Coregonus clupeaformis (lake whitefish): 121551329
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Entry
121551329 CDS
T08357
Name
(RefSeq) eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like isoform X1
KO
K03267
peptide chain release factor subunit 3
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121551329
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121551329
03012 Translation factors [BR:
cclu03012
]
121551329
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121551329
Translation factors [BR:
cclu03012
]
Eukaryotic type
Release factors
121551329
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
PAM2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
121551329
NCBI-ProteinID:
XP_041719861
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Position
35:complement(27831155..27841548)
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AA seq
580 aa
AA seq
DB search
MDPRDAAPDSWEQEDDVEAPVDGKLDSEFAALNVNAKPFVPNINAVEFVPSFFQKGPSED
PDSGADVQPVVATMEAAETAAPVENGDSEMTTEESWDLKGAEPNEEEPGGGPGGDVGPIV
VEEILEEEVMEEEEEEVPIMPKVVALPPDAPKKEHVNVVFIGHVDAGKSTIGGQIMYLTG
MVEKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDA
PGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIILV
NKMDDPTVNWSLERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEPVESCTWY
TGLPFIPHLDSLPNLNRASDGPVRLPIVDKYKDMGTVILGKLESGSISKAQQLVMMPNRH
TVEVLSLLSDDVETDDAAPGENLKLRLKGIEEEEILPGFILCNAENLCHSGRTFDAQIVI
IEHKSIICPGYNAVLHIHTCIEEVQITALICLVDKKSGEKSKTRPRFVKQDQVCIARLRT
AGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVAERD
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atggacccgagagacgctgcccctgattcctgggaacaagaggatgatgttgaggccccg
gtcgacgggaaactcgattccgaattcgctgccctcaacgtgaatgccaaaccgtttgtc
cccaacataaatgctgtcgaattcgtcccgtccttctttcagaaaggcccctcggaagat
cctgattccggtgcggacgttcaaccagttgttgccaccatggaggccgcagaaactgca
gccccggtggagaatggcgactctgaaatgaccacagaggagtcgtgggacctgaaaggg
gcggagcccaatgaggaagaaccaggaggagggcctggtggcgacgtgggaccaatagtt
gtcgaggagattctggaggaggaagtcatggaggaggaggaggaagaagtgccaatcatg
cctaaagtggttgccctcccaccagacgcgcccaagaaggaacatgtgaacgtggtgttc
attggtcatgttgatgctggcaaatctaccatcggaggacaaatcatgtatttaacgggc
atggtggagaagagaactctggagaagtatgaaagagaagccaaggagaagaacagggaa
acctggtacctctcctgggctctagacactaaccaggaggagcgagacaaggggaagact
gtggaggtgggccgagcgtactttgaaactgagaaaaagcactttaccatcctggatgcg
ccaggccacaaaagctttgtgcccaacatgatcggaggagcttcgcaagctgacctggct
gtactggtgatctcggccaggaagggagagtttgagacgggctttgagaagggtggacag
acacgggagcacgccatgttggccaaaacggcgggggtgaagcatctgatcatcctcgtc
aacaaaatggacgaccccacagtgaactggagcctagagaggtacgaagaatgcaaggag
aaactagtgccatttttaaagaaggttggcttcaaccccaagaaagacattcacttcatg
ccctgctccggcctcacaggagccaacctcaaggagcctgttgagtcgtgcacttggtat
acagggttaccattcattccacatctggacagtttgccaaacttaaacagagcgagcgac
ggaccagtcagattacccattgtagacaaatacaaggacatgggtactgttatcctgggg
aaactggagtcggggtccatcagtaaagcacagcagcttgtcatgatgccaaacaggcac
acggtggaggtgttgagcctgctgagtgatgacgtggagacagatgatgctgctcctgga
gagaacctgaagctgagactgaagggcatcgaggaggaggagatcctgccaggcttcatc
ctctgtaacgctgagaacctctgccactctggacgcacctttgacgcccagattgtcatc
attgaacacaagtccattatctgccctggttacaatgcagtcctccacatccacacctgc
atcgaagaagtgcaaattacggccttaatctgtctggtagacaagaagtcgggagagaaa
agtaagacgcgaccgcgcttcgtgaaacaggaccaggtgtgcatcgcccgtctgcgcacc
gccggaaccatctgccttgagaccttcaaagacttcccccagatgggacggttcacccta
cgggatgaaggtaagaccattgccatcggtaaggtgttgaagctcgttgctgagagggac
tga
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