Coregonus clupeaformis (lake whitefish): 121552138
Help
Entry
121552138 CDS
T08357
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog isoform X1
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04140
Autophagy - animal
cclu04148
Efferocytosis
cclu05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121552138
04148 Efferocytosis
121552138
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
121552138
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121552138
Membrane trafficking [BR:
cclu04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
121552138
Hops complex
121552138
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
TPR_Vps41
zf-RING_11
zf-RING_16
zf-RING_2
zf-RING_UBOX
DUF1664
DUF5600
zf_RING_Vps8
zf-ANAPC11
DUF4446
zf-rbx1
zf-C3HC4_2
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
121552138
NCBI-ProteinID:
XP_041720802
LinkDB
All DBs
Position
36:complement(4631687..4648452)
Genome browser
AA seq
1002 aa
AA seq
DB search
MSSILDEYEDSQNSRHPVQHSSRLSAANIGITHSGFVNVRLEEEKPIFNKQRIDFSPPEK
INHFAVCNNQLCMSLGKDTLLRIDLAKPDQPNQIELGRKDDSRVHKLFLDPTGSHLVISL
STSECLYLNRNTQKVRSLSRWRGHLIESLGWNKLLGTETNTGPILVGTSQGIIFEAEISA
SEGSLFNTNPDQYFKQVHSLEEDGKPAPVCCIEVERGLESKVFIIATTRKRLFQFVGRVA
DGSEQQGFSSIFSQNQELLPSFQEFPFNMGYSEITFYTSKLRSCPKAFAWMMGNGVLYGQ
LDYVKLDSLLSDVQVWDYTPDIDFSFNKPISIVLTQFHFLLLLPDRVKAICTLNGQVVCE
DVFPDKFGTLKKMIKDPAGGLVWIYTEKAVFRYHIQREARDVWQMYMSMNKFDLAKEYCR
DRPECMDMVLAKEYCRDRPECMDMLLAKEAEHCFQNKRYLESAECYALTQNYFEEIALKF
IEAKQEEALKEFLLKKLNNLKQSEKTQITLLVTWLTELYLNRLGLLQSDEGKHGVFQETR
DEFRKFLSSSKHKECLYNNRTTIYDLLASHGNVDDMVYFSVIMKDYERVISHHCQHDDYS
AALEVLSKHCDEKLFYKFSPILMQHIPKKVVDAWIQMGSRLEPKKLIPALVNYSQMGSTQ
QIHETIRYMEFCVYQLTVTEEAIHNYLLSVYAKYKPESLLWYLEQAGTHASDIHYDLKYA
LRLCAEHGYLQACVLVYKIMGLYEEAVDLALQVDVDLAKSCADLPEDDEELRKKLWLKIA
RHVVQEEKDVKKAMNCLSSCNLLKIEDILPFFPDFVTIDHFKEAICSSLEEYNQHIDELK
QEMEEATESAKRIREDIQEMRNKYGVVESQEKCAACDFPLLNRPFYLFLCGHMFHYDCLF
LEVSPHLSTYKQTKLDEMQKKLAAATQTSKSRHRPAPKEKEEGGDTASLGKGSAGVSREQ
IKSDIDDIIASECVYCGELMIKSIDKPFIDPQKFEEEKSSWL
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctatcctggatgaatacgaggactcgcagaacagcagacaccctgtgcaacac
agtagccgcctgtctgctgccaacatcggcataacacactccgggttcgtgaatgtgaga
ctggaggaggagaagccgatattcaacaaacagaggattgatttctcacccccagagaaa
atcaaccacttcgctgtctgcaacaatcagctatgcatgagtttagggaaggacactctt
ctgaggattgaccttgccaagccagaccagcccaaccagatagaactggggaggaaggat
gacagcagagtacacaagctcttcctggaccccacagggtcccacctggtgatttctctc
agtaccagtgagtgtctatatctgaacaggaacacccagaaggtgaggtctctgtcccgc
tggagaggacacctcatagagagtctaggctggaacaagcttctggggaccgagaccaac
actgggcccatcctagtgggaaccagccagggaatcatcttcgaggctgagatctctgct
tcagagggaagcctgtttaacaccaaccctgaccagtacttcaaacaggtccattccctg
gaggaggatgggaagccagctccagtatgctgtatagaggtggagcgaggtctggagtct
aaagtcttcatcatcgccaccaccaggaagcgcctgttccagttcgtaggtcgcgtggca
gacgggtcagagcagcaaggcttcagctccatcttctcacagaaccaggagctgctgccc
agcttccaggagtttccctttaacatgggctacagtgagatcaccttctacacctccaag
ctcaggtcctgccccaaggccttcgcatggatgatgggtaacggagttctctacggtcag
ctggactacgtcaagctggactcgctgctcagtgatgtgcaggtgtgggattacacccca
gacatagacttcagtttcaacaagcccatctccatcgtgttgactcagttccactttcta
ctcctcctccctgaccgcgtcaaggccatctgcacactcaacggacaggtggtgtgcgag
gacgtgttccctgataagtttggcaccctgaagaagatgatcaaggacccagcaggaggc
ctggtgtggatctacactgagaaggccgtctttagataccacatccagagagaagccagg
gatgtgtggcagatgtacatgagtatgaacaagtttgacctggctaaggagtactgccgg
gaccggccagagtgcatggacatggtcctggctaaggagtactgccgggaccggccagag
tgcatggacatgctcctggctaaggaggcagagcactgcttccagaacaaacgctacctg
gagagtgccgagtgctacgctctgacccagaactactttgaggagatcgcgttgaagttc
atcgaggcgaaacaggaagaagctctgaaagagttccttctaaagaaactcaacaacctg
aaacagagtgagaagacccagatcaccttactggtcacctggctgactgagctctacctg
aaccgcctggggcttctgcaatcagacgaggggaaacatggggtgttccaggagacgcgt
gatgagttccggaagttcctcagtagctccaaacacaaggagtgtctctataacaaccgt
acgaccatctatgacctgcttgctagccatggcaacgtggacgacatggtctacttctct
gtcatcatgaaggactatgagagggtgatctcccaccactgtcagcatgatgactatagc
gccgccctggaggtgctctctaagcactgcgacgaaaagctcttctataagttctccccc
atcctcatgcaacacatacctaagaaggtggtggatgcctggatccagatgggcagcagg
ctggaacctaagaagctgatcccagccctggtcaactacagtcagatgggttctacacaa
cagatccacgagaccatccgctacatggagttctgcgtctaccagctcacggtgacagaa
gaggccatacacaactacctgctgtccgtctacgccaagtacaaacctgagagtctcctg
tggtacctggaacaggctgggacccacgcttcagacatccactatgatttaaagtatgcc
ctgaggctgtgtgctgaacatggctacctccaggcctgtgttctggtctataagatcatg
gggctgtatgaggaagctgtcgatctggctctacaagtggatgtggacttggccaagtcg
tgtgctgacctgcctgaggatgatgaggagttgaggaagaagttgtggctgaagatcgcc
cgtcacgtggtgcaggaggagaaggatgtgaagaaggccatgaactgtctgtccagctgt
aacctgttgaagatagaagacatactgcctttcttcccagacttcgtcaccatagaccac
ttcaaggaggctatctgcagctctttagaggagtacaaccagcacatagacgagctgaag
caggagatggaggaggcgacggagagcgccaagcggatcagagaggacatccaggagatg
aggaacaagtacggggtggtggagagccaggagaaatgcgctgcctgcgacttccccctc
ctcaacagacccttctacctgttcctctgtggtcacatgttccactacgactgccttttc
ctggaggtgagccctcacctgtccacctacaagcagactaaactagatgagatgcagaag
aagctggctgcagccactcagacctccaagtcccgccaccgccccgcccccaaggagaag
gaggaggggggtgacaccgccagcctggggaaaggaagcgccggagtcagccgagagcag
atcaagtccgacatcgatgacatcatcgcctccgagtgtgtgtactgcggtgagctgatg
atcaagtcaatcgacaagccatttattgatccacagaagtttgaggaggagaagtccagc
tggctctga
DBGET
integrated database retrieval system
