Entry |
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Name |
(RefSeq) protein shortage in chiasmata 1 ortholog isoform X1
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KO |
K28108 | shortage in chiasmata 1 |
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Organism |
cclu Coregonus clupeaformis (lake whitefish)
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Brite |
KEGG Orthology (KO) [BR:cclu00001]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:cclu03036]
121551366
Chromosome and associated proteins [BR:cclu03036]
Eukaryotic type
Meiosis-specific proteins
Others
121551366
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
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Position |
18:complement(18846400..18871390)
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AA seq |
1563 aa
MSEDGCSFSSHIFSAVKYRALDYSSEASTSLKLTMNWFALPMPYHLGSSDLYPHTGNPPE
VTYRKPWSRGNVISNCKLFVSGSVLDDLGIKGQPTYSLEKLNVSLNQVRVDLLEVIPSSN
PNSQLDLDRDEAAWLLREARKDKGHFVCNESFSKSTGEKMSPRHLHDDLVMPEEVLFVDH
LPQFRKHLPSLKAKLSRLRNLPVSDPLFSSTGGILSEEAIFRHSAAYEVPLDAETESSKT
CSNTDEDFSNESLLNEESLMLPVEMDTCTLKMEDCIPFSNIHKLLNVVPELIEDQTSCLD
MLTKATPSDALESVDISQFEVPRLPVDDSHCEINEILLDLKSSDHLVLPTQMEMDLPLTP
SPKPSLTQLCLASSQLPAEQISPLYRYYLVSEKDQEEMEQALWRAEKHPDLVLGFLLAEP
QKSESVVQFQPLTKALKLLGIGRDNSVRLDEGMELSLLGTSSPGLTGMNGNVSSDFTESM
MISEQPHLMETLSSKIEDFTLLSPCQMDNILSESVDDSKLSGPPSEIKVKSILKNATPMV
VPYHQESERAGNTVVSAKAVATSQEKERTGNVALTAQASISSKEKERSGNVVFSTQAVST
SREKEIAGSMAISAAQATTTTYLEKFDHAVRPQKKEEGLPDQRANVSKLPTPRPGVRDSH
MSLPVAKSQKDLDPLSTFMMLRSQQITYVSVSPQNHTSTPVPQVEQQTPQPPTTEMRPGL
DVKPVAYAVTGNDIRAPEAIIQPVPEDRHNSNVIHVQATESQFWAYRELQAFVLPCLSRA
RELGLTNSACGDFSTLYPDHTRFLLKQQEKELSIRQGQDPEALYDHVALIHVLVTVKDLL
FKCDLSTAVEYLSKATEACAGQNLDRLVRKLEIVLYLSQKKQEHNPKILALQEQLTTWVQ
SKSNGVQNSNVLVIITVDLDCARAMLIKGLSQVTGEAVAAVCPEESRSKLEGAKVLDSLQ
HSCCVVVCSQHMGADFPWHCFSLVVEYGHTEHSPWAAVCTERNITHITFQTRISNSSVSD
PESWSLEQSVPFVLFVTEGLLSCPLLLQILESTYNMTVLERSHSQSLQMLGGTHHYAVIT
VDESTAVIIQEQEELCQERACESLVIRLTALSLQYSCCWLILHCQQDSGLTSEGFNNLVL
VYSSLVLFGLKTEGLDVKVLIVSEVVDIAKWICQIAFHTLLSSERDPSSYLDREWLSVMP
SEEERCLLGFPCVNPLVAQLMLSRGSSLHWLLGASLSQLQELLPEVPHKVIKLFSDTTSL
YKLTAATSSPESHTDLTHQKDHNSPTEPRATSRDNQYTHTDPHTSRNPHSDCNPHPHCAP
HTHHDPEPLNPNCSLAGSPSAESVAGNFYEESSVMTKEDSADIQVDLSPSFGFQQAPFQH
TWSHNPWEVEEESDEVKFVGWNRGRGAEEWTGSAPLHQETCGSPRDYVPENQFQTGLSSS
FSYSTNTQRPAYSDNQMYSFSTVGYSDQQHYPDVSHYPSLASHRGALSWGGSSSGSPYST
AQWRRDMSVSPDYGTSYRTGMERKRRAEGPEMVGTVVTPLKRGKLSYEKVPGRSDGQTRL
RFF |
NT seq |
4692 nt +upstreamnt +downstreamnt
atgtctgaagatgggtgctctttctcaagtcatattttctcagcagtcaaatatagagct
ctcgactattcttctgaggcttctactagtctcaagttgaccatgaactggtttgccctg
ccgatgccctaccatctgggcagcagtgacctctaccctcacactggtaacccccctgag
gtcacctacaggaaaccatggagcagaggaaatgtgatttccaactgcaaactgtttgtc
agtggatctgtactagatgacttggggattaaaggacaaccaacatactctcttgaaaag
ctgaatgttagtctgaaccaggtgagagtggatcttctggaggtgataccgagctccaac
cccaactctcagcttgatttagatagagatgaagcagcgtggctcctgagagaggctagg
aaggacaagggacactttgtctgtaatgaatcctttagcaagagcacaggagagaaaatg
agcccaagacatctgcatgatgatcttgtcatgccggaggaggttctgtttgttgatcac
ttgccacagttcaggaaacatctgccctccttgaaagccaagttatccagactgaggaac
ctgcctgtgtcagaccctcttttcagctccactggaggcatcctgtcagaggaagctata
ttcaggcactctgcggcctatgaggtaccccttgatgcagagacggaaagctccaaaacc
tgttcaaacactgacgaggactttagcaacgagtcgttgttgaatgaagagtctctgatg
ttacctgttgaaatggacacctgcacactcaagatggaagattgcatccctttttcaaat
attcataaactattgaatgttgtaccagaattgatagaggaccaaacctcttgcctggat
atgctcactaaagcaactccctcagatgcactggagtcagtggacatatcccagtttgaa
gtgccacggctgccagtcgatgactctcactgtgagattaatgaaatcctgctggatctc
aagtcatcagatcacttggtgttgcctactcagatggagatggacctacccctcaccccc
tctcccaagcccagcctgacccagctctgtctggcctcctcccaactcccagctgagcag
atctctccactctacagatattatttagtgtctgagaaagatcaggaggagatggaacag
gcactttggagggcagagaagcaccctgacttggtgcttggctttcttttggcagagccc
cagaagtcggaatctgttgtgcagttccagcctttgaccaaagccttgaagttattaggg
attggtcgggacaactctgtgagactcgatgaaggaatggaactatcacttctgggaacc
agctcaccaggactgacagggatgaatgggaatgtttcctctgacttcactgagagtatg
atgatctcggagcaaccccaccttatggagacattgagcagtaagatagaggacttcaca
ctactatcaccctgccagatggacaatatactgagtgaatctgtagatgactctaagttg
tcaggcccaccaagtgagataaaagtcaagtctatcctgaagaatgcaacacccatggtt
gtgccatatcatcaggagagcgagagagctgggaatacagtcgtttcagcaaaggctgtt
gccacttcccaggagaaagagagaactgggaatgtggccctcacagcccaagcatctatt
tcttccaaagagaaagagagatctgggaatgtggtcttttcaacgcaggctgtttccact
tctcgtgagaaagagatagctgggagtatggccatctcagcagcacaggctaccaccact
acttacctggagaaatttgaccatgcagttagacctcagaagaaggaggagggtttacct
gaccagagagctaatgtatccaaactcccaacccccagacccggtgtgagagacagtcac
atgagtctcccagtggctaaatctcagaaggacttagaccctctgtccactttcatgatg
ttaaggtcccaacagataacctacgtctctgtgtcgcctcagaaccatacaagcacccca
gtgccacaggtggagcagcagacaccacagccacctacgacagaaatgaggcctggctta
gatgtcaagcctgttgcctatgcagtcacaggaaatgacatcagagcccctgaggcaatc
attcagcctgtccccgaggacagacataacagcaatgtcatacatgtccaagccacagag
agtcagttctgggcgtacagagagctgcaggcatttgtcctgccctgcctgtccagagcc
agggagctggggctgactaactcagcctgtggagacttcagcaccctgtacccggaccac
acacgcttcctactgaaacagcaggagaaggagctcagcattcgacagggccaggaccca
gaggctctgtatgaccatgtggcactgatacatgtccttgtgacagtgaaggacctgctc
ttcaagtgtgacctcagcactgcagtggagtacctgtccaaggccacagaggcctgcgcg
gggcagaatctggacaggttggtgagaaagctggagattgtgctgtacctcagtcagaaa
aaacaagagcacaaccctaagatactggcactgcaggaacagctgaccacatgggtgcag
agcaagagcaatggggtccaaaactccaacgttctggtgataataacagtggacttggac
tgtgccagagctatgctcattaaaggcctgagccaagtcacaggtgaggctgtagctgca
gtatgtcctgaggaaagtagaagtaagctggagggtgcgaaagtgctagatagcctgcag
catagctgctgtgtggtggtgtgtagtcagcacatgggagcagacttcccctggcactgt
ttctccctggtggtggagtacggccacacagaacactccccctgggctgctgtctgcaca
gagaggaacatcacacacattaccttccagaccagaatatctaattcctctgttagtgac
cctgagtcttggtccctggagcagagtgtcccctttgtgttgtttgtgactgaggggctg
ctcagctgtcctctgttgcttcagatactggagtcaacgtataatatgactgtattggag
aggagccactctcagtccttacagatgcttggagggactcaccactatgctgtgattaca
gtagacgagagcactgcagtcatcattcaagagcaggaggagctgtgtcaggagcgggcc
tgtgagagtctagtgattagactgactgctctgtctctgcagtacagctgctgctggctc
atccttcactgccagcaggactcagggttgaccagtgagggcttcaacaacctggtgttg
gtctactcctctctggtgctgtttggcctcaagactgagggcctggatgtcaaggtgcta
attgtatcagaagttgtggacattgccaaatggatctgccagatagccttccatacactg
ctgtccagtgagagagatccttccagctacctggacagagaatggctttctgtgatgccc
tcagaggaggagaggtgcctgctagggttcccctgtgtgaaccctctggtggcccagctg
atgttgagtaggggctcctctctccactggctcctgggggcctccctctcccagctgcag
gagctgctccctgaggtccctcacaaagtcatcaagctcttcagtgacacaacatctctg
tacaagctgactgcagctacctcctctccagagtctcacactgacttgacgcatcagaaa
gaccacaatagccccactgagcctagggccacaagcagagacaaccaatacacccacacc
gaccctcatacaagccgcaacccacactccgactgcaaccctcacccacactgcgctcca
cacacacaccacgacccagaaccattaaaccccaactgctcccttgctggctcccccagt
gctgagagtgtagctgggaacttctatgaagaaagctctgtcatgaccaaggaggacagt
gcagacatccaggtggacttgagtccctccttcggcttccagcaggccccttttcagcac
acctggagccacaacccatgggaggttgaggaggagagtgatgaggtgaagtttgtaggc
tggaatagaggaagaggagcagaggagtggacaggcagtgcacccctacaccaggagacc
tgtggctcccccagagactacgtgccagaaaatcaatttcagacaggcctctcatcctca
ttcagctacagcacaaacacacagagaccagcgtactccgacaaccagatgtactcgttc
tctacagtagggtacagtgaccagcagcactaccctgatgtcagccactaccccagcctg
gcctcgcatagaggagctctgtcatgggggggcagtagcagtggcagcccctacagcact
gcccagtggaggagagacatgagtgtgtcacctgactatgggaccagttacagaacgggg
atggagaggaagaggagagcagaaggcccagagatggttggcacagttgtaacgccattg
aagaggggaaagctcagttatgagaaggtgccaggccgaagtgatggacagacaagacta
aggtttttctaa |