Coregonus clupeaformis (lake whitefish): 121551881
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Entry
121551881 CDS
T08357
Name
(RefSeq) DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03030
DNA replication
cclu03410
Base excision repair
cclu03420
Nucleotide excision repair
cclu03430
Mismatch repair
cclu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121551881
03410 Base excision repair
121551881
03420 Nucleotide excision repair
121551881
03430 Mismatch repair
121551881
03440 Homologous recombination
121551881
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cclu03032
]
121551881
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121551881
Enzymes [BR:
cclu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
121551881
DNA replication proteins [BR:
cclu03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
121551881
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
121551881
MMR (mismatch excision repair)
DNA polymerase delta complex
121551881
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
POL3_N
REV3_N
DNA_pol_B_2
Motif
Other DBs
NCBI-GeneID:
121551881
NCBI-ProteinID:
XP_045060994
LinkDB
All DBs
Position
19:complement(57854878..57888501)
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AA seq
1103 aa
AA seq
DB search
MDAKRRNGGPPMGGASQAKRGKTGGDWEDSPSIFEEELALFEEADMEEREGQAGHDVIPV
GELFSADLNPRWRRPQAAPLNPDSDTLVFQQIDLDYYLGAAVAGMPGQSQGNVPIIRMFG
VTDSGNSVCCHVHGFAPYFYTPAPNGFTSDHLSEFKRELNSAVLKDMRSNKDNISVTVLA
VDITRKESMYGYHGKRIVDFLCITMAMPRLIAPAKRLLEQGFKFGPFPIQSFSSYEANID
FEIRFMVDSDVVGCCWIELPKGKYRVREERNVGETDTHHPGKVSLCQYEVDVGWTQLISH
PAEGEYQRIAPLRVLSFDIECAGRKGIFPEAEKDPVIQIASMVQRQGEKEPFIRTVFTLQ
SCSSIVGSQVLCFTKESQLLQSWAEFVRTVDADIITGYNIQNFDLPYLLNRAATLKVHLF
PYLGRVRGIKSVLRDSSFQSKQMGRRENKILNMEGRVQFDLFQVLLRDYKLRSYTLNAVS
FHFLQEQKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLLQKLMCVINYMEMARV
TGVPLTYLLSRGQQIKVVSQLLRQAMKQGLVMPVVKPEGGEDYTGATVIEPEKGYYSVPI
ATLDFSSLYPSIMMAHNLCYTTLLQKGSAEKLGLTPEDFIKTPTGDMFVKSSVRKGLLPD
ILEDLLSARKKAKAELKKETDPFKKQVLDGRQLALKISANSVYGFTGAQVGKLPCLEISQ
SVTGFGRQMIEQTKQLVESKYTISNGYQADAKVIYGDTDSVMVKLGVDTVSRAMEVGREA
AEWVSSHFTPPIKLEFEKVYYPYLLINKKRYAGLYFSSSADTHDKMDCKGIETVRRDNCT
LVANLINTCLQTILIDRDPQGAVAHAKEVISDLLCNRIDISQLVITKELTRTAQEYAGKQ
AHVELAERMKKRDAGSAPQLGDRVPYVIIKAAKGVAAYMKSEDPIYVLENNIPIDTQYYL
EQQLSKPLLRIFEPILGESKAVSVLLKGDHTRCKTVLTSRVGGLMAFATKRSTCIGCRAV
LKNDAAVCDFCKKKESELYQKEIFHLSTLEERFSRLWTQCQRCQGSLHEDVLCTSRDCPI
FYMRKKVQKDLDDQEKLVSRFGW
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atggatgctaaaaggaggaatggcggcccaccgatgggcggggcatcccaggccaagcgg
ggtaaaactggcggggattgggaagacagcccgtcaatcttcgaggaggaactcgccctg
tttgaagaagccgatatggaggagagggaaggacaggcagggcatgatgtcatccctgtt
ggtgagctgttctcagcagacctcaacccccgatggcgtcggccgcaggccgcccctctt
aacccggactctgacaccctggtcttccaacagatcgacctcgactactatttaggggct
gctgtggctggcatgccaggtcagtctcaggggaacgtaccaataatccgcatgttcggg
gtgacggacagcgggaacagtgtgtgctgccacgtgcacggctttgccccctatttctac
acacctgcccccaatgggttcaccagtgatcacttgagtgagttcaaaagggagctcaac
tctgctgtgctgaaggacatgcgctccaacaaggacaacatatcagtcactgtactggcg
gtggacatcacacgcaaagaaagtatgtatggttaccatgggaaacggattgtggacttc
ctctgcatcaccatggcaatgcctcgtctgattgccccggcgaagaggctcctggagcag
ggctttaagtttggacccttccccattcagagcttctcttcctacgaggctaacatcgac
tttgagatcaggtttatggtggacagtgatgtggtgggttgctgctggattgagctgccc
aaagggaagtaccgggtgagggaggagaggaacgtgggggagactgacactcaccaccca
ggcaaggtgtctctgtgtcagtatgaggttgatgtgggatggacccagctgatcagtcac
ccagcggagggagagtaccagaggatcgctcctctcagggttctcagctttgacattgag
tgtgccggaagaaaagggatattcccagaggcagagaaagacccagtgatccagatagcc
tccatggtgcagcgccagggagagaaggagcccttcatccgcacagtcttcaccctccag
tcctgctccagcatcgtgggctcccaggtcctgtgctttactaaagagagtcagttacta
cagagctgggctgagtttgtgaggacagtggatgcagacatcatcactggctacaacatc
cagaactttgaccttccctacctgctaaacagagcagctaccctgaaggtccatctgttc
ccctacctgggcagagtacggggcatcaagtcagtcctgagagactccagcttccagagc
aaacagatgggccgcagagagaacaagatccttaacatggaggggcgagttcagtttgac
ttgttccaggtgctgctgagggactacaaactgcgctcgtacacactcaacgccgtcagc
ttccacttcctgcaagaacagaaggaggatgttcagcattctatcatcacagatctgcag
aatggtaatgagcagacccggaggcgcctggcagtgtactgtctcaaagacgcctacctg
cccctgcgtctgctgcagaagctgatgtgtgtgatcaactacatggagatggccagagtc
accggggttcccctcacctacctgctctccagaggccagcagatcaaagtggtgtcgcag
ctactgcggcaggcaatgaaacaggggctggtcatgccagtggtgaagcctgagggaggt
gaagactacactggagctacagtcattgagccagagaaaggatactacagcgttcccatc
gccaccctggatttctcctccctgtatccctccatcatgatggcccacaacctctgctac
accaccctgctccagaagggctcagccgagaagctaggtctgaccccagaggacttcatc
aagactcccacaggtgacatgtttgttaagagctcggtgaggaagggacttctgcctgat
atcctggaggacctgctctctgccaggaagaaggccaaagcggagctgaaaaaggaaacg
gatcctttcaagaaacaggtccttgacggccgacagctcgctctcaaaatcagcgccaac
tccgtctatggctttacaggggctcaggtgggcaagctgccctgccttgagatctcacag
agtgtcactgggtttggcagacagatgattgagcagaccaaacagctggtagaatccaag
tacaccatctccaacggttaccaagccgatgccaaggtcatctacggggacacggactct
gtcatggtcaaactgggcgtggacactgtgagcagggccatggaggttgggagggaggcg
gcagagtgggtttcctcccacttcacccctcccatcaaactggagtttgagaaggtgtac
tacccctacctgttgatcaacaaaaagcgctacgcaggcctctacttctcctccagcgct
gacactcacgacaagatggactgcaagggtatcgagacggtccgccgagacaactgcacc
ctggtggccaatctgatcaacacctgcctgcagaccattctgatagacagggatccccag
ggtgcggtggcccacgccaaagaggtgatctctgacctgctgtgtaaccgcatcgacatc
agccagctggttatcaccaaggagctgacacgtacagcccaggagtacgctgggaaacag
gcgcatgtagagctggccgagaggatgaagaagagagacgcgggtagcgccccgcaactg
ggagacagagttccctatgtcattatcaaagctgccaaaggagtagcagcatacatgaag
tctgaggacccaatctatgtgttggagaacaacattcccattgacactcagtactacctg
gaacaacagctctccaagccactgctccggatctttgagccaatcctgggagagagcaaa
gcagtgagtgtcttactgaagggggatcacacgcgctgtaagacagtgttgacctccagg
gtgggggggctcatggccttcgccaccaagaggagcacctgtattggctgcagagcagtg
ctgaagaacgatgcggctgtgtgtgatttctgtaagaagaaggagtcggagctgtaccag
aaagagatcttccacttaagtacgctggaggagcgcttctctcgcctgtggacacagtgt
caacgctgtcagggctctctccatgaggatgtgctctgtaccagccgggactgtcccata
ttctacatgaggaagaaggtacagaaagacctggatgatcaggagaagctggtgtctcgc
tttggatggtga
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integrated database retrieval system
