Coregonus clupeaformis (lake whitefish): 121552085
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Entry
121552085 CDS
T08357
Name
(RefSeq) laminin subunit alpha-4 isoform X1
KO
K06241
laminin, alpha 4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04510
Focal adhesion
cclu04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121552085
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121552085
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Laminin_G_2
Laminin_G_1
EGF_laminin
Laminin_II
Laminin_I
Laminin_G_3
EGF_LMN_ATRN
Motif
Other DBs
NCBI-GeneID:
121552085
NCBI-ProteinID:
XP_041720722
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All DBs
Position
36:38745337..38780470
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AA seq
1881 aa
AA seq
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MSATRALPCLCLLLSIVLSGIVCPATSIGLHWEQQSVMKVCAKGYFLSNQKKCLPCNCKA
HSETCEDITGVCISCQDHTTGDFCEICEDGYMPDVSTYGRHSCRPCACPLSSPSNNFAEH
CDRSSNILRCKCLEGYAGHYCERCAPGFYGNPMVIGDSCKSCDCNGNSDPNHIFNECHNV
TGFCQNCWGDTAGANCERCAPGFYGDAISAKNCRACECSKCGTASCDDRTGTCHCKPGVT
GQLCDQCEEGHTGFNNCQGCQRCDCGPAGLRPTCHPLTHSCQCQPGAGGRYCERCLPDHW
NYGPSGCQKCDCASSHCDMHTGECLPEAATINLCNISCDECIWHLIGDLRLSNKTLDQMR
VSVLNISTGAAANDRLKYYNYTAQRLQTQFVNWRNKSALMRTQTGQLEGASAALLLDINH
LAETESAVKFLGERVDEDTIESVTLADELTTNLTTLNVLIEEMISDWELYSVHQDLDPEI
IRQKTAMAEGMVAWMKKLDLSPREPIATDESTEAHDLLRRMRQLDKNLISTDSRVAPVRE
VLSRFTNKLSEAQEILQKAANTVQETEDMNKANTVKFQRSEAKQQELIENYKAVNDTLQM
AKDLIVDTENTVPEMDLLVQNVTEYHAAIDGASKRLQEKTEALSLADRDLVQRAQDRAED
LQSQADELEYNLKRSDANGFVQKALVAANVYNNIVQYIEEANITGLTTMDLATRAKDAST
GINTQLGFLKTQSDNIFKESVSLRSEQFEVEAEVLDKIKYIEETKETMEDNTKKLAVVLK
DIKGIEPDRTTKRLELTKEVAEGTLNRSVEVLETITPIHEKVEEWAINMKNQDYSAAAFD
RAVVSAGEAVENLSELVPELLDKLRVVEEKNPVNNVTTNIMRIRELIAQARSVAKKVQVS
MKFNGQSSVQVQPHTNLKDLKTVTTISLFIRVDPDKDPIEDRFIFYLGDRNGRKDYMGLA
IKNDNLVYVYNLGGEDVEISLGSKPVSQWPPVFNLIKVERLGRHGKVFLTVPSQTSTDEQ
KFIQKGEAFGTDSLFDLDPEDTVFFMGGVPADVRLPPALSLAPFVGCIELASLNNDVISL
YNFKQTHKMDVVASTPCPRYKLAFSQSRIASYLFDGTGYALINNMERRGKFGIVTRFDIA
VRTVANNGILLLMVNGDNVFLLELKNGFLRLMYDFGFSGGPIVMESNSPKLQINDARYHE
VSVIYHYSKKIILLVDKSHVKSMENEKKTLPFSDIYIGGAPSRILLSRPDMSSLVGLKGC
VKGFQFQKKDFNLLEEPGTIGISSGCPEESFMSRKAYFTGESYLGSAAKISPFDAFEGGL
NFRTLQPTGLMFYHSEGSDEFTISLENGAVVLNSRGTRVKSQKKQYNDGVTHFLVASVNN
DKYELVVDDKDKHEKKRPTTAPSASTVKNFYFGGSPSSSMKNFTGCISYAYISRQDRDIE
PEDFQKYTENVQTSLQDCPVKRPPAALLSKQSKDSAKPKPGHTRKVGRDKSNLPQGLLGL
KSDDQEPGETEETPCYLSPRPRATRHAYHYGGTANSRQEFTDIPGSLSERSHFSLSLKTQ
SSFGIIFYASDEAEDNFMALFLAHGKLVYTFNLGQQRVKIKSLEKYNDGAWHNVIFIRDG
NLGRLVIDGLTVLEDRAQDSNVSWHVSSHLYLGGVPPGRAQKNIQRNSAYSFTGCVKNLQ
LNGQWLSSVSQTFGVTPCFEGLSEPGIYFSEEGGYVALDDTFNLGLKFELVVEVRPRVAS
GVLLHVYTAAEEYLTMYIHQKAVVVQVNNGVREFFTQVTPRLGLCDGSWHRVTVIRDANV
VQLDVDSEVNHVVGPLNPSAQSARTPVFIGGAPESLLPEGVATRRAYTGCMRNLTVNESQ
VSFSKAALVIGAVSVGSCPAA
NT seq
5646 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctactagagctctgccctgcctctgccttctactctccatcgtcctctcaggg
atcgtctgcccagcgacttccattggtttacattgggaacagcagtcggtgatgaaagtg
tgtgcaaaaggatatttcctcagtaaccagaaaaaatgcctaccatgtaactgcaaagcc
cattcagaaacttgtgaagatatcacaggtgtttgtatatcatgtcaggaccacaccact
ggggatttctgtgaaatatgtgaggatggatacatgcctgacgtctccacatatggacga
cactcctgccggccgtgcgcctgtcccctctctagcccctccaacaacttcgcagagcat
tgtgacagaagcagtaacatcctacgatgcaagtgcctagagggctatgctggacattac
tgtgagagatgtgctccaggtttctacggcaaccccatggtgatcggtgactcctgtaag
agttgtgactgtaacggtaactcagaccccaaccacatcttcaatgagtgccacaacgtg
accggcttctgtcagaattgctggggggacacggccggagccaactgtgaacggtgtgcc
ccgggtttctacggcgacgccatcagtgccaagaactgcagagcgtgcgagtgcagtaag
tgtggaacagcttcgtgtgatgacaggacagggacgtgtcactgtaagcctggtgtcacc
ggccaactctgtgaccaatgtgaggagggccacacaggtttcaataactgtcagggctgc
cagaggtgtgactgtggacctgccggtctccggcccacctgtcatcctctgacccacagc
tgccagtgccaaccaggggccggaggccgatactgcgagcgttgcctcccagaccactgg
aactacggcccctcagggtgtcaaaaatgtgactgtgctagcagccactgtgacatgcac
actggggagtgtctccctgaagccgccacgatcaatctctgcaacatcagttgtgatgag
tgtatctggcacctgattggtgacctgaggttgtccaataagacgctggaccagatgagg
gtcagtgtgttgaacatctccactggggctgcagccaacgacaggctcaagtactacaac
tacactgcccaacgtctgcagactcagtttgtgaactggaggaataagtcagctctgatg
aggacccagacagggcagctggagggggccagtgctgctctactcttagacatcaaccat
ctggcagagacggagagtgcagtgaagttcttgggggaaagagtggatgaagacacaata
gagagtgtcactctggctgacgagctgaccactaacctcaccaccctcaacgtgctgatt
gaagagatgatcagtgactgggagctgtacagtgtccatcaggacctggacccagagatc
atcagacagaagacagctatggccgagggcatggtggcctggatgaagaaactggacctt
tctccacgagagcccattgccaccgatgagtccaccgaggcccacgacctccttagacgc
atgcgtcaactggataagaacctgatcagtacggacagccgcgtggccccggtacgggag
gtgctctcccgcttcaccaacaagctctctgaggcccaggagatcctccagaaggctgcc
aacactgtccaggagactgaggacatgaacaaagccaacaccgtcaaattccagaggagt
gaggccaagcagcaggagctgatagagaactacaaagctgtgaatgacaccttgcagatg
gctaaagaccttatagtggacactgaaaatactgtgccagagatggatctccttgtgcag
aacgtgactgagtaccacgctgcgatcgatggcgcaagcaagcggctgcaggagaagact
gaggcgctgtccctggcagacagagacctggtccaaagagcccaggaccgcgcagaggac
ctccagagtcaagcggatgagctggagtataatctgaaacgaagtgatgccaatggattt
gtgcagaaggctctggttgcagccaatgtgtacaacaacatagtccagtatatcgaagag
gccaacatcactggactgacaacaatggatttagcaacaagagctaaggatgccagcact
gggatcaacacccagctggggtttctgaagacccagagtgacaacatcttcaaggaatct
gtttcattgcgctctgagcaattcgaggttgaagctgaggttctggacaagattaaatac
attgaggagaccaaggagaccatggaggacaacaccaaaaaactagctgtagtactgaaa
gatatcaagggaattgagccagacagaaccaccaagcgtctggagctcaccaaggaggtt
gctgaaggcaccctgaaccgctcagtggaggtcctggagaccatcacccccatccacgag
aaggtagaggagtgggccatcaacatgaagaaccaagattactctgctgcagccttcgac
cgcgctgtagtctccgctggggaagcagtggagaacctgtctgagctggtccctgagctg
ctggataagctgcgtgtggtggaggagaagaacccagtgaacaatgtgaccacgaacatc
atgaggatcagagagctcatcgcccaggccaggagtgtggccaagaaggtccaagtgtcc
atgaagttcaacggtcagtcgtcggttcaggtgcagccccacaccaacctgaaggacctg
aagacagtgaccaccatcagcctgttcatcagggtggacccagataaggaccctatcgag
gaccgcttcatcttctatctgggagacagaaacggtaggaaggactacatgggtctggca
atcaagaatgacaacctggtgtacgtctacaacctgggaggggaagatgtcgagatctca
cttggttcgaagcctgtcagccaatggcctccagtctttaacctcatcaaagtggagagg
ctgggcagacatggcaaagtgttcctgaccgtacccagtcagacatccactgacgagcag
aaattcattcagaagggagaagcctttggcaccgactccctgttcgatctggaccctgaa
gacactgtcttcttcatgggtggcgtccccgctgatgtcaggcttccacctgcactcagc
ctagctcctttcgtgggctgcatcgagttggcctctttgaataacgatgtcatcagtctg
tacaatttcaaacagacccacaagatggatgtagttgcttcaacaccttgtcccaggtat
aagctggcattctcacaaagtcgtatcgccagctacctgtttgacggaactggatatgcc
ctcatcaacaacatggagaggaggggtaaatttggcattgtcacccggtttgacattgct
gttcggacagtagcaaacaacggcatcctgttactcatggtcaatggggacaacgtcttc
ctgttagagttgaagaatggcttcctacgtctcatgtatgactttggcttcagtggaggc
ccaatcgtcatggagagtaactcacccaaactacagatcaatgacgcaagataccatgag
gtgtcagtgatctatcattactccaagaagatcattctattggtggacaagagtcacgtg
aagtccatggagaacgagaaaaaaactctgcccttctccgatatctacataggaggagcc
ccctcgcgcattctcctctccaggcctgatatgtcctccctggtggggctgaaggggtgt
gtgaagggcttccagttccagaagaaagactttaacctcctggaagaacctggcactatt
ggcatcagcagcggttgtcctgaggagtcttttatgtcccgtaaagcctacttcactgga
gagagctacctggggtctgcggcaaagatatctccttttgacgccttcgagggaggcctt
aacttcagaacactgcagcctactggtctcatgttctaccacagcgaagggtctgatgag
tttaccatctcccttgagaatggagcagtggtattgaactccagaggcaccagggtcaaa
tcacagaagaagcagtacaatgatggagtgacccatttcctggtagcttcagtgaataat
gacaaatatgagctggtggtggatgacaaagacaagcatgagaagaaacgtccgactact
gccccctcagcctccacagtgaagaacttctacttcggaggctctcccagcagcagcatg
aagaacttcactggctgcatcagctatgcctacatcagcagacaagacagagacattgag
ccagaggactttcagaagtacactgagaatgtccagacctctctgcaagactgccctgtg
aagcgaccgcccgctgccctgctctcaaagcaaagcaaggactctgccaaacccaagccg
ggccatacaaggaaggtgggcagagataagtccaacctcccacaaggcctgttgggactg
aagagtgatgaccaggagccaggagagacagaggagacgccctgctacctgtcccccagg
ccccgtgccacccgccacgcctaccactacgggggcactgccaacagtaggcaggagttc
acagacatcccagggtccctctctgagaggtctcacttctccctgtccctgaagacccag
tcctcctttggcataatcttttatgcatcagatgaggcggaggacaactttatggctctc
ttcctggcccatggcaagctggtgtacacattcaacctgggtcagcagagggtcaagatc
aagagcctggagaagtacaacgatggagcatggcacaatgttatttttatccgtgatggg
aatctaggccgattagtcattgatgggctgacagtgctggaggacagagctcaggactcc
aacgtttcctggcacgtcagcagccacctctacttgggaggggtgcccccagggagggcc
cagaagaacatacagagaaactctgcgtacagcttcactggctgtgtgaagaacctccag
ctgaacggccaatggctgtcctccgtgtcccagaccttcggggtgacgccgtgcttcgag
ggactctccgagccggggatatacttctccgaagaggggggatatgtcgccttggatgac
acgttcaacctggggctgaagtttgagctggtggtagaggtgcgcccccgtgtggcgtca
ggggtgctactgcacgtgtacacagcagccgaggagtacctcaccatgtatatccatcaa
aaagcggtggtggtgcaggtgaacaatggagttcgtgagttcttcactcaggtcactcct
agactaggcctgtgtgatgggagctggcacagggtcacagtgatccgagatgccaatgtt
gtccagctggatgtggactcagaggtcaatcatgtggtgggaccactcaaccccagcgcc
cagagtgccaggacccctgtgttcattggtggagcaccagaatctcttcttccagagggc
gttgcgactaggagggcctacacaggctgtatgaggaacctgactgtgaacgagagccaa
gtgagcttcagcaaagctgccctggtcatcggggccgtcagtgtgggctcctgtccagct
gcctaa
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