVQHAVNRAIMRSYNSTGAAWLLSRTRVV
LRRFPFPPFIYDVFILAIQNQLPLLLVLSLTYTSLNIVRAVVQEKERKLKEYMRMMGLSN
WLHWMAWFLMFFLFLSISMFFVTLLFCIKVSPNGAVLTYSDPTLVLVFLLVFAVATINFS
FMISAFFSRANVAAAAGGFIYFLSYLPYLFLWPRYDLLSHAQKVSACLISNVAMAMGAQL
LGMFEGKGTGIQWCNLFEPVTVDDDFSLAQVLGLLLLDALLYGLVAWYVEAVFPGEYGVP
LPCYFFLLPSYWCSSPRMAMEKEEEDVEKALKGEFIEEEPAGLVSGVKIKHLNKEFKVGN
KTRQAVKDLTVNMFEGQITVLLGHNGAGKTTTLSMLTGLFPPSSGRAYINGYDICQDMAL
IRHSLGLCPQHDVLFDNLTVREHLLFYAQLKGYSQEKIPAEVDRIIRILNLEDKRHSHSK
TLSGGMKRKLSIGIGLIGDSKVVMLDEPTSGMDPSARRATWDLLQGEKRGRTILLTTHFM
DEADLLGDRIAIMAGGELQCCGSPLFLKNKYGAGYHMVIVKDTLCNVSEITRLVHMYVPN
ATLESSAGAELSYILPKESTNRFELLFAELEMNREELGIASYGASVTTMEEVFLRVGKLV
DSSLDIQAIQLPALQYQHERRSHDWTLDDASSYSAMTDVTDFTDSGTLISEDCSNIKLNT
GARLYMQQFYAMFLKRALYSWRNWKVIVAQFLVPLVFTVLALVVAKTFPGRHDSPQLRLA
LGRYGPTTVPVALEPGKGPLAIALAQVYSSQLAGQKAQDVSISDFTEYVLTKTEEEGGAF
NERCVVGASFCGGTGKFAEVTAYFNNQGYHTAATALMMVDNTLFKMLAGPNASIMTGNMP
MPRNVSESAQSQLTEGQTGFAIAINLMYGMASLSSTFALLLVTERSIKSKHVQQVSGVYL
SNFWFSALLWDLVNFFLPCVLMLVVFRVFAVKAFVADNHLVDVLLLLLLYGWAVVPLMYL
LSFLFSTAASAYTRLTIFNIISGTATFLTVTIMTIPELKLQDLSRILDKVFLLFPNYCLG
MSFSQFYQNYQFITFCTSNPMATGFCRFLNITYQENYFSMSEPGVGRFLVALSLQGVVFI
TLLFIIEMQCVKTLCRFLTHLARRRKQLPLIGDVALLPEDRDVAEERKRVLECQPIVESM
VGSPLILQDLSKVYSSGETVLAVDRLSLAVGKGECFGLLGFNGAGKTTTFKMLTGDETVT
SGDAYIDGYSILRDVKKVQQRIGYCPQFDAVLDHMTGRETLCMYARLRGIPEKYVSGCVE
NVLRSLLLDPHADKLCRSYSGGNKRKLSAAVALIGGPPVIFLDEPSTGMDPVARRLLWDA
VTRTRESGKAIIITSHSMEECEALCTRLAVMVNGQFKCLGSPQHLKSKFGSGYTLLAKVR
VDKEVEDSDLQLFKDFIESTFPGSLLADEHQGMVHYHLTDKTLTWAQVFGTLEAAKEKYN
IDDYAVSQISLEQVFLSFAQFQHCSRK
NT seq
5124 nt
NT seq
+upstream
nt +downstream
nt
atggcgatagcacgccagtttggattactcctgtggaagaactaccttcagcagaagcgt
cagatcctggtgactctcgtggagatcgccctgcccctgttcttcgcgggcatcctcatt
gtactgcgtcagcgcgtgcccttcaaggactaccccaacgccaccctctaccagagcttc
tctgtggatggcctgcccaacccgctggaccagttctaccatcactaccagttggcctac
gtgccgggcaacgccagtgtggtgcggcgggtggcggaggacgtgcagcgcagcctaggc
cccgccatcagttcagtgcgtgggtttgagacggaggagcagtttgaggactttgtgagg
aaggaccctctgtctcggaaggttctggctgctgtggtgtttgagcactcctttactcac
gatgacgagtctctgccccaacaggtcagctaccacctgcggttcacctttagtccccgt
aatgccccggccaaggagaagtctgagctaaacatcaacaatgactttgactggcacacc
cttaacctgttccccctcttccaacttcccggtcccagggagcagtacgacctccagggg
ggcacgcccggttacttccgcgagggcttcctggcggtgcagcatgcggtcaaccgggcc
atcatgcgttcctataacagcacgggagcagcctggctcctctcccgcacccgggtggtc
ctccgccggttccccttcccaccgttcatctacgacgtgttcatactggccatccagaac
cagctgcccctcctcctggtgctcagcctcacctacacctccctgaacatcgtgagggcc
gtggtgcaggagaaggagaggaagctcaaggagtacatgcggatgatgggcctcagtaac
tggctgcactggatggcctggttcctcatgttcttcctcttcctctccatctccatgttc
ttcgtcacgctgctcttctgcatcaaggtcagccctaatggagctgtgttgacctatagt
gaccccaccctggtattagtcttcctgctcgtcttcgccgtggcaaccatcaacttcagc
ttcatgatcagtgccttcttctcaagagccaacgtggcggcggcggcgggaggcttcatc
tacttcctgtcctacctgccgtacctgttcctgtggcctcgctacgacctgcttagccac
gcccagaaggtgtccgcctgcctcatctccaatgtggccatggccatgggagcgcagcta
ctgggcatgtttgagggcaaaggcacggggatccagtggtgtaacctgtttgagccggtg
acagtggacgatgacttctccctggcccaggtgctggggctgctgctgctggatgccctg
ctctatggtctggtggcctggtacgtggaggctgtgttcccaggggagtacggagtcccc
ctgccctgctacttcttcctactgccatcctactggtgcagtagcccccgcatggccatg
gagaaggaagaggaggacgtggagaaggcactgaagggagagttcatcgaggaggagcca
gccggcctggtctcaggagtcaagatcaaacacctgaacaaggagttcaaagtgggtaac
aagacgcggcaggctgtcaaggacctgacggtgaacatgttcgagggccagatcacggtt
ctgctggggcacaatggagccggaaagaccacaacactgtccatgctgacaggtctgttt
cctcccagcagtggcagggcctacattaacggctatgacatctgtcaggacatggctctg
attcgccacagcctgggcctgtgtccgcagcacgacgtgctctttgacaacctcactgtc
cgggagcacctgcttttctacgcacagctgaaggggtattcccaggagaagattccggcg
gaagtggaccggatcatcaggatcctgaacctggaggacaaacggcattcccactccaag
acgctgtcaggtgggatgaagaggaaactatccatcggcatcggcctcatcggagactcc
aaggtggtgatgctggatgagcccacgtcgggcatggacccgtcggcgcgacgggccacc
tgggacctgctccagggcgagaaacgcgggcgcaccatcctgctgactacgcacttcatg
gacgaggccgacctgctgggggaccgaatagccatcatggctgggggagagctgcagtgc
tgcgggtcgccgctgtttctcaagaacaaatacggtgctggctaccacatggtgatcgtg
aaggacacgctgtgcaacgtgtctgagatcacacggctggtccacatgtacgttcccaat
gccacgctggagagcagtgccggggctgagctctcatacatactgcccaaagagagcacc
aacaggtttgagctgctgtttgcagagctggagatgaacagagaggagctaggcatcgcc
agctatggagcctctgtcaccaccatggaggaggtcttcctcagagtggggaagctggtg
gattctagcctggacatccaggccatccagctgccggcgctgcagtaccaacacgagaga
cgctcccacgactggaccttggacgacgccagcagctacagcgccatgaccgacgttacc
gacttcactgacagcggcacgctcatctccgaggactgctccaacatcaagctcaacaca
ggggccagactgtacatgcagcagttctatgccatgttcctgaagcgggcgctctatagc
tggaggaactggaaggtgattgttgcccagttcctggtgcccctggtgttcaccgtgctg
gccctggtggtggcgaagaccttccccgggcgccacgactcaccgcagttgaggctggca
ctgggccgctacgggcccaccaccgtacccgtggccctggagcccggcaagggacctctg
gcaatcgccctggcacaggtgtattcctcgcaattggccggccagaaagcccaggatgtc
agtattagcgacttcactgagtacgtgctcaccaagaccgaggaggagggcggggcattc
aacgagcgctgcgtggtgggtgcatcgttctgtggcggcacggggaagttcgccgaggtc
acggcctacttcaataaccagggctaccacacggccgccacggccctgatgatggtggac
aataccctgttcaagatgctggccgggcccaacgcctcgattatgacgggaaacatgcca
atgccccgcaacgtctccgagagcgctcagagtcagctgacagaaggtcagacgggattc
gccatcgccatcaacctgatgtacggtatggcgtccctgtccagcaccttcgccctgctc
ctggtcaccgagcgctcaatcaaatccaagcacgtgcagcaggtcagcggcgtctacctc
tccaacttctggttctctgcactgctctgggacctggtcaacttcttcctgccctgcgtg
ctcatgctggtggtgttccgggtgtttgcggtcaaggccttcgtagcggacaaccacctg
gttgacgtgttgttactcctgctgctatacggctgggccgtcgtccccctcatgtacctg
ctcagcttcctgttctccactgccgcctccgcttacacccgcctcaccattttcaacatc
atcagcggcaccgccaccttcctcaccgtcaccatcatgaccatcccagagctaaagcta
caggacctgtctcgtatcctggacaaagtgttcctgctcttccctaactactgcctgggc
atgtccttcagccagttctaccagaactaccagttcatcaccttctgcacctccaacccc
atggccacgggcttctgccgtttcttgaacatcacgtaccaggagaactacttctccatg
tcggagccgggggtgggccgtttcctcgtggccctgtccctgcagggtgtagtcttcatc
accctcctcttcatcatcgagatgcagtgtgtcaaaaccctctgccgcttcctcacccac
ctcgccaggagacgtaaacagctgcctctgataggggatgtggccctactgccggaggac
agggacgtagcggaggagaggaagagggttctggagtgtcagcccatagtagagtctatg
gtggggagccctctcatactgcaggacctcagcaaggtctacagcagtggtgaaacagta
ttggcggtagacagactctctctagcagtggggaaaggagagtgttttggcctgctgggt
ttcaatggagcagggaagaccaccaccttcaagatgctcacaggggacgagaccgtcacc
tctggtgatgcctacattgacggctacagcatcctgagggatgtcaagaaggtacagcag
aggattggctactgcccgcagttcgacgctgtcctggatcacatgacaggaagagaaacg
ctgtgcatgtacgctaggctccgggggataccagagaaatacgtgtcgggctgcgtggag
aacgtgctacggtccttactactagatccccatgctgacaaactgtgccgcagctacagt
gggggcaataagaggaagctgagtgcggctgtggctctgattggtggacccccggtcatc
ttcctggacgagccatccaccggcatggacccggttgctaggcgtctgctgtgggacgcc
gtgacgcgcacccgagagtctggaaaggccatcatcatcacttctcacagtatggaggaa
tgcgaggccctgtgcaccaggctggctgtgatggtgaacggtcagtttaagtgtctgggc
agtccccagcacctgaagagtaagtttggcagcggctacacactgctggctaaagtacga
gtcgacaaggaggtggaggacagcgacctgcaactcttcaaggacttcatcgagagcacc
ttcccaggaagtctactggcagatgaacaccagggtatggtgcactaccacttgactgac
aagactctcacctgggcacaggtgtttggcaccctggaggcagccaaagagaagtacaac
atcgacgactatgctgtgagccagatctccctggaacaggtgttcctcagcttcgcccag
ttccagcactgcagcaggaaatag
DBGET
integrated database retrieval system
