Coregonus clupeaformis (lake whitefish): 121551426
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Entry
121551426 CDS
T08357
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear pore complex protein Nup85-like
KO
K14304
nuclear pore complex protein Nup85
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121551426
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121551426
03036 Chromosome and associated proteins [BR:
cclu03036
]
121551426
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121551426
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
121551426
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleopor_Nup85
4HB_MCP_1
Motif
Other DBs
NCBI-GeneID:
121551426
NCBI-ProteinID:
XP_041720003
LinkDB
All DBs
Position
Unknown
AA seq
651 aa
AA seq
DB search
MEEVDVEPTTTPIPGIDSNQKHLGFVWGPGDILVYETIYKASGGSAGGCPFVHEVRKDED
IYSPILRKLFNESHHIFVGLQRIREDLPSKNKKPQFVSISKNYRSVIRACMEELQQVAVS
TQDAALATQYGNQVSILLAVELIWNLCEVLFIDAAPAGSLLLHLLDWVRLHKADVDEKAX
EVLASESPAEHQAYWDVVISYVLQGRMDEARQVLVKQAALQPAARAMFKLLDNLLKKMPI
FNPGETQTLTEFDVKWRHWREEVDRCLQDQSFASNPHLEVICKILVGDEDVLLEHKELLS
TWYHFLVTRLLFSHPTVKPTELHYYAQSSMHMFLDTRSVPEPLDSILLAAFEFDIHQVIK
DCSIALNNWWFVGHLTDLLDHCKLLQSHNLHFGSNLREFLLLEYASGLFTHHSLWQLAVD
YFDHCPEFGRVYLELQIERVPLDTERKALKVIRICEQRQMPEQVRSICKIMAKKALRNNR
LGSALSWSIRAKDAAFATLISERFLQDYCAKGTFSDLDLIDNLGPAMLLSDRLTFLGKYR
EFHRLYGEKRFSDAAKLLLSLMTAKIAPRSFWMTLLTDALPLLEQKEVIFSADQTHELMF
CLEELTSWKSVPNPDRPMQDEDIETTKIELLRLALARNLAMAIVKEGTVEV
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggtagatgtggagccgacaactactcctatccctgggatcgacagcaaccaa
aaacacttgggatttgtgtggggtcctggagatatcctggtttatgagaccatttacaaa
gcatcaggtggatctgcagggggttgtcccttcgtccatgaggtcaggaaagatgaggac
atctattcccctattttgcgtaaactcttcaatgagtcccatcacatctttgttggtctg
cagaggatcagagaggatctgcccagcaagaacaagaaaccccagttcgtcagtattagc
aagaactacaggtctgtgattcgagcatgcatggaggaactccagcaagtcgcagtttct
acacaagatgcagcgttggctacacagtatggaaatcaggtgtcaatcctgctggcagta
gagctgatctggaacctttgtgaagtgttgttcatcgatgcagctccagctggctccctg
ctgctccacctgctcgactgggtgaggctgcacaaggctgacgtggatgagaaggccnng
gaggtgcttgcgagtgagagccccgcagagcaccaggcctactgggacgtggtgatcagc
tacgtgctgcagggccggatggacgaggccaggcaggtcctggtgaaacaggcagctctg
cagcctgcagccagggccatgttcaaactgctggacaacctgctcaagaagatgcccatc
ttcaatcctggtgagactcagaccctgacagagtttgatgtaaagtggagacactggcgc
gaggaggtagaccgctgtctccaggaccagtccttcgccagcaacccccacctggaggtt
atctgtaagatcctggttggtgatgaggatgttctcctggagcacaaggagctgctgagt
acctggtatcacttcctggtcaccagactgctgttctcccaccccactgtcaagcccaca
gagctgcactactacgcacagtcgagcatgcacatgttcctggacacgaggagtgtccca
gagcccctggacagcatcctgctggcagcctttgagtttgacatccaccaggtcatcaag
gactgcagcattgctctcaacaactggtggtttgtggggcatctgactgacctgctggac
cactgtaaactgctccagtctcacaacctacattttggctccaacctgagggagtttcta
ctgctggaatacgcctcaggactgttcacccatcacagcctgtggcagctggctgtggac
tactttgaccactgtccagagtttggccgtgtgtacctggagctacagatagagcgtgtt
cctctggacacggagcgcaaggccctgaaggtgatcaggatctgtgagcagaggcagatg
cctgaacaagtgaggagcatctgtaagatcatggccaagaaggccctgaggaacaacaga
ctgggctcagctctctcctggagcatcagagccaaagatgccgccttcgccaccctcata
tcagagaggtttctccaggactactgcgccaaagggaccttctctgatctggacctgatt
gacaacctgggcccagccatgctgctcagtgacaggcttacttttctagggaagtaccgt
gagttccaccgtctgtatggcgagaagcgtttctcggacgccgccaagctcctcctctct
ctgatgacggccaagatcgccccccgctccttctggatgactctgctgaccgacgccctg
cccctgctggagcagaaagaggtgattttctctgctgatcaaactcatgagctgatgttc
tgtctagaggagctgacctcatggaagagtgttcccaacccagacagacccatgcaggat
gaggacatcgagacgaccaagattgagctcctgcggctagcgctagcccgtaacctggcc
atggccatagtgaaggaggggacagtggaagtttga
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