KEGG   Coregonus clupeaformis (lake whitefish): 121551982
Entry
121551982         CDS       T08357                                 
Name
(RefSeq) LOW QUALITY PROTEIN: ubiquitin-associated protein 2
  KO
K26545  ubiquitin-associated protein 2
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:cclu04121]
    121551982
   03400 DNA repair and recombination proteins [BR:cclu03400]
    121551982
Ubiquitin system [BR:cclu04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Multi subunit type E3 associated proteins
    121551982
DNA repair and recombination proteins [BR:cclu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     121551982
SSDB
Motif
Pfam: UBAP2-Lig UBA_RAD5A GIP1_N UBA_4 Methyltransf_32
Other DBs
NCBI-GeneID: 121551982
NCBI-ProteinID: XP_041720613
LinkDB
Position
18:21131547..21163310
AA seq 1140 aa
MMTSVVSNPARGTRDRALPTTTQTTQPQKQIQATAEQIRLAQMIYDKNDADFEDKVKQLI
EVTGKTQDECMVALHDCNEDVNKAINFLLESTSDTTSWETVGKKARGPGKEGGPSEMKDN
RDKRDREASRGRGGPNRRGRGTSRSREVRSEENVFEMGPGDRGADRGRRGRGVAGRGLAG
RGRAAGGNRFSSQGMGIFNPADYNANSGVSRQETWETEGSDGGDGTGGTWRGNLEDWAAE
DWNEDLSETKVFTASAPANHITPGHNVGLALLLPKAGVVEAELGGMEPPAVEGLGGHSLV
FTNSHHNGTRTATHSYASAAANSYAHAALPPRQSSVLGSGFGALSGPKPAQDEVRIPEQL
NGPRLAPRPNQQLVTTGNGCVAKESGPPAVEVPSPISASEFKAPRVENGPVPTSQCKTHT
VDLKMQPEPSAVLSQLAQRQQQAQQSSLPKAEPLSLPPSVPTPPGHGHYDAGPPPPRDGP
SPGVKLALDHQAPMAEPQQRQIKTQRRRVPPPSKIPSSAVEMPGSADVSGLNVQFGALDF
GSEPSVTDMGHQAEPAREPASTAVPQPQSSLFSKPGSVSEPLGSSPSMPLVSDPSFPSPS
LGLPCATPSPSLGLPCAAPPSSNPSASRVDSGPPRSMPSHLGYSQSKDAPSSPLTNGYCG
MRTQGPQDSTSLASRTQKPESPPMSSESGPVHHVPSPAPTPSHSAPLPSLSSHVTSTYSS
GSALSTSSSLTMTSEESSSLHAFSSSGPSINAAVSSSNGMMHGPGALGLTGNAALSAAGR
TAQPLLTTTSGESRRTLPSHIGKPPPNLAQGVPPLLANQYIMGPGGLLPAYPQIYGYEDL
QMLQSRLPMDYYGVTFPGTTATMPGRDGLATNPYSGEATKFGRGDSSSPAPPTSLSQGPS
QPPQAQSQSQPTQNQAFLNPPLPPGYGYTGLPYYAGMPGVPSAFQYGPTVFVPPASAKQP
NMGLGNPSSQYHQQHQPSYGQHTYGTAFDDLSQGHAGEYSKGGYGGSAQSQAKSAGSGPG
KAPGLSGSGSSGGVPEMGASMYSKTQSFDKQGFHTGTPPSFSLPSALGGTGPLNPGGAPG
YAPAPFLHILPAHQQPHSQMLHHHLAQDGQGGPGQRNQSSSMQQKNQGNKSSYGSPYWAN
NT seq 3423 nt   +upstreamnt  +downstreamnt
atgatgacttcagtggtcagcaatccagctcgaggaactcgagacagagcgctgcccacc
acaacacaaaccacacagccacaaaaacagatacaggccacagcagaacagattcggctt
gcccagatgatctacgacaaaaatgatgcagactttgaggataaggtcaaacagctgatt
gaggtgactgggaagacccaagatgagtgtatggtggccctccatgactgcaacgaggat
gtcaacaaagccatcaatttcctgctggaaagcacctctgacacaacctcctgggagacg
gttggaaaaaaggcacgaggccccgggaaggagggaggaccctctgagatgaaggacaac
cgagacaagagggatcgcgaggcaagccggggccgcgggggccccaacaggaggggccgt
ggaaccagccgcagccgagaggtgcggtcagaggagaatgtgtttgaaatgggtcctgga
gatagaggggccgaccgtggtcgcagggggaggggcgttgctggcagaggtttggcgggt
cgcggaagagcagctggtgggaaccggttctcctctcaggggatgggaatcttcaacccc
gctgactacaatgccaactctggcgtgtctcgccaggaaacctgggaaacggaggggagc
gacggtggagatgggacaggaggaacatggagaggcaacttagaagactgggctgcagaa
gactggaatgaggatctgtctgagaccaaagtgttcactgcctctgctcctgcaaaccac
atcacacctggacacaatgtgggcttggccttgctgctgcccaaggcgggcgttgtggaa
gcggagctgggtggcatggagccccctgccgtcgagggcctgggaggccatagcctggtg
ttcaccaactcccatcacaatggcactcgcactgccacacacagctacgccagcgccgcc
gccaacagctacgcccacgccgccctgcccccacgtcagtcctcagtcctgggctctggt
tttggggctctgagtgggcccaagccggcccaagatgaggtcaggataccagagcagctc
aacgggccccggctcgccccgcggcccaatcagcagctggtcaccacgggcaatggctgt
gtcgccaaagaatccggtccacctgcagttgaagtcccctcccccatttccgccagcgaa
ttcaaggccccaagagtggagaatggcccagttccaacctctcaatgtaagacacacaca
gtggatctgaagatgcagccggagccgtccgctgtcctcagccaactggcccagcggcag
cagcaggcccagcagagctctctgcccaaggcagagcctctgtctcttcccccctcggtc
cccactcccccaggccacggccactacgacgccgggcccccgcctcccagagatgggcct
tcccccggtgtcaagctggctctcgaccaccaggcccccatggctgaaccccaacagagg
cagatcaagacccagagacgcagagtaccacctccctccaagatcccctcgtcggctgtg
gagatgccaggctcggcagacgtgtctggtctcaacgtgcagtttggggctctggacttt
ggctcggagcccagtgtgactgacatgggccaccaggctgagcctgccagggagccggcc
tccacagccgtacctcagccccagagtagcttgttctcaaaacctggatctgtcagtgag
cccctgggcagctcgccatccatgcctctggtgtcggaccccagtttcccctccccgtct
ctgggcttgccctgtgccacgccctctccctccctgggtctcccctgcgccgccccaccc
tcctccaacccctcggctagcagagtggacagtggccctccgcggagcatgccctcgcac
ctaggctactcccagagcaaagacgccccctcctcccctctcaccaatggctattgtggc
atgaggacacagggcccacaggactcaacgtcattggcctctcgtacccaaaagccagag
tcgccgcccatgagcagtgaaagtggccccgtccaccatgttccctccccggcccccacg
ccctcccactccgcccccctgccatccctcagcagtcatgtcaccagtacatactcgtca
ggatctgccctctctacaagctcctccctcacgatgaccagtgaggagagcagcagtctc
cacgccttctcctcctcgggcccttcgatcaacgccgctgttagcagctccaatggcatg
atgcacggccccggagcgcttggtctgaccggcaacgccgccctctcagccgccgggcgc
accgcccaacctctgctgaccaccacctcgggtgagtccaggagaaccctgccgtcacac
ataggcaaacccccccctaacctggcccaaggagtgccccctctgttggccaatcagtac
attatgggccctggaggcctgcttcctgcatacccgcagatctatggatatgaggacctg
cagatgctgcagtctcgtctgcctatggactactatggagtcacattccctggtacaacg
gcaacgatgcctggcagagatgggctagccaccaatccatactcaggtgaagcgaccaag
tttggtcgaggggattcgtcatccccggctccccccaccagcctttcacagggcccctca
cagcccccccaggctcagagccagagccaaccgacccagaaccaggccttcctcaacccc
cctctgcccccgggctacggctacaccggcctgccctactacgccggcatgcccggggtg
cccagcgccttccagtacggccccaccgtcttcgtgcctccggcctcggccaagcagcca
aacatgggcctggggaacccctccagccagtaccaccaacagcatcagcccagctacggc
cagcacacgtatggaacagcttttgacgacctgtctcagggccacgcgggggagtacagt
aagggagggtacggaggctctgcccagtcacaggccaaatcagctggcagcggcccaggg
aaagctccaggtttgtccggctcgggcagcagtggaggggtgcctgaaatgggtgcttca
atgtacagcaagacacagtcttttgataagcagggcttccacacgggaacccccccctcc
ttcagcctgccgtctgccctggggggcacaggccccctgaaccccggcggtgcccccggt
tacgccccagcccccttcctccacatcctgcctgcccaccagcagccccactcccagatg
ctgcaccatcacctcgcccaagacggacagggtggacccggtcagcgcaaccagtccagc
agcatgcagcagaagaaccagggcaacaagtccagctatggcagcccttactgggccaac
tga

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