Coregonus clupeaformis (lake whitefish): 121551229
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Entry
121551229 CDS
T08357
Name
(RefSeq) transcription factor Sox-9-A-like
KO
K18435
transcription factor SOX9 (SOX group E)
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121551229
Transcription factors [BR:
cclu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
121551229
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
Sox_N
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
121551229
NCBI-ProteinID:
XP_041719718
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Position
35
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AA seq
487 aa
AA seq
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MNLLDPFLKMTDEQEKCFSDAPSPSMSEDSVGSPCPSGSGSDTENTRPSDNHLLLGPDGV
LGEFKKADQDKFPVCIRDAVSQVLKGYDWTLVPMPVRVNGSSKNKPHVKRPMNAFMVWAQ
AARRKLADQYPHLHNAELSKTLGKLWRLLNEGEKRPFVEEAERLRVQHKKDHPDYKYQPR
RRKSVKNGQGEPEDGEQTHISSGDIFKALQQADSPASSMGEVHSPGEHSAQSQGPPTPPT
TPKTELAAGKADLKREGRPLQEGTGRQLNIDFRDVDIGELSSDVISNIEAFDVNEFDQYL
PPHGHPGVPGVNGTQTGYTGSYRGISASSIGQVGAGGHGWMSKQQHSLAALGGGGGSGGE
QGQSQGRTTQIKTEQLSPSHYSEQQGSPPQHVTYGSFNLQHYSASSYPSITRAQYDYSDH
QGGANSYYSHAGAQGSGLYSFSSYMSPNQRPMYTPIADPTGVPSVPTQTHSPQHWEQQPV
YTQLSRP
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgaatctactcgaccccttcctgaagatgacagacgaacaggagaaatgtttctctgac
gctccaagccccagcatgtctgaggattcggtcggctcgccgtgcccgtccggttccggt
tccgacaccgagaataccaggccgtccgataatcatctcttactgggtccagacggcgtg
ctcggcgagttcaagaaggctgaccaagacaagttccctgtatgtatcagagatgcggtg
tctcaggtgctgaagggttacgactggaccttggtgcccatgccagtccgagtgaacggc
tccagcaaaaacaagccccatgtcaagagacctatgaacgctttcatggtgtgggctcaa
gccgcccggaggaaactggcggaccagtacccacatctccacaatgcagaactcagcaaa
accctcggcaaactttggagattgctcaacgaaggcgagaagcgtccgttcgtagaggag
gctgagcgcttgagggtgcagcacaagaaagatcaccccgactacaagtaccagcccaga
cggagaaaatccgtgaagaacgggcagggcgaaccagaggacggcgagcaaacccacatt
tcttccggtgacatctttaaagctctccagcaagcagactcgcccgcgtccagcatgggc
gaagtgcattcacccggtgaacattcagcccagtcccagggcccacctacaccaccgacc
acccccaaaacagagctggctgcgggcaaggccgacctgaagcgcgagggccgccccctg
caagagggcacgggccgccagctaaacatcgacttccgggacgtggatatcggtgagctg
agcagcgacgtcatctccaacatcgaagccttcgatgtcaacgagtttgaccagtacctg
ccgccccacgggcaccccggcgtgcccggcgtcaacggcacccagacgggctacacgggc
agctaccgtggcatcagcgccagttccatcggccaggtgggtgctggaggccacggctgg
atgtccaagcagcagcactccctcgccgccctgggtggaggtggaggtagtgggggagag
caaggccagagccaggggagaaccactcagatcaagacggagcagctgagccccagccac
tacagtgagcagcagggctctcctccccagcacgtcacctatggttcattcaacctgcag
cactacagcgcctcatcttacccctccatcacccgcgcacagtatgactattctgatcac
cagggcggcgccaactcttattatagccatgcaggtgcccaaggctcagggctctattcc
ttcagcagctatatgagccccaaccagaggcccatgtatacccccatcgctgaccccacc
ggagtgccctcggtgcccacccagacccacagtccacagcactgggagcagcagcctgtc
tacacccagctctccaggccctga
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