Coregonus clupeaformis (lake whitefish): 121551366
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Entry
121551366 CDS
T08357
Name
(RefSeq) protein shortage in chiasmata 1 ortholog isoform X1
KO
K28108
shortage in chiasmata 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cclu03036
]
121551366
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Meiosis-specific proteins
Others
121551366
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
121551366
NCBI-ProteinID:
XP_041719919
LinkDB
All DBs
Position
18:complement(18846400..18871390)
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AA seq
1563 aa
AA seq
DB search
MSEDGCSFSSHIFSAVKYRALDYSSEASTSLKLTMNWFALPMPYHLGSSDLYPHTGNPPE
VTYRKPWSRGNVISNCKLFVSGSVLDDLGIKGQPTYSLEKLNVSLNQVRVDLLEVIPSSN
PNSQLDLDRDEAAWLLREARKDKGHFVCNESFSKSTGEKMSPRHLHDDLVMPEEVLFVDH
LPQFRKHLPSLKAKLSRLRNLPVSDPLFSSTGGILSEEAIFRHSAAYEVPLDAETESSKT
CSNTDEDFSNESLLNEESLMLPVEMDTCTLKMEDCIPFSNIHKLLNVVPELIEDQTSCLD
MLTKATPSDALESVDISQFEVPRLPVDDSHCEINEILLDLKSSDHLVLPTQMEMDLPLTP
SPKPSLTQLCLASSQLPAEQISPLYRYYLVSEKDQEEMEQALWRAEKHPDLVLGFLLAEP
QKSESVVQFQPLTKALKLLGIGRDNSVRLDEGMELSLLGTSSPGLTGMNGNVSSDFTESM
MISEQPHLMETLSSKIEDFTLLSPCQMDNILSESVDDSKLSGPPSEIKVKSILKNATPMV
VPYHQESERAGNTVVSAKAVATSQEKERTGNVALTAQASISSKEKERSGNVVFSTQAVST
SREKEIAGSMAISAAQATTTTYLEKFDHAVRPQKKEEGLPDQRANVSKLPTPRPGVRDSH
MSLPVAKSQKDLDPLSTFMMLRSQQITYVSVSPQNHTSTPVPQVEQQTPQPPTTEMRPGL
DVKPVAYAVTGNDIRAPEAIIQPVPEDRHNSNVIHVQATESQFWAYRELQAFVLPCLSRA
RELGLTNSACGDFSTLYPDHTRFLLKQQEKELSIRQGQDPEALYDHVALIHVLVTVKDLL
FKCDLSTAVEYLSKATEACAGQNLDRLVRKLEIVLYLSQKKQEHNPKILALQEQLTTWVQ
SKSNGVQNSNVLVIITVDLDCARAMLIKGLSQVTGEAVAAVCPEESRSKLEGAKVLDSLQ
HSCCVVVCSQHMGADFPWHCFSLVVEYGHTEHSPWAAVCTERNITHITFQTRISNSSVSD
PESWSLEQSVPFVLFVTEGLLSCPLLLQILESTYNMTVLERSHSQSLQMLGGTHHYAVIT
VDESTAVIIQEQEELCQERACESLVIRLTALSLQYSCCWLILHCQQDSGLTSEGFNNLVL
VYSSLVLFGLKTEGLDVKVLIVSEVVDIAKWICQIAFHTLLSSERDPSSYLDREWLSVMP
SEEERCLLGFPCVNPLVAQLMLSRGSSLHWLLGASLSQLQELLPEVPHKVIKLFSDTTSL
YKLTAATSSPESHTDLTHQKDHNSPTEPRATSRDNQYTHTDPHTSRNPHSDCNPHPHCAP
HTHHDPEPLNPNCSLAGSPSAESVAGNFYEESSVMTKEDSADIQVDLSPSFGFQQAPFQH
TWSHNPWEVEEESDEVKFVGWNRGRGAEEWTGSAPLHQETCGSPRDYVPENQFQTGLSSS
FSYSTNTQRPAYSDNQMYSFSTVGYSDQQHYPDVSHYPSLASHRGALSWGGSSSGSPYST
AQWRRDMSVSPDYGTSYRTGMERKRRAEGPEMVGTVVTPLKRGKLSYEKVPGRSDGQTRL
RFF
NT seq
4692 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaagatgggtgctctttctcaagtcatattttctcagcagtcaaatatagagct
ctcgactattcttctgaggcttctactagtctcaagttgaccatgaactggtttgccctg
ccgatgccctaccatctgggcagcagtgacctctaccctcacactggtaacccccctgag
gtcacctacaggaaaccatggagcagaggaaatgtgatttccaactgcaaactgtttgtc
agtggatctgtactagatgacttggggattaaaggacaaccaacatactctcttgaaaag
ctgaatgttagtctgaaccaggtgagagtggatcttctggaggtgataccgagctccaac
cccaactctcagcttgatttagatagagatgaagcagcgtggctcctgagagaggctagg
aaggacaagggacactttgtctgtaatgaatcctttagcaagagcacaggagagaaaatg
agcccaagacatctgcatgatgatcttgtcatgccggaggaggttctgtttgttgatcac
ttgccacagttcaggaaacatctgccctccttgaaagccaagttatccagactgaggaac
ctgcctgtgtcagaccctcttttcagctccactggaggcatcctgtcagaggaagctata
ttcaggcactctgcggcctatgaggtaccccttgatgcagagacggaaagctccaaaacc
tgttcaaacactgacgaggactttagcaacgagtcgttgttgaatgaagagtctctgatg
ttacctgttgaaatggacacctgcacactcaagatggaagattgcatccctttttcaaat
attcataaactattgaatgttgtaccagaattgatagaggaccaaacctcttgcctggat
atgctcactaaagcaactccctcagatgcactggagtcagtggacatatcccagtttgaa
gtgccacggctgccagtcgatgactctcactgtgagattaatgaaatcctgctggatctc
aagtcatcagatcacttggtgttgcctactcagatggagatggacctacccctcaccccc
tctcccaagcccagcctgacccagctctgtctggcctcctcccaactcccagctgagcag
atctctccactctacagatattatttagtgtctgagaaagatcaggaggagatggaacag
gcactttggagggcagagaagcaccctgacttggtgcttggctttcttttggcagagccc
cagaagtcggaatctgttgtgcagttccagcctttgaccaaagccttgaagttattaggg
attggtcgggacaactctgtgagactcgatgaaggaatggaactatcacttctgggaacc
agctcaccaggactgacagggatgaatgggaatgtttcctctgacttcactgagagtatg
atgatctcggagcaaccccaccttatggagacattgagcagtaagatagaggacttcaca
ctactatcaccctgccagatggacaatatactgagtgaatctgtagatgactctaagttg
tcaggcccaccaagtgagataaaagtcaagtctatcctgaagaatgcaacacccatggtt
gtgccatatcatcaggagagcgagagagctgggaatacagtcgtttcagcaaaggctgtt
gccacttcccaggagaaagagagaactgggaatgtggccctcacagcccaagcatctatt
tcttccaaagagaaagagagatctgggaatgtggtcttttcaacgcaggctgtttccact
tctcgtgagaaagagatagctgggagtatggccatctcagcagcacaggctaccaccact
acttacctggagaaatttgaccatgcagttagacctcagaagaaggaggagggtttacct
gaccagagagctaatgtatccaaactcccaacccccagacccggtgtgagagacagtcac
atgagtctcccagtggctaaatctcagaaggacttagaccctctgtccactttcatgatg
ttaaggtcccaacagataacctacgtctctgtgtcgcctcagaaccatacaagcacccca
gtgccacaggtggagcagcagacaccacagccacctacgacagaaatgaggcctggctta
gatgtcaagcctgttgcctatgcagtcacaggaaatgacatcagagcccctgaggcaatc
attcagcctgtccccgaggacagacataacagcaatgtcatacatgtccaagccacagag
agtcagttctgggcgtacagagagctgcaggcatttgtcctgccctgcctgtccagagcc
agggagctggggctgactaactcagcctgtggagacttcagcaccctgtacccggaccac
acacgcttcctactgaaacagcaggagaaggagctcagcattcgacagggccaggaccca
gaggctctgtatgaccatgtggcactgatacatgtccttgtgacagtgaaggacctgctc
ttcaagtgtgacctcagcactgcagtggagtacctgtccaaggccacagaggcctgcgcg
gggcagaatctggacaggttggtgagaaagctggagattgtgctgtacctcagtcagaaa
aaacaagagcacaaccctaagatactggcactgcaggaacagctgaccacatgggtgcag
agcaagagcaatggggtccaaaactccaacgttctggtgataataacagtggacttggac
tgtgccagagctatgctcattaaaggcctgagccaagtcacaggtgaggctgtagctgca
gtatgtcctgaggaaagtagaagtaagctggagggtgcgaaagtgctagatagcctgcag
catagctgctgtgtggtggtgtgtagtcagcacatgggagcagacttcccctggcactgt
ttctccctggtggtggagtacggccacacagaacactccccctgggctgctgtctgcaca
gagaggaacatcacacacattaccttccagaccagaatatctaattcctctgttagtgac
cctgagtcttggtccctggagcagagtgtcccctttgtgttgtttgtgactgaggggctg
ctcagctgtcctctgttgcttcagatactggagtcaacgtataatatgactgtattggag
aggagccactctcagtccttacagatgcttggagggactcaccactatgctgtgattaca
gtagacgagagcactgcagtcatcattcaagagcaggaggagctgtgtcaggagcgggcc
tgtgagagtctagtgattagactgactgctctgtctctgcagtacagctgctgctggctc
atccttcactgccagcaggactcagggttgaccagtgagggcttcaacaacctggtgttg
gtctactcctctctggtgctgtttggcctcaagactgagggcctggatgtcaaggtgcta
attgtatcagaagttgtggacattgccaaatggatctgccagatagccttccatacactg
ctgtccagtgagagagatccttccagctacctggacagagaatggctttctgtgatgccc
tcagaggaggagaggtgcctgctagggttcccctgtgtgaaccctctggtggcccagctg
atgttgagtaggggctcctctctccactggctcctgggggcctccctctcccagctgcag
gagctgctccctgaggtccctcacaaagtcatcaagctcttcagtgacacaacatctctg
tacaagctgactgcagctacctcctctccagagtctcacactgacttgacgcatcagaaa
gaccacaatagccccactgagcctagggccacaagcagagacaaccaatacacccacacc
gaccctcatacaagccgcaacccacactccgactgcaaccctcacccacactgcgctcca
cacacacaccacgacccagaaccattaaaccccaactgctcccttgctggctcccccagt
gctgagagtgtagctgggaacttctatgaagaaagctctgtcatgaccaaggaggacagt
gcagacatccaggtggacttgagtccctccttcggcttccagcaggccccttttcagcac
acctggagccacaacccatgggaggttgaggaggagagtgatgaggtgaagtttgtaggc
tggaatagaggaagaggagcagaggagtggacaggcagtgcacccctacaccaggagacc
tgtggctcccccagagactacgtgccagaaaatcaatttcagacaggcctctcatcctca
ttcagctacagcacaaacacacagagaccagcgtactccgacaaccagatgtactcgttc
tctacagtagggtacagtgaccagcagcactaccctgatgtcagccactaccccagcctg
gcctcgcatagaggagctctgtcatgggggggcagtagcagtggcagcccctacagcact
gcccagtggaggagagacatgagtgtgtcacctgactatgggaccagttacagaacgggg
atggagaggaagaggagagcagaaggcccagagatggttggcacagttgtaacgccattg
aagaggggaaagctcagttatgagaaggtgccaggccgaagtgatggacagacaagacta
aggtttttctaa
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integrated database retrieval system
