Coregonus clupeaformis (lake whitefish): 121551985
Help
Entry
121551985 CDS
T08357
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121551985
Membrane trafficking [BR:
cclu04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
121551985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_M
VPS13_N
VPS13_VAB
VPS13_C
Fer4_11
Motif
Other DBs
NCBI-GeneID:
121551985
NCBI-ProteinID:
XP_041720627
LinkDB
All DBs
Position
18:21385556..21457852
Genome browser
AA seq
2632 aa
AA seq
DB search
MYVIETQKVLDLNINLMASYVIVPQTGFYDSTQNLMLLDLGHFKVSSLSREGLPQLSVGR
STIEDIMSRAYDRFDVQLSSLQFLYSKPDGDWKKARKLRQSALHILEPVDVKVVFSRAMV
VTDSRMPKFKISGELPLLSLRISDDKVRGVLELIDSIPLPESRPAPRSTNMHSTSKAPKQ
SYTPQLTPRKPTMAELRNSLIWESGSEEDLFYDAPSSPIGDRPFFPDNMPSPLQRSDSVK
RRGLVKKDPKKNMTEFLMTFEISKLSVQLCRLSGGQEVTVLHLDIEGLGTELKLRTFDMT
SYTFLREICLECPEYMDSEEKKVHLITTLDNTEDDLLTLEYTKADKNGPEFKSEYKNTEQ
SVKVNFSSLDIHLHTEALLNAMNFLISLLPPTKEAAPSQEELPTIPEEDEGEGEEGEKKE
ESAVAKKTSSKKSKFEDVVNLHIRADLNCLKVFIRGQSHRIAEISIEGLVSEVLMRKKAV
EVLANLKNIVILDCDKEALYKQCVSIADKEVFAFRMVNHTEATEGDAYLDMRKVDTSITL
TVGCIQVIFLNKFVSSILAFINNFQVAKEALAEVTVQAAEKAATGVMELAERSTRISLDV
DFNAPVVFLPQSSSSTNVIVADLGMVTVKNRFAMVPSQMHVKIPPIIDTMTVGLSELKMY
RTTFEEGRFQGEIQLLKPVNLDLSIQRNLSASWYHSIPDIEITAHLKPMNLILSQDDMTV
VLRTLSENLSETSDAASPPPPPRVVDRSDTASTKGSQASGGTGTNPTSGNTVVTAAVVET
QKSTKLKSTLKLDFKFDSMTLVLYSPNGTEVQVLDSRDEQLKLAEFTLGTISTSVHMFSD
GSMKASVKLTDCLLDDKRCRVKKITARMMAMRPGAERNVMVEVNYKQGREGTSLDTVVQD
VYLCASMEFLLTVADIFLKASQQGFSSAAPKNSSSTKPTAAAASKEPAPVGGVAKSEINV
LVKNPQIVFVADLTRADAPALVMTTECELVMKSDPDGQLMTAVVKDLKVVACPFLKEKRN
KETTVLQPCQVFFKSTQSSTSPQAMEVCINALTLKVSPIIINTVITIQSVLSPAGAETPQ
SELESPVPPDLWERRSWRDLKLWFLEEEGKDEDAQSLVPLIPQGESLQVAINSICLTLEA
GVGHRTIPMLLAKSSLHGDVKNWSTLINLHSQLNLEVHYFNEVMGVWEPLLEPLEDETRD
GFRPWTLGLKMKKKPVKYTGISEEVDYSIPDYKTVISISSKDQLNITLSKCGLGMLSNLG
TAFAEAAKQASDSFQKDEAPFVVKNRLGLTVSVVHSELFCPLGREATERRVELQNGESLN
MDYLRTTTHSDQFSAMTSLVAKDYYIQPTPVGHTSTGVIPLIKVGRGMYSVMHKDSGVTR
FLVCQIYSVEGSKYIKIRSPFQIINHFSIPFRVMEGSTCLGISLPTEEFCVPLDSYRSEL
RLQPVTEGDDQYDCSEGFSYELVSQQPGARVQQTCHCHGDSTGVLMVNIVPLKDTVTSQH
TGVAGEHFDEPYILHLWPSVLLRNLLPYPITYRLQDSEDPSPITLMDGHSAQLHTAIMDR
SSLELRLLDYLGQDWQAHYGLRGDLDEITFIVFSSLRDEEEAVRLGEGGEGKRAELDIAV
HVKYDAGQTEVAIHSPYWMVNKTGRLLQYKADDIHRKHAMDYDMPLLFSFKPHNFLQNNK
VRLMISDSELSDDFSLDTVGSYGEVKCKGRLKDYVIGVKIDASSFSLTRIVSFVPYYLLV
NRTKHVIWVGEEGQDDWTEARPQQAAIPFWPERDSKKLKVKVEGSRSTPQTMDFTKPENC
LLLHLDNTVSSLQTYLGGVIVDVNLSDHSIVIRFSDYHDGAAPFLIINHTQEQTVEFYQR
FRRDSSEWVADELLDLSFSVEETQRSSQKEKDKLNPGMAMYYTWAEPTGSRCLAWQCGSY
SGELKSEEDLRLDVNEEGKLYLISFYEGLQRVALFTEDRRIYKLLCESEKAELAEQEIIL
SLQDVGVSLVNNSSRQEVSFIGITSSDVVWESKPKKKSRWKPLSGKDAELLETHFKEYTE
SGPVDNAILDLENNFQVSLTPNGQDMRMIQPYDAPIRRSFLPGVKVEYSVSARQSAYRVQ
INRIQIQNQLPGAIFPYVFYPIKLPKSVTMDSEPKPLTDISVVTRAAGHSDISRIKYFKV
LIQEMDLKLDLGFLYAILDLFTPENASVMTSEQQVELFEKDIEYLKTELNHVSATDTSPI
SLYEYFHISPIKLHLSFSLSSGGEDGNKEKRETEIIPVQSLNLLLKSIGATLTDVQDVVF
KLAFFELTFQFRTRQQLQWEVIRHYSKQAIKQMYVLVLGLDVLGNPFGLIRGLSEGVEAF
FYEPYQGAIQGPEEFVEGMALGVKALVGGAVGGIAGAASRITGAMAKGVAAMTMDEEYQQ
KRREAMNKQPSGLREGLTRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLV
GAVARPTGGIIDMASSTFQGIKRAAETSQDVESLRPPRFIHEDGVIRPYKEREGIGSQML
QKIENGRFAKYRYFAHAKVNESDFLMITKRGIFFVTKGTFGQLTCEWQYLFDEFTKEPMI
VEGRRLRIEAKERVKSVFHAKEFGKIINFRSPEIAKWVLTKLEDARESLHKY
NT seq
7899 nt
NT seq
+upstream
nt +downstream
nt
atgtacgtgattgagacccagaaggttctggatctgaacatcaacctcatggcctcctac
gtgatcgtgccccaaaccggcttctacgactccacccagaacctcatgctattggacctg
ggtcacttcaaggtgtctagtctgagcagagaagggctgccacagctctctgtagggaga
agtactatagaggacattatgtcccgagcctacgaccgctttgacgtccagctcagcagc
ctacagttcctctacagcaaaccagacggggactggaagaaagcccgtaagctgaggcag
tcggccctccacatcctggagcctgtcgacgtcaaggtggtgttcagccgagccatggtg
gtcacagattcacgcatgcccaagtttaaaatctccggggagctgcctctcctgtctctg
aggatctctgatgataaggtacggggtgtgctggagctgatcgacagcatcccgctgccg
gagagcaggccggccccacgcagcaccaacatgcactctacatcgaaggctccaaagcag
tcatacacccctcagctaacccccaggaaaccaaccatggctgaactgcgcaactccctg
atatgggaatcaggctcagaggaggatctgttctacgatgctcccagctctcctatagga
gaccgtccgttcttccccgacaacatgcccagccctctgcagcgctccgactcggtcaag
aggagaggtctggtcaagaaagaccccaagaagaacatgacagagttcctcatgacgttt
gagatcagcaaactgtctgttcagctgtgtcgtctgtctggaggccaggaggtcacagtg
ttacacctggacatcgaggggctgggcaccgagctgaagctacgtaccttcgacatgaca
tcctacacattcctacgagagatctgcctagagtgccccgagtacatggattcagaggag
aagaaagtgcacctgatcaccacactagacaacacagaggatgatctcctcacattggag
tacactaaggctgataagaatgggccagaattcaagtctgagtacaagaacactgaacaa
tcagttaaggtgaacttctcgtctctggacatacacctgcacacggaggccctgctcaat
gccatgaacttcctgattagtctcctccccccgaccaaggaggcggcacccagccaggag
gagctgcccaccatccccgaggaggacgagggagagggggaggaaggcgagaagaaggag
gaatcggccgtggcaaaaaaaacatcttctaagaagtcaaagtttgaggacgtggtgaat
ttgcacatcagagccgatctcaactgtctgaaggttttcatccgaggccagagccacagg
atagcagagatcagcatcgagggcctggtgtcggaggtgctgatgaggaaaaaggcggtg
gaggttctggccaacctgaagaacatagtcatcctggactgtgataaggaggctttgtac
aagcagtgtgtgtccatagccgataaggaggtgtttgctttccgcatggtgaaccacacg
gaagccacggagggcgacgcctatctagacatgcgtaaagtggacaccagcatcaccctg
acggtgggctgcatccaggtcatcttcctcaacaagtttgtctcctccatcctggccttc
atcaacaacttccaggtggccaaggaggccctggctgaggtgactgtgcaggcagcggag
aaggcggccacgggggtgatggagctggctgagcgcagcacgcgcatctctctggacgtg
gacttcaacgctcctgttgtcttcctgccgcagtcctcctcctccaccaacgtcattgtg
gccgaccttggtatggtcacggtcaagaaccgcttcgccatggtcccctcccagatgcat
gtcaagatccctcccatcatcgacaccatgactgtgggcctcagcgaactcaagatgtac
agaaccacctttgaggaggggaggtttcagggggagatccagcttctgaagccggtcaac
ctggacctgtccatccaaaggaacctgtctgcctcctggtaccacagcatccccgacata
gagatcactgctcacctcaaaccaatgaacctgatcctgagtcaggatgatatgacggtg
gtgttgcggactctgagtgagaacctgtcagagacgtcagacgctgcttccccccctcct
cctccacgtgtagtggaccgctccgacacggcctctaccaaaggctcacaggcgtcagga
ggtactggtactaaccccactagcggcaacacggtggtaactgctgcagtggtggagacc
cagaagagcactaagctgaagagcacactcaaacttgacttcaagtttgactccatgacc
ctggtcctgtacagccccaatgggactgaggtgcaggtgttggactcgagggatgagcag
ctgaagctggctgagttcaccttggggaccatctctacatctgtccacatgttctcagac
ggatccatgaaggcctccgtcaaactcacagactgcctgctagacgacaagagatgcaga
gtcaagaagatcactgccaggatgatggcgatgcgtccgggtgctgagaggaacgtgatg
gtggaggtgaactacaagcaggggcgcgagggcacctctttggacacggtggtgcaggat
gtgtacctctgtgccagcatggagttcctgctcactgtggccgacatcttcctcaaagcc
agccagcagggcttctcctctgccgcccccaagaacagcagtagcactaaacccactgct
gccgcagcctccaaggagcctgctccagtggggggggtggccaagtcagagattaatgtt
ctggtgaagaacccccagattgtgtttgtggccgacctgacacgtgccgacgccccggcc
cttgtcatgaccacggagtgcgagctggtgatgaagagcgatccggacggtcagctgatg
acagcggtggtcaaggacctgaaggtggtggcctgccccttcctgaaggagaaaaggaac
aaagagaccactgtgctgcagccctgccaggtgttcttcaagagcacacagtcctccacc
tccccgcaggctatggaggtctgcatcaacgcactcacgctcaaggtgtcgcccatcatt
atcaacacagtgattaccattcagtctgtgctgagcccggccggggccgagacaccccag
tctgagctggagagccccgtgcccccagatctgtgggagcgccggtcctggcgggacctc
aagctgtggttcctggaggaggagggtaaagatgaggatgcccagtccctggtcccgttg
attccccagggcgagtccctgcaggtggccatcaactccatctgcctgaccctggaggct
ggggtgggccaccgcaccatccccatgctgctggccaagtcttccttgcacggtgacgtc
aagaactggagcaccctcatcaacctgcacagccagctcaacctggaggttcactacttc
aacgaggtgatgggggtgtgggagcctttgctggagcccctagaagacgagacccgagac
ggcttcagaccctggaccctgggattaaagatgaagaagaagccagtgaagtacacaggt
atatcagaagaagtggactacagcatccctgactacaagaccgtcatcagcatcagcagc
aaggaccagcttaacatcaccctctccaagtgtggactgggcatgctcagtaacctgggc
acggcctttgcagaggcggccaagcaggcatcggatagtttccagaaggacgaggctccg
ttcgtggtgaagaaccgtctgggtctgacggtgtcggtggtgcacagtgagctgttctgc
cccctgggtcgcgaggccacagagcgccgggtagagctgcagaatggagagagcctcaac
atggactacctccgcaccaccacccactcagaccagttctctgccatgacctcactggtc
gccaaggactactacatacaacccactccggtcggccacacttcaacaggcgtgattccg
ttgatcaaagtggggcgtggcatgtacagtgtcatgcacaaagactctggggtcacccgt
ttcctggtctgtcagatctactctgtggagggaagcaagtacatcaagatccgctctccc
ttccagatcataaaccacttctccatcccgttcagagtgatggagggctccacatgtctg
gggatctcactgcctacagaggagttctgtgtgcctctggactcttacaggtcagagcta
agactgcagccggtaaccgagggagacgatcagtacgactgctccgagggtttcagctac
gagttggtgagccagcagcccggtgcacgtgtgcagcagacctgccattgccatggcgac
agcactggcgtgctcatggtcaacatagtccctctgaaagacacggtgacatcacaacac
acgggagtggccggggagcactttgacgagccctacatcctgcacctgtggccctccgtc
ctgctccggaaccttctgccttaccccatcacctatcgcctacaggacagtgaagatccc
tcccccatcaccctgatggacggccactcggcccagctgcacaccgccatcatggaccgg
tccagcctggaactccgcctcctcgactacctggggcaggattggcaggcccactacggt
cttcgtggcgacctggacgagatcactttcattgtgttcagctccctacgcgatgaagag
gaggcggtcaggttaggagaggggggagaagggaagagagcagagctggacattgcggtg
catgtgaagtacgacgcgggccagactgaggtggccatccattctccctactggatggtg
aacaagacgggccgcctgctgcaatacaaggccgacgacatccaccgcaaacacgccatg
gactacgacatgcccctgctcttctccttcaagccacacaactttctgcagaacaacaag
gtgcggctgatgatctcggacagcgagctgtcggatgatttctccctggacaccgtgggt
agttatggtgaagtgaagtgtaaagggaggctcaaagattacgtgatcggcgtgaagatc
gacgccagcagtttcagcctgacccgtatcgtaagctttgtgccgtactacctgttagtg
aacaggaccaaacatgtgatctgggtgggagaggagggccaggacgactggaccgaggcc
agaccacaacaggcagccatcccgttttggcccgagagggactccaagaagctcaaagtc
aaagtagaaggcagtcggtcaacccctcaaaccatggacttcaccaaaccggaaaactgc
ctgctgctgcacctggacaacactgtgagtagtttacagacatacctgggcggggtcatt
gtggatgtgaacctatcagaccactcgattgtcatccgtttttctgactaccacgacggg
gccgcccccttcctcatcatcaaccacacccaggagcagacggtggagttctaccagaga
tttcggagagattcatcagaatgggtggcagacgagctgctcgacctctccttctcagta
gaggagacccagcgcagtagtcagaaggagaaggacaagctaaatcccgggatggcaatg
tactacacctgggctgagcccactgggtcacgctgcctggcctggcagtgtggcagctac
agcggcgagctgaagagcgaagaggacctgcggttggacgtgaacgaggagggtaagctg
tacctcatctcgttctacgagggcctccagcgggtggcgctgttcactgaggacagacgc
atatacaagctgctgtgtgagagtgagaaggccgagctggccgaacaggagatcatcctc
tccctgcaagacgtgggcgtctccctggtcaacaacagcagccgtcaggaggtgtccttc
atcggcattaccagttcagatgtggtgtgggagtccaagccaaagaagaagtctcgctgg
aaacccctgagtgggaaagatgccgagctgctggagacccacttcaaagagtacacagag
agtggaccagtggacaacgccatcttagacctggagaacaacttccaggtgtctctgacg
ccaaatgggcaagacatgaggatgatacagccatatgacgccccaatcaggaggagcttc
ctgccaggggtgaaggtggagtacagcgtatcggcccgccagagtgcctaccgtgtccag
atcaaccgcatacagatccagaatcagctacctggagcaatcttcccatatgtcttctac
cctataaaactacccaagtctgttaccatggactcagagcccaaacctctgaccgacatc
agcgttgttaccagggcagccgggcactctgatatctcacgcatcaagtatttcaaggtg
ctaatccaggagatggatctgaagttggacctgggcttcctatatgccatcttggatttg
ttcactccggagaacgccagcgtgatgacatcagagcagcaggtggagttgtttgagaag
gacatagagtatctgaagacagagctcaaccacgtgtcggccactgacacatcccctatc
agtctctatgagtacttccacatctctcctatcaagctgcacctgagtttctctctgagt
tctggaggagaggatggtaacaaggagaagagggagaccgagatcatccctgtccagtcc
ctcaatctgctgctgaaaagcatcggcgcaaccctcactgacgtgcaggatgtcgtcttc
aaattggccttcttcgagctgaccttccagtttcgcactcgccagcaactacaatgggag
gtcatcagacactactcgaaacaggcgataaagcagatgtatgtgctggtgttgggcttg
gacgtgctgggaaacccctttggactgatccgaggtctgtcggagggagtggaggctttc
ttctacgagccctatcagggagctatccaggggccagaggagtttgtggagggtatggcg
ctgggggtgaaagcgctggttggaggagcagtaggtggcattgcgggcgctgcctccagg
atcacaggcgccatggcgaagggtgtggctgccatgacgatggacgaggagtaccagcag
aagagacgggaggccatgaacaagcagcctagcggcctgagagagggccttacccgcgga
ggcaaaggactggtgtctggctttgtcagtgggatcacagggatcgtcaccaagcccatt
aaaggtgctcagaaggagggcgcggcgggcttctttaagggtgtgggcaaggggctagtg
ggtgctgtggccagacccactggaggcatcatcgacatggccagcagcaccttccagggc
atcaagagggcagctgagacgtcccaggatgtggagagtctgcgtccgcctcgcttcatc
cacgaggacggggtcatccgaccatacaaggaaagagagggcatcggcagccagatgcta
cagaaaattgaaaatggaaggttcgccaagtacagatactttgcgcacgccaaagtgaac
gagtccgatttcctgatgatcaccaaaaggggaatctttttcgtgaccaaaggtacattt
gggcagctgacctgcgagtggcagtatctgtttgacgagttcaccaaggagcccatgatc
gtggaggggaggaggcttcggatcgaggccaaggagagagtaaagtctgtgtttcatgcc
aaagagtttgggaagattataaacttcagaagtccagaaatagccaagtgggttcttacc
aagcttgaagacgccagggagagtctacacaaatactga
DBGET
integrated database retrieval system
