Coregonus clupeaformis (lake whitefish): 121551703
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Entry
121551703 CDS
T08357
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121551703
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cclu03041
]
121551703
Spliceosome [BR:
cclu03041
]
Complex A
U1 snRNP components
U1 related factors
121551703
Complex B
121551703
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
GA_3
Motif
Other DBs
NCBI-GeneID:
121551703
NCBI-ProteinID:
XP_041720362
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Position
4:complement(10692286..10727122)
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AA seq
896 aa
AA seq
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MSSDGNNGQSQAPPFAGVPPSGMPPPFMGPPGMPPHYPPMGIPPMGQRPPNMAPMPPGMM
PPGMMPPMGGPPMGQMPGMMPPMMPGMMMPPHMPAAAMQPTGPPGVDTTVTAVPGIVGTT
NGTPQDDQPKKKSLWTEHKSLDGKTYYYNTETKQSSWEKPDDLKSPAEQMLSKCPWKEYK
SDNGKAYYYNSQTKESRWTKPKELEDLEAMIKAEENGTSEVGAPCTVIAPTLQLDSAAVM
ATMMMEMPVMMPATTVSEEQMSQVPMHVAEVSADTPVNSTEDAAVMEASASNDASKDERP
ELVKKTYKWNTKEEAKQAFKELLKEKGVSSNASWEQAMKMIINDPRYSALPKLSEKKQAF
NAYKVQTEKEEKEEARLKYKESKETYQRFLENHEKMTSTTRYKKAEQMFAELDVWSTVPE
RDRLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNP
TFAEDEELQNMDKEDALICFEEHIRALEKEEEDEKQKTLLRERRRQRKNRESFQKFLDEL
HDHGQLHSMSAWMEMYPAVSSDIRFANMLGQPVYGVYSAGSTPLDLFKFYVEDLKARYHD
EKRIIKDILKDKSFLVEVNTSFEDFGSVISSDKRAMTLDAGNIKLAFNSLLEKAEARERE
REKEEARKMKRKEATFKSMLKQATPALEPEATWEGVRERFLKESAFEDVTLESERKRIFK
DFMHVLEHECQHHHAKTKKHSKKSKKHHRKRSRSRSRSRSGSESEGEDDYHTKKKKHSQS
KSPSERSSSGESERSYKKSKKHKKKGKKRRHKSQSPESEGERKEKGRERDCKREKDQEKE
KENDKSRGKSRSDSKQKSPKRKSTKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagatggtaataatggccagagccaagcacctccttttgctggtgtcccaccc
tcaggcatgccaccgccttttatgggaccacctggaatgccgcctcattacccaccaatg
ggaattccacccatgggacagaggcctcccaacatggctcccatgccgcctggcatgatg
ccacctggcatgatgccacctatgggagggccaccgatgggacagatgccaggcatgatg
ccacctatgatgcccgggatgatgatgccccctcacatgccagctgcggcgatgcagcca
acaggaccgcctggagtggacacaactgtcactgctgtgccaggaatagttggtaccaca
aatggcacgccacaggatgaccaaccgaagaagaagtctctgtggacagaacacaagtct
ctggatgggaagacctactactacaacacagagaccaaacagtcttcttgggagaagcct
gacgacctgaaatctcctgcagaacaaatgctgtctaaatgcccatggaaggagtataaa
tcggacaatggcaaagcgtactactacaactcccagactaaggagtcccggtggaccaaa
cccaaagagcttgaagatctggaagccatgataaaagcagaggagaatgggacatcggag
gtaggcgctccttgcactgttatcgcccccacccttcagctcgacagcgctgctgtcatg
gcgaccatgatgatggaaatgccggtcatgatgccggctacaacagtttcggaggaacag
atgtcccaggtgcccatgcatgtagctgaggtcagcgctgacacgcctgtcaactccaca
gaagacgcggccgtcatggaggcctcagccagtaatgacgcttcaaaggacgagaggcca
gagctggtgaagaaaacgtacaagtggaacacgaaagaagaggccaagcaggcctttaaa
gagctcctgaaggagaagggcgtttcatccaatgcgtcttgggaacaagccatgaaaatg
atcatcaatgacccacgctacagtgccctgcccaaattaagtgaaaaaaagcaggccttc
aatgcttacaaggtgcagacagagaaagaggagaaggaggaggccaggctcaaatacaag
gagtccaaggaaacgtatcagagatttttggaaaatcacgagaaaatgacatctaccacc
agatacaagaaagcagagcagatgtttgcagagttggacgtgtggagcaccgtcccagag
agggacagactggagatctatgaagatgtcctattctacctggccaagaaggagaaggag
caagccaagcagctgaggaagaggaactgggaggcgctgaagaacatccttgacaacatg
gccaacgtgacctaccgcaccacctggtccgaggctcagcagtacctactggacaacccc
accttcgcagaggacgaagagctccagaacatggacaaggaggacgctctgatctgtttc
gaggagcacatccgagcgctggagaaggaggaagaggacgagaagcagaagactctgctg
agggagaggaggagacagcgcaagaacagagagtccttccagaaattcctggatgagctc
catgaccatggtcagctccactccatgtctgcctggatggagatgtaccccgccgtcagc
tcagacatccgcttcgccaacatgctgggccagccagtttatggtgtctattctgcaggc
tccactcccctcgatctgttcaagttctatgtggaagacctgaaggctcgctaccatgac
gagaagaggatcattaaggatatcctgaaggacaaaagcttcttggtggaagtcaacact
agctttgaagactttggctctgtgatcagctcagacaagagagccatgacgctggacgca
ggcaacatcaagctggccttcaacagtttgctggagaaggcagaggctcgggagagggag
cgggagaaggaggaggccaggaagatgaagaggaaagaggctacctttaagagcatgttg
aagcaggccaccccggccctggaaccagaggccacctgggagggagtccgagaaaggttc
ctcaaagaatctgcgttcgaagacgtgactctggagtctgagaggaaaaggatattcaaa
gacttcatgcatgttttggagcacgagtgtcagcatcatcacgccaagaccaagaaacat
tccaagaagtccaagaagcatcacaggaagcgctcccgctcccggtctcgatcgcgatcg
ggctcggagtctgaaggtgaagacgattatcacaccaagaagaagaagcactcacagtcc
aagtccccgtccgagcgctcctccagcggcgaatctgagagaagttataagaagtccaag
aagcacaagaagaaggggaagaagaggcgtcacaagtcgcaatctcctgaatccgaaggc
gaacgaaaagagaaaggaagagagagggactgcaagcgtgagaaggaccaggagaaagag
aaagagaatgacaagtcccgggggaagagtcgttctgactccaagcagaagtcacctaaa
aggaaatctaccaaggaggagggtggctgggacacatcaggcagcgagctaagtgaagga
gagctggagaagaggaggaggactctactagaacagctggatgctccttga
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