Coregonus clupeaformis (lake whitefish): 121551237
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Entry
121551237 CDS
T08357
Name
(RefSeq) transcription factor Sox-8-like
KO
K09270
transcription factor SOX7/8/10/18 (SOX group E/F)
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121551237
Transcription factors [BR:
cclu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
121551237
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
Sox_N
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
121551237
NCBI-ProteinID:
XP_041719731
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All DBs
Position
35:complement(20836471..20840094)
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AA seq
471 aa
AA seq
DB search
MLKMTAEHDKSISDPPCSPAGTTSSMSQDDSDSDAPSSPTGLDLHGSLLAGIGKKLDGED
DDRFPACIRDAVSQVLKGYDWSLVPMPVRGNGSLKNKPHVKRPMNAFMVWAQAARRKLAD
QYPHLHNAELSKTLGKLWRLLSENEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKPG
QSDSDSGAELGNHMYKAEPGLLAGIADGHHHPEHAGQPHGPPTPPTTPKTDLHHGGKQDM
KHEGRRLLDSGRQNIDFSNVDISELSTDVISNMEAFDVHEFDQYLPLNGHASTAGAGVDH
HGHHGPNPASGAGSYTSYSHATVNSAIWSRKSAAMSASSSTSIEAVPQHRAHIKTEQLSP
SHYSGDSHSHSSPSHSEYSHSHTAQTCVTSSAAAAAASFSSSQCDYTDLQSSNYYNPYSG
YPSSLYQYPYFHSSRRAYHGSPILNSLSIPPTHSPPTSNWDQPVYTTLSRP
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaaatgaccgcagagcatgacaagtccatcagcgacccgccgtgtagcccggcg
gggactaccagctccatgtcgcaggatgactccgactcggatgcaccctcgtcgccgacg
ggattggatttacacggatcactgctcgctggtatcggaaagaaactggacggcgaggat
gatgacagattcccagcctgcatacgtgacgcggtgtcgcaggttctcaagggatacgac
tggtccctcgtccccatgccggtgcggggaaatggctcgctgaaaaataaaccccatgtc
aaaagaccaatgaacgcgttcatggtgtgggcgcaagctgcgcgcagaaagctcgcggac
caataccctcatctgcacaacgccgaactgagcaaaactttggggaagctatggcgctta
ctatcagagaatgagaagcggccattcgtggaggaagcggagaggcttcgggtgcagcac
aaaaaagatcaccccgactacaagtaccagcctcggcgtcggaagagtgtgaaacctggg
cagagtgactcagactctggtgctgagctggggaatcacatgtataaggctgaaccagga
ttgttggcgggcatagccgatggacaccaccaccctgaacatgcaggccaaccccatggt
ccacccacaccccccaccacccccaaaacagacctgcaccacgggggcaaacaggacatg
aagcacgagggacggcgcctgctggacagcggccgacagaacatagacttcagcaacgtg
gacatctccgagctcagcaccgacgtcatcagcaacatggaggccttcgacgtgcacgag
tttgaccagtatctaccgctcaacggccatgcctccaccgctggcgcaggcgtggaccac
catggccaccatggaccaaacccggcgtctggcgccggctcgtatacatcatacagccat
gccacagtgaacagcgccatttggagccgcaagagtgccgccatgtctgcctcttcctca
acttctattgaggcggtcccacagcaccgggcccacatcaagacggagcagctgagcccc
agccactacagcggggacagtcactcccacagctccccctcccactcagaatactcccac
tcccacacagcccagacctgcgtgacatcatccgccgctgcagctgcagcctccttctcc
agctctcagtgtgactatacagacctccagagctccaactattacaacccctactcaggc
tacccttccagcctgtaccagtacccctacttccactcctccagaagggcgtaccacggg
agccccatcctcaacagtttgtccattccccccacccacagtccccctacatccaactgg
gaccagccggtgtacaccaccctatccagaccgtag
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