Coregonus clupeaformis (lake whitefish): 121551414
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Entry
121551414 CDS
T08357
Name
(RefSeq) retinoic acid-induced protein 1
KO
K19749
retinoic acid-induced protein 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121551414
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
121551414
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-HC5HC2H_2
zf-HC5HC2H
Motif
Other DBs
NCBI-GeneID:
121551414
NCBI-ProteinID:
XP_041719988
LinkDB
All DBs
Position
Unknown
AA seq
2281 aa
AA seq
DB search
MQSFSRERSGFHGNQPCYQQEHHELSRLESYRQHPHHGQTRQVYEAHALATATGMPPAGP
GPGPGSGSGPIPGPKDCYSQQVYPGYPQGNGGGVGGGGGSTPHDKKAYSGGSQVPPPPPQ
HMQAGGYSNHMGPGGYPAQYMSEGHLQQSKWDDPAQLAQYEQEMVGRMEPGPPGSSQYLD
QNMLAHSQSQCHQPHQASAPVYTSPHHQPHPPNPGQSPLMYPQSHLHYPQHPPSPSPSSS
SYMEKCSPMPHCYKGYSMPPSSQYARQMGSHSSLKQGGYRPPPQNSYSYQQTPSRGGYES
QPPLQGMPTSQEAHPKYQHFSQSQQNYCLSELSVRSPEQYYQTCSPASSHSPARSVGRSP
SYSSTPSPLMTNPESFQYSQPPMTPGAASSSSSSSVGLQDQGLLMPPRSHPSPSPNVAHP
TPQHSYTQGVSMKERFSEKLLANPSLWSLNALTSQVENISNNVQQLLLSEAMVANKKGGK
RNSSNSTGSSGGGSSKKEEEYKGVPGGPEGQHGGGPVQDPYSTNQHQLVPMEMQEGGYSS
SSDEQLERGYYYCGQGRSPAQAPNNTHLGLDTASSCSMTSPDDMSTRSGDSVSGLQSVAS
RDNLTPDPRSQGGHDPPQTPMKSVGDERSPVSVTVPSPMKQESQSPPDIQRLGVPLKENF
EELAWTEKMADYEEDGMKKTPDSERDCRGSDDVTDTSEKQEKWPEDEKGPALYSKINKAV
TKGKSYCCDENMYHEIQNKYDRGKGDSADKSPSLSDSSHKGDLGQEMKSEAFKSESPTDS
ESSVKTSPFISRGDLDQDQYLTEKEDSSENISPTPRGEALDERLSASEKRESREEEEEEE
DEEGEEERQQDSISPPLSAEEREGEESESLPSTEEVLNNSTSPQKEHSVELCSRTEGQSL
AEPQPYRNTEPAETETQAAQPDPTAAAAESPEMGSAICDTPPQSHSAMMVFSALSEIATP
PAPAHTRDHIDRSDSNVLEPDSPQLPGKSILHSAPSWANTPPSPKKGDEDMEPGISCPSA
VTPSANPEPVAPSAHPQAFGRKHGRGRRRLMHSGVEFRRQLSVEREGESASSPPQKPCMP
SSKSPLFSDQIDMAAHQDIIMTSETPKLLVEGSRSRMCTRSFNTQDTTPKDPQPPERRKP
GRKPGSKPGPKPGPKSGLKPGPKPGLKPGPKPGPKPSLKPGPKLGMKPGSKPGPKPGLKP
GPKPGPKPGLKPGPKPGPKPGPKPGPKPTEGAPRGRPRGTGSKLKLAQQEGPIQPITGGP
GRGQKSLSINSQQGDGNQEVKAPGKDGKNMVLRSRKPPQDKLPKEKEKEQSEGILTQTLT
GITKPNAVLENEERTSIEQALPVFPNQTDTSVTDTSVTDTSKTDTSVTDISKIDTSVTDT
SVKDTSVTDTSKIDTSVIDTSKIDTSVTDTSVTDTSVTDTSVTDTSKTDTSVTDTSVTDT
SVTDTSVTDTSKTDTSVTDTSVTDTSKTDTSIPVAPPEKPKEPTVAVPPVTAPVPPLKRK
PSPLPLEPPVKKKRGPKPKPKPQPQQPQPETPQSDQSNQSNQSNQSNQANQSNQPPLVKS
KEMGVRGPKRRLKRGRHLKASLITVLTKDNPPPTMTDCDVVSEMPSVPSQCPTKTKYLPP
RKGRGLKYEAMVQKINMGTGSKKHLPTPQPESTEAIVEEVTSKPVSLAISEESEAPVAVV
SAPEVTREEVAGDEWNSTGVQNTEQEGGVQQNTGEGVQPESLPAGVPDAAAASDANKPTR
TKRRKWAMVESTDATVVAMETGSLIINTPRLAKQRAIKNNHEMHLKQRRKRKGGQPPSEG
PVADEKVGATTGEQQTETQTPTDTTLTTMPDLPAGPGEITDSPQVIATEMIQPPPSKRGR
KPSSSWSKKRGRGRAPGEQQSSKPLKVHKKPGPKKGIKDAIEVIEAVVKAAGREARLKKK
TSKKESPAVSEEKQPEPSLKQVLSKTPKSGIKHSFCPYVRIDSSRDFASLCTIVNRRNEE
LKMVFQKPRKKSPDKIKNPVTVAKAIPSSSALLQGPLVNKNLIDRCLTCCLCGKPANYRE
LGDLCGPYYPEDSIPRKILSARHIEPPRENQEKTTSSNSSIEEPSSSTPKSEGDPSSEKE
GIKKGDMETVTKEGSSSTSGGGHHHQPHPHHWRPRRAERAPAEGGSTHRPTLRDRFRRMQ
QLQEERRAAEATASGQEGGSGGGGLLQRLQGEAEAKEHWAHENCAIWTNGVIMVAGRLYG
LTEAVHTSTETSCSKCQRVGASISCCWKGCPHKYHYICAKEIGCMFQEDNFSLKCPKHEA
L
NT seq
6846 nt
NT seq
+upstream
nt +downstream
nt
atgcagtccttcagcagagagaggagcggtttccacggcaaccagccctgctaccagcag
gagcaccatgaattatcacgcctggagagctaccgacagcacccccaccatggacagacc
agacaggtctacgaggcacacgccttggccaccgctacagggatgcccccagcgggacca
gggcccggacctggatctggaagtggacccattcctggacctaaggactgttacagccag
caggtataccctggatacccccaaggcaatggaggtggtgtgggtggtggaggaggttcg
acgcctcatgataagaaggcttacagtggggggagccaagtgcctcctccccctccccag
catatgcaggcggggggctacagcaatcacatgggcccggggggatacccggcccagtat
atgagcgagggccacctccagcagtctaagtgggacgacccagctcagctagctcagtac
gagcaggagatggtaggcaggatggagccgggtccccctgggtcatcccagtatctggac
cagaacatgctggctcactcccagagccagtgtcaccagccccaccaggcctctgctcca
gtctacaccagcccacaccaccaaccccatcccccaaacccaggccagtccccattgatg
tacccccagagccacctccactacccccagcaccccccatccccctcgccctcctcctcc
tcctacatggagaagtgcagccccatgccccactgctacaagggatatagtatgccaccc
agctcccagtacgctaggcagatgggcagccacagcagtctgaagcaggggggataccga
ccgccaccccagaacagttacagctaccaacagactccctccaggggtggctacgagtcc
cagcccccactacaaggtatgcccacttcccaggaggcccaccctaaataccaacatttc
agccagtcccagcagaactactgtctgtccgagctgtccgtcagatcccctgagcagtac
taccagacatgtagtcccgcctccagccactcccctgcacgctccgtgggacgctcaccc
tcctacagctccaccccttcccctctgatgaccaatccagagagcttccagtacagccag
ccaccaatgaccccaggggcggcttcttcttcctcctcttcctcagtgggtctgcaggac
cagggcttgctgatgccgccgcgctcccacccgtccccgtcccccaacgtggcccaccca
accccgcagcacagctacacgcagggggtctccatgaaggagcgcttctctgagaagctg
cttgccaatcccagcctgtggagcctgaatgccctcacctctcaggtggagaacatctcc
aacaacgtgcagcagctgttgctatccgaggccatggtcgccaacaaaaaggggggcaag
cgcaacagcagcaatagcactgggagcagtggaggcggctcctccaagaaggaagaggag
tacaagggagtgccaggaggccccgagggtcagcacggtgggggccccgtgcaggacccc
tacagcaccaaccagcaccagctcgtccccatggagatgcaggaggggggatactccagt
agttctgacgagcagctggagagggggtactactactgtggccagggcaggagcccagct
caggcccccaacaacacacacctgggcctggacacggcctcatcctgctccatgacctct
ccggacgacatgtccacccggtctggtgactctgtgtccggcctgcagagcgtggcttcc
agggacaacctgacccctgaccccaggtcacagggtggtcacgaccccccacaaaccccc
atgaagagcgtgggggatgagaggtcccccgtgagtgtgacggtccccagccccatgaag
caggagagccagtcccctccagatatccaacgtctcggcgtgccactgaaggagaacttt
gaggagttggcctggacggagaaaatggcagactacgaggaagatggcatgaaaaagact
cccgacagcgagcgtgactgcagaggcagcgatgatgtcacagacacctccgagaagcag
gagaaatggccggaggacgagaaaggcccagctctgtatagcaagatcaacaaagcagtt
accaagggaaagagctactgctgcgacgagaacatgtaccatgagatacaaaacaaatat
gaccgaggcaaaggggactcggcggataagtccccaagcctctcagactccagccacaag
ggagacctgggccaggagatgaaatcggaggccttcaaatccgaatctcccaccgactct
gagagctcagtgaagacatcaccctttatttccaggggtgaccttgaccaagatcaatat
ttaacagagaaggaagacagctcggagaacatatcccctaccccccggggcgaggctttg
gacgagaggctctcggcctcagagaagagagagagcagagaagaagaagaggaggaggag
gatgaggagggagaggaggagaggcagcaggactctatatctcctcctctgtctgctgag
gagagagagggagaagagagtgagagcctgccatcgactgaggaggtcctcaacaatagt
acgagcccacagaaggagcattctgtagagctgtgcagcagaacagaaggccagagcctg
gctgagcctcagccttaccgtaacacagagcctgcagagacagaaacccaagcagcacaa
ccagacccaacagcagcagcagcagaatccccagaaatggggtcagccatttgtgacact
ccaccccagtctcactcggccatgatggttttctcagctctcagtgagatagcaacacct
ccagctccggctcacaccagggaccatatcgatcgcagcgattccaacgtgctggagcct
gactcccctcagctgccagggaagtcgatactgcactcagctccctcctgggccaacacc
ccaccctcgccaaagaaaggtgatgaggacatggagccgggcatcagctgcccaagcgct
gtgaccccctcagccaacccggaacccgtggccccatctgcacacccgcaggctttcggc
cggaagcacggccgaggcaggaggagactgatgcactcaggtgtggaattcaggagacag
ctgagtgtggagagagagggggagagtgcctcttcacccccccagaaaccctgcatgccc
tccagcaagagtcctctgttctccgatcagatagacatggccgctcaccaggacataatc
atgacgagcgagacacccaaactgctggttgagggctcccgctccagaatgtgcactcgc
tcgttcaacacgcaggacacaacccctaaggatccccagccccctgagagacggaaacca
gggcggaaaccaggttcgaaaccaggcccaaaaccgggcccgaagtcagggttaaaacca
gggcctaaaccaggactaaaaccaggaccaaaaccaggtccaaaaccgagtctaaaacca
ggaccaaaactaggtatgaagcccggttcgaagcccggcccaaaaccaggtttaaaaccg
gggcctaaaccaggcccaaaaccaggtctgaaaccagggcctaaaccaggtccaaaacca
ggaccaaaaccaggtccaaaaccaactgaaggagcaccccggggtcgtcccaggggcaca
ggctctaagttgaagttggcacaacaggaaggtcccattcaacccatcacagggggtcca
ggaagaggccagaagagcttgagcatcaacagtcagcaaggtgatgggaaccaggaagtg
aaagctccaggcaaggatggaaagaacatggtcctgagatccagaaagcccccccaggat
aagcttccaaaggagaaagagaaggagcaatctgagggaatcctaactcaaaccctgaca
ggtataacaaagcccaatgcagtgttagaaaatgaggaacgtacgagcatagagcaagcc
ctccctgtctttcctaaccagacagacaccagtgtaacagacaccagtgtaacagacacc
agtaaaaccgacaccagtgtaacagacatcagtaaaatagacaccagtgtgacagacacc
agtgtaaaagacaccagtgtaacagacaccagtaaaatagacaccagtgtaatagacacc
agtaaaatagacaccagtgtaacagacaccagtgtaacagacaccagtgtaacagacacc
agtgtaaccgacaccagtaaaacagacaccagtgtaacagacaccagtgtaacagacacc
agtgtaacagacaccagtgtaaccgacaccagtaaaacagacaccagtgtaacagacacc
agtgtaaccgacaccagtaaaacagacaccagtatacctgtcgctccacctgagaaacct
aaagaaccgactgtagctgtacctcctgtaactgcacctgtacctccactcaaaagaaaa
cccagtcctctgcctctagaacctccggtgaagaaaaagcgaggtccaaaaccaaaacca
aaaccacaaccacaacagccacagcctgaaactccccagtctgaccagtccaaccagtcc
aaccagtccaaccagtccaaccaggccaaccagtccaaccagcctccattagtcaaatcc
aaggagatgggtgtccgaggccccaagaggaggctaaagcgaggcagacacctcaaggcc
tctctgatcactgtgctgaccaaagataaccctcctcccacgatgactgactgtgatgtg
gttagtgaaatgcccagtgtcccttctcagtgtcccactaaaaccaagtacctccccccg
cgcaaaggcaggggtctgaaatacgaggcgatggttcagaaaataaacatgggcactggt
tcgaagaaacacctgccaacaccacagcccgagagcacagaggcaatagtggaggaagtg
acgtcaaagcctgtgtcgctggccatctcggaggagagcgaggccccagtggcggtggtg
agcgcccctgaggtgacacgggaggaggtagcaggggatgagtggaactccacgggggtc
cagaacacagaacaggagggaggggtgcagcagaacaccggggagggggtgcagccggag
tcactcccagcgggggtgccagacgctgcagcggcgagcgatgccaacaaacccaccagg
accaagaggaggaaatgggccatggtggagagcacggacgccacggtggtcgccatggag
acgggaagcctgatcatcaacacgccgcggctggccaagcagagggccatcaagaacaac
cacgagatgcacctgaaacagaggaggaagaggaaaggaggacagcctccctcagagggg
cctgtggctgacgagaaggtaggggcaacaacaggagaacaacagacagagacacagaca
cccactgacacaacattaacaacaatgcccgatctaccagccggcccaggtgagatcaca
gacagcccgcaggtgatcgccacagaaatgatccagccgcctccctccaaacgagggagg
aagccctcttcatcctggtccaaaaagagagggagaggcagagccccaggtgaacagcag
agcagcaaacctctgaaggtgcacaaaaaacctggtcctaaaaagggaatcaaagacgcc
attgaagtgattgaagcagtggtgaaggctgcagggagggaggccagactcaagaaaaag
acatcgaaaaaggagagccctgcggtgtcggaggaaaagcagccggagccctctctcaaa
caggtactgagcaaaacccccaaaagcggaatcaaacattccttctgtccatatgtgcgt
atcgacagctccagagacttcgcctctctctgtaccatcgtaaacaggcgcaatgaagag
ctgaagatggtgtttcagaagccccggaaaaagagcccggacaaaattaaaaacccagtc
acggttgccaaggcgatacccagctcctcagctttgctccaggggcccttggttaacaaa
aacttaattgacaggtgtctaacgtgttgcctgtgtggaaagccggcaaattaccgtgag
ctgggggatttgtgtgggccctactacccagaggatagcatcccgcgcaaaatcctgtca
gcaagacatatagaacccccgagggaaaaccaagagaaaacaacaagctccaacagtagc
atcgaggaaccaagcagcagcaccccaaaaagcgaaggagaccccagctccgaaaaggaa
ggcattaaaaagggggatatggagacagtcacaaaggagggcagtagtagtactagtggt
gggggtcaccatcatcagccccacccccaccactggcgccccaggagggcagagagggca
cctgcggagggcggaagcacgcaccggcccaccctacgggataggttcaggaggatgcag
cagctccaggaggagaggagggctgcggaggccacagctagtggtcaggaggggggcagt
ggaggaggaggcctgctccagagattgcagggggaggctgaggctaaggaacactgggcc
catgagaactgtgctatctggaccaatggggtcatcatggtggccgggaggctgtacggc
ctgacagaggctgttcacacttccacagaaacgagctgctccaagtgccagagagtgggt
gcgtccatcagctgctgctggaaaggctgccctcacaaataccactacatctgcgccaag
gagataggctgcatgttccaagaggacaacttttcactgaaatgtccgaaacacgaggct
ttgtaa
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integrated database retrieval system