Coregonus clupeaformis (lake whitefish): 121551320
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Entry
121551320 CDS
T08357
Name
(RefSeq) integrin beta-2-like isoform X2
KO
K06464
integrin beta 2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04145
Phagosome
cclu04514
Cell adhesion molecules
cclu04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
121551320
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
121551320
09142 Cell motility
04810 Regulation of actin cytoskeleton
121551320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121551320
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cclu04147
]
121551320
04515 Cell adhesion molecules [BR:
cclu04515
]
121551320
04090 CD molecules [BR:
cclu04090
]
121551320
Membrane trafficking [BR:
cclu04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
121551320
Exosome [BR:
cclu04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
121551320
Cell adhesion molecules [BR:
cclu04515
]
Integrins
Integrin beta subunits
121551320
CD molecules [BR:
cclu04090
]
Proteins
121551320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
Integrin_b_cyt
Integrin_B_tail
PSI_integrin
EGF_integrin
vWA_SIBA-E
EGF_2
Motif
Other DBs
NCBI-GeneID:
121551320
NCBI-ProteinID:
XP_041719849
LinkDB
All DBs
Position
4:8208606..8235961
Genome browser
AA seq
787 aa
AA seq
DB search
MAVPSFCHQEMYPCVSFLLLLMGRGVLSQEVEVCSKSVVNSCSDCIISGAYCVWCKQLNF
TKPGEQEAARCDTRAQLVERGCMEGDIISPINIFSFSKNSTLSNSTFDKDEPIQLRPQEV
NLKLRPGLPQTFKLDFQRVEGYPVDLYYLMDLSYSMEDDLRSIKTLGNELFNALQRITKK
GRIGFGSFVDKTVLPFTNTNPEKLNKPCAETEKYCQPAFGYRHVLSMTENKAEFEREVNK
QRISGNLDSPEGTLDAIMQAAVCGDRIGWRNSSTRLIVLTTDDGFHMAGDGKLAGILEPN
DERCYMDNKLYTKSNVMDYPSVGQVANQLEKNNIQPIFAVTKKMEKVYRELSKMIPKSEV
GVLSADSHNVVELIENAYNRLSSKVTVTHDALPDNVRVTYTPLCPEGGPTRDKGVCDNVG
VGQMVSFNVTVTADECMDSEMSFLIGPLGIKDKLKVSLSTRCKCECHDPVMVNNTYCDRK
GQVNCGMCSCKAGFVGQKCECSIGEKDESSLRAACRKDNGTECEGRGDCVCGICQCYALQ
GGSTYYGTHCECENESCEKFQNKLCGGNGKCRCKNCECNPGYEGTTCQCKKSDERCRTPS
GSVCSNRGTCQCNQCKCIEGYQRPYCLTCPACQTPCITKGKCIECLGFQTGPFSKNCSQA
CKSINEFKMVETLPPGKPCDVRDVENCRVFFTISQLDGEDNYNAQILKTRECPELPNIYA
IIGGSIAGVAVIGIMILLLIKFLMYLQDQKEFRKFENEKQKSKWSQADNPLFKNATTTVA
NPTFTGE
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atggctgttccctctttctgtcaccaggaaatgtatccgtgtgtgtctttcctgctcctg
ctgatgggcagaggtgtgctctcccaggaggtggaagtatgttccaaatcagtggtgaac
tcctgcagtgactgcatcatatcaggagcgtactgcgtgtggtgcaaacaactgaacttc
accaaaccaggggagcaggaagcagctcgctgtgacacccgggctcagctagtagagagg
ggctgcatggaaggagacatcatatctcccatcaatatattttctttttctaagaacagc
accctgtccaacagtacatttgacaaggacgaacccatccagctccgtcctcaggaggtc
aatctgaagctcagaccaggactgcctcagacgttcaagctggattttcaaagagtggag
ggctatcctgttgatctctactacctgatggatctctcttactccatggaggacgatttg
aggagcatcaagactctgggaaatgaactgtttaatgctctgcaacgcatcacaaaaaaa
ggacgaataggtttcggctcttttgtagacaagactgtcctgccgttcactaacaccaac
ccggagaagctgaataagccatgcgccgaaactgagaagtactgccaacctgcttttggc
tacagacatgttcttagcatgacggagaacaaagctgagtttgagagagaggtcaacaag
cagcgcatctctgggaacttagactcccccgaagggaccctggacgccatcatgcaggct
gcggtctgtggggacaggattggctggaggaatagcagcactcggcttatcgttctgacc
accgacgatggcttccacatggcaggggatggcaagctggctggcatactggagcccaat
gatgagagatgttacatggacaacaagctgtacacaaagagcaatgtcatggactaccca
tctgttggtcaagtggctaatcagttagagaagaacaacattcagccaatctttgctgtg
acgaagaaaatggagaaggtatacagggaactcagtaaaatgatccccaagtctgaggtg
ggagtgttgtcagctgactcccataatgtcgttgaattgattgaaaatgcctacaatagg
ctctcctccaaagtgacggtgactcatgatgctctccctgacaatgtgagagtcacttac
actccactttgtcctgaagggggacccacaagggacaaaggagtatgtgacaatgtgggt
gtgggacagatggtgtctttcaacgtaacagtgacagcggatgaatgtatggacagtgaa
atgtctttcctgattggcccgttgggtataaaagacaagctgaaggtgagcttgtcgact
cgctgcaagtgtgagtgtcatgaccctgtgatggtcaataacacgtactgcgacaggaag
ggccaagtcaactgtggcatgtgcagttgcaaagccggcttcgtgggccagaagtgtgag
tgctccatcggggagaaggacgagagctctctgagagcggcatgccggaaggacaacggc
acggagtgcgagggacgaggggactgtgtgtgtggcatttgccagtgctacgccttacaa
ggcggcagcacctactacggcacgcactgcgagtgtgaaaacgagagctgcgagaagttc
cagaacaaactgtgtggagggaacgggaaatgccgttgcaaaaattgcgaatgcaacccc
gggtatgagggcaccacctgccaatgcaagaagtcggacgagcggtgtcgcacaccaagc
gggagtgtgtgcagcaacaggggcacatgccagtgtaaccagtgcaagtgtatcgagggc
taccagcgaccctactgtctgacctgccccgcctgccaaaccccctgtataaccaagggg
aaatgcattgagtgtctgggctttcagacaggcccattcagtaagaactgctcccaggcc
tgtaagagtattaatgaattcaagatggtggagacgttgccacctggtaagccttgtgat
gtgagggatgtggagaactgccgagtgttctttaccatttcacagttggatggagaggac
aactacaacgcccaaatactaaagaccagagagtgtcccgagttgccaaacatctacgcc
atcattggaggctccatcgcaggcgtggctgtcatcggcatcatgatcctgctcctcatc
aaattcttaatgtacctccaagaccagaaggagttccgcaagtttgagaatgagaagcag
aaatccaagtggtcgcaggcagacaatccactattcaagaatgcaaccaccaccgtggct
aaccctacctttactggagaataa
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