Coregonus clupeaformis (lake whitefish): 121551825
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Entry
121551825 CDS
T08357
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1I-like
KO
K04856
voltage-dependent calcium channel T type alpha-1I
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04010
MAPK signaling pathway
cclu04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121551825
04020 Calcium signaling pathway
121551825
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121551825
Ion channels [BR:
cclu04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
121551825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
ETRAMP
Motif
Other DBs
NCBI-GeneID:
121551825
NCBI-ProteinID:
XP_045071852
LinkDB
All DBs
Position
Unknown
AA seq
2147 aa
AA seq
DB search
FAVHTWFERISIMVILLNCVTLGMYQPCENIDCTSDRCQILQAFDAFIYIFFALEMVVKM
VALGIFGRRCYLGDTWNRLDFFIVMSGMVEYSLDLQNINLSAIRTVRVLRPLKAINRVPS
MRILVNLLLDTLPMLGNVLLLCFFVFFIFGIIGVQLWAGLLRNRCYLEENFTLSSGLTLP
APYYQPEEDDERPFICSLAQDNGIMSCGDVPARREGGRTCCLDREDAYHRQSLGLSPEPL
VNGSASGVGLCINWNQYYTRCHTGHSNPHKGAINFDNIVYAWIVIFQVITLEGWVEIMYY
VMDAHSFYNFIYFIFLIIIGSFFMINLCLVVIATQFSETKQREHQLMQEQRAQCLSSSTL
ASLHEPGDCYEELFQLVCHMLRKARRRSVALYNQLRGRPLPPPPTRGRGRGRGGGEGGGN
ANGGDRHHPRQPRQSHCPHQSKLDPIHSSQPLGNSIALAVPQNTEDCPQCAAALSLREGA
GAVGDSANGEEEEGAVEETDREENHLEEKAEEGEGVKKKRKRRSCFGHCKDMWDEMRKKL
WGIVESKYFNRGIMIAILINTISMGIEHHNQPEELTNVLEISNIVFTSMFTLEMILKLTA
FGFFAYLRNPYNIFDGIIVIISVCEIIGQSDGGLSVLRTFRLLRVIKLVRFMPALRRQLV
VLMKTMDNVATFCMLLMLFIFIFSILGMHIFGCKFSLKTETGDTVPDRKNFDSLLWAIVT
VFQILTQEDWNMVLYNGMASTSPCAALYFVALMTFGNYVLFNLLVAILVEGFQAEGDANR
SYSEDDRSSCNFDENSDKLKDSLHLSDPKICTLTPNGHLDLSPTPTGLYTADRLTFALGS
RKNSVISLGRANLEGRALCPGRSSLYHNWGRPAFQTQAMWGRRSSWNSLGRPSRALGLGL
EVGGGGSLRSCSPHAANPAEQESLLSPPHPPSHLAHPPPLLARHFVPQRDRRALSLELPE
LLQVPGNPLAQLLPYSRKKSFSGGLVGGGAGGEHQDCNGKAPSAQLQLQLQLPPHPHPHP
QLLTEVFPQVNTRKDREDLDDDIDYSLCFRIQKMMEVYRPEWCETREDWSVFLFSPQNRF
RRVCQSIIAYKMFDYVVLAFIFSNCITVALERPKIMQGSLERVFLTISNYVFTAIFVAEM
TLKVVSMGLYIGEQAYLKSSWNVLDGFLVFVSLIDIVVSMAGGAKILGVLRVLRLLRTLR
PLRVISRAPGLKLVVETLITSLKPIGNIVLICCAFFIIFGILGVQLFKGKFFYCFGPDVK
NITNKSDCLQANYKWVHHKYNFDNLGQALMSLFVLASKDGWVNIMYHGLDAVGVDQQPVI
NNSPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQNQEVEEAKRREDKRRRRMEKKR
RDAQKIPYYASYSSLRLWIHTLCTTYYLDLFITFIICINVITMSLEHYSQPRSLDLVLKY
CNYFFTSTFVLETLLKLTAFGFRRFFKDRWNQLDLAIVLLSVMGITLEEIDYSASLPINP
TIIRIMRVLRIARVLKLLKMAKGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELF
GELVCNEDYPCEGMSRHATFENFGMAFLTLFQVSTGDNWNGIMKDTLRECPTDYGPDYSC
NPSLQFISPMYFVSFVLTAQFVLINVVVAVLMKHLDDSNKEAKEEAEMDAEIELELATGA
LCCMGPEGVCAGGKKGGGAGGGGGGGVGESQWLDSVSLLIKDSFEGEMIDNLSGSVFHHY
SSSSLPVWKDCKSHPQLEQIRLAEIEQASLRSDQMSDKSSSPALPDDLSLDDQSVHQLLV
RECKDEKGSDSQGLEEAGGGGGSLTQAQTGGSRHCRAHSSVAKEGTPLLVEGAASASGSP
ALIRLPAEFFHPVAAAALPAPLRARVGRTSQGLRLTSPASWASLRSPGAHSRVLCTQYPS
HSDSSLATGSSDGSLQTTLEEGLSFSVSPPQDLKPPLPLLCPLPHPLPEDSTSCPPGQTL
RPRPSPSSGPALTLQATRGHQRSQSSGRGSISPGYTREDSMNPDLCDLEDLGIGISSSIG
GCSSSQAGNSEHLSETLSSLSLTSLLSPASLAPPGVKKCNSTGSLDQGARRGEGRQILGL
ELDSQGFLANPWGESGGEATEGQLGEATGLKGNSSSQTTVGSCSKNR
NT seq
6444 nt
NT seq
+upstream
nt +downstream
nt
tttgctgtccatacgtggttcgagaggatcagtatcatggtgattctgctcaactgtgtc
accctggggatgtaccagccctgtgagaacatcgactgcacttcagaccgctgtcagata
ctacaggctttcgatgcgttcatctacatattctttgcgttggagatggtggtgaagatg
gtggcgctgggaatcttcgggagacgctgttaccttggcgacacctggaacagactagac
ttcttcatcgtcatgtctgggatggtggagtactcgttggacctgcagaacatcaacctc
tcagccatcaggacagtcagggtcctcagacccctcaaagccatcaacagagtacccagt
atgcgtatcctggtgaatctcctcctggacactctgcccatgttgggaaacgtcctcctg
ctttgtttcttcgtcttcttcatcttcggcatcatcggagtgcagctgtgggcgggacta
ctgaggaaccgttgctacctcgaggaaaacttcaccctttcgtcaggtctgaccctgccc
gccccgtactaccagccggaggaggatgacgagcgccctttcatctgctctctggcccag
gataacgggatcatgtcatgtggtgacgtcccggcccggagggaggggggaaggacctgc
tgtctggacagggaggatgcctaccaccgccagtccctggggctcagccctgaaccacta
gtcaacggttcagccagtggagtgggtctctgtatcaactggaaccagtactatactaga
tgccatactggacatagtaatccacacaagggggcgatcaacttcgataacatcgtatac
gcctggattgttatcttccaggtgatcactctggagggctgggtagagatcatgtactat
gtaatggatgctcactccttctacaacttcatctacttcatcttcctcatcattattggc
tcgttcttcatgatcaacttatgtctggtggtcatcgccacccagttcagtgagaccaag
cagcgggagcaccagctgatgcaggagcagcgggcccagtgcctgtcctcctctaccctg
gccagcctgcatgaaccgggggactgctacgaagagctcttccagctggtctgccacatg
ctgcgcaaggcccgcaggagatctgtagccctgtataaccaactgagaggaaggcctctg
ccaccaccacccactagagggagaggaagaggaagaggaggaggggaaggaggagggaat
gcgaacggaggggacaggcatcacccgaggcagccgcgacaatctcactgtcctcaccaa
agcaagctggacccaatccacagctcccaacccctgggcaactccattgccctggccgtc
cctcaaaacacagaggactgtcctcagtgcgctgcggcactgtcactcagggagggggcg
ggagctgtgggcgactcagccaatggggaggaggaggagggggccgtggaggagacggac
agggaggagaaccacttggaggagaaagcagaagagggggagggagtgaagaagaagagg
aagaggaggtcgtgttttgggcactgtaaggacatgtgggatgagatgaggaagaaactt
tggggcatcgtggagagcaaatacttcaatagaggaatcatgatcgctattctcatcaat
actatcagcatggggatagaacatcacaaccagccggaggagctgactaacgtgttggag
atcagtaacattgtgttcaccagtatgttcaccctggaaatgatcctcaagctgaccgcc
tttggcttcttcgcctacctgaggaacccctacaacatcttcgacggcatcatcgtcatc
atcagtgtgtgtgagatcataggccagtctgatggaggtctgtctgtcctgaggaccttc
agactgttgagggtgatcaagctggtgcgcttcatgcccgcgctgcgcagacagctggtg
gtgctgatgaagaccatggacaacgtggccaccttctgcatgctcctcatgctcttcatc
ttcatcttcagtatcctggggatgcatatctttggctgtaagttcagtctgaagacagag
actggagacactgttcctgacaggaagaactttgactctctactgtgggccattgtcact
gtgtttcagattctgactcaggaagactggaacatggtgctgtataatggaatggcctcc
acctctccctgtgctgctctctactttgtggctctaatgaccttcggcaactacgtcctc
ttcaacctgctggtggccatcttggtagagggctttcaggctgagggggatgccaaccgg
tcgtactccgaagacgacaggtcctcgtgtaactttgacgagaactctgacaagctgaag
gactcgcttcatctctctgaccctaagatctgcaccctaacccccaacggtcacctggac
ctgtccccaacgcccacgggtctgtacacggccgacaggctcactttcgctctgggctca
cgcaaaaacagtgtcatctctctgggcagggctaacctggagggcagggctctgtgtccg
gggcgcagctccctgtaccacaactggggccgccctgccttccagacccaggcaatgtgg
ggccggcggtccagctggaacagcctgggtcggccctcccgagccttgggcctgggattg
gaggtaggaggagggggcagcctgcgctcctgcagcccccacgccgccaacccagccgag
caggagtccctcctctccccccctcaccctccctcacacctcgcccaccctcctcccctc
ctggcccgacactttgtcccgcagcgggaccgccgggcgctgtccttggagctaccagag
ctcctccaggtcccggggaaccccctggcgcagctgctgccttactccaggaagaagagc
ttctccggtgggctggttggtggaggggctgggggggagcaccaggactgcaatgggaag
gccccctcggcccagctccagcttcaacttcagctgccaccacatccacatccccatcca
cagctactgacagaggtgttccctcaggtcaacacacgcaaggacagagaggacctggac
gatgacatcgactatagtctgtgtttccgtatccagaagatgatggaggtttacaggcca
gagtggtgcgagaccagagaggactggtctgtcttcctcttctctcctcagaacaggttc
aggcgggtatgccagtccatcatagcctacaagatgtttgactatgtggtgctagcattc
atcttctccaactgtatcaccgtggctctggagagacccaagatcatgcagggcagcctg
gaaagagtattcctaaccatctccaactacgtcttcacagccatctttgtagcggagatg
acgctcaaggtggtgtctatgggcctgtatataggggaacaggcatatctgaaaagcagc
tggaacgtgttggacggcttcctggtctttgtgtcgttgattgacattgtggtgtccatg
gcgggcggggctaaaatcctgggggtgctgagggttctcagattactccgcacactgcgc
cccctcagggtgatcagtcgagccccaggtctgaagctggtagtggagactctgataacg
tctctgaaacctataggaaacattgtccttatctgctgtgctttcttcatcatatttggt
atcctgggggtgcagctgttcaaagggaagttcttctactgcttcggccccgacgtcaag
aacatcaccaacaagtctgactgtctgcaggccaactacaaatgggtccatcacaagtac
aactttgacaacctgggacaggctctgatgtccctgtttgtgctggcttcgaaggacggc
tgggtcaacatcatgtaccatggcctggacgctgtaggggtggaccaacagccagtgatc
aacaacagtccgtggatgctcctctacttcatctctttcctcctcatcgtcagtttcttc
gttctcaacatgtttgtgggcgtggtggtggagaacttccacaagtgccgtcagaaccag
gaagtggaagaggctaaaaggagagaggataaacgacggagacgcatggagaagaagagg
agggacgcccagaagatcccctactatgccagctacagctccctccgcctgtggatccac
actctgtgtaccacctactacctggacctcttcatcaccttcatcatctgtatcaacgtc
atcaccatgtcactggaacactacagccagccacgatctctggatctagtgttgaagtac
tgtaactatttcttcacgtccacctttgtactggagaccctcctgaagctcaccgccttc
ggcttccgacgcttctttaaagacaggtggaaccagttggatctggccatcgtgttgctg
tcagtgatgggcatcactctggaagagatcgactacagcgcttctctccccatcaaccct
accatcatacgcatcatgagggtgttgaggatcgcacgagttctgaagctgctgaagatg
gctaaaggaatgagagctctgctggatacggtggtccaagccctaccacaggtggggaac
ctgggcctgctcttcatgctcctgttcttcatctatgcagcactgggggtggagctgttt
ggagaactggtgtgtaacgaggactacccgtgtgaggggatgagccgccatgctaccttt
gagaactttggcatggccttcctcaccctgttccaggtctccactggggacaactggaat
ggaatcatgaaggacacgttgagggagtgccctacggactacgggcctgactactcctgc
aaccccagcctgcagttcatctctcccatgtactttgtgtcctttgtgttgacggcccag
ttcgtcctgatcaacgtggtggtggcggtgttgatgaagcacctggatgactccaacaag
gaggccaaggaggaggcggagatggatgctgagattgagctggagctggccacgggggcc
ctctgctgcatgggaccggagggagtctgcgcaggagggaagaaaggtggaggagcaggg
ggaggtggcgggggaggtgtgggagagagtcagtggctggacagtgtgtctctgctgata
aaggactcatttgaaggagagatgattgacaacctctctggatctgtcttccatcactac
tcctctagctctcttcctgtctggaaggactgcaagagccacccgcaactagagcagatc
cggctggcagagatagagcaggcgtctctgaggtcagaccaaatgtcagacaagtcgtcc
tctccagccctacctgatgacctcagcctggacgaccagagtgtccaccagctgctggtg
cgggagtgcaaggatgagaagggcagtgactcccagggcttagaggaagctggtggagga
gggggctccctgacccaggcccagacaggggggtcgaggcactgcagggcccacagttca
gtagccaaagaggggactccactgctggtggagggagcggccagtgcctctggttctcct
gctcttatccgtctgccagcggagttcttccaccctgtggcagcagcggccctgcctgcg
ccccttagggccagagtagggcgcacctcgcagggtctcagactcacctccccggcctcc
tgggcctccctgcgctccccaggagcccacagccgggtgctctgcacgcagtacccgtcc
catagtgactcgtctctggccacggggagctccgatggcagcctccagaccaccctggag
gaaggactcagcttcagtgtttcgccccctcaagacctgaagccccctctccccctgctc
tgccccctgccccacccgctccctgaggactccaccagctgcccaccaggccagactctg
agaccgcggcccagcccctcgtcaggccctgccctcaccctccaggccactcggggccac
cagcggagccagagcagcggcaggggtagcatcagccccggctacacccgggaggactcc
atgaaccccgatctgtgcgacctggaggacctgggcatcgggatcagttcgtccatcggg
gggtgtagctccagccaggcaggcaacagcgaacacttgtcggagacgctaagcagcctg
tcgctcacatcgttgctctcgcccgcctccctggcgcccccaggggtgaagaaatgcaac
agcacggggagcttggaccagggggcgaggaggggggaggggagacagatcctaggattg
gagttggactcccagggcttcctggccaacccgtggggagagagtgggggagaggcaacg
gagggacagttgggagaggcaacgggcctcaaggggaatagctcaagccaaacgacagta
gggtcctgtagtaaaaacagatga
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integrated database retrieval system
