Coregonus clupeaformis (lake whitefish): 121552222
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Entry
121552222 CDS
T08357
Symbol
stxbp5a
Name
(RefSeq) syntaxin-binding protein 5a isoform X1
KO
K08518
syntaxin-binding protein 5
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121552222 (stxbp5a)
Membrane trafficking [BR:
cclu04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
121552222 (stxbp5a)
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
121552222 (stxbp5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LLGL
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
ANAPC4_WD40
WD40
Beta-prop_IFT140_1st
WD40_Prp19
Beta-prop_HPS5
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_NUP159_NUP214
KNTC1_N
Lgl_C
Beta-prop_EML
Beta-prop_Vps41
Beta-prop_VPS8
CFAP43_N
VPS8_N
Beta-prop_WDR35_TULP_N
Synaptobrevin
WD40_like
Beta-prop_IFT122_2nd
Motif
Other DBs
NCBI-GeneID:
121552222
NCBI-ProteinID:
XP_041720901
LinkDB
All DBs
Position
36:2347024..2498929
Genome browser
AA seq
1149 aa
AA seq
DB search
MKKFNIRKVLDGLKEQASSSASSGQSGTQENNLMQETLQSENFQLCKTVRHGFPYQPSSM
AHDPVQKILAIGTQSGALRLFGRPGVECYCQHESGAAVISLQFLINEGALVSALADDSVH
LWNLRQKRPAILHSLKFNRERITFVHLPFQSKWLYIGTEKGNIHIVNVESFTLSGYVIMW
NKAIELSSKAHPGPVVHISDNPMDEGKLIIGYESGIVVLWDLKSKKADYRYTYDEAIHSV
AWHHEGKQFICSHSDGTLTIWNIKGQGKPFQTITPHGKQPKDGKKPEPCKPILKVEYKTT
RLGDPFMILSGGLSYDTVGRRPCLTVMHGKSTAVLEMDYPIVDFLTLCETPYPNDFQEPY
AVVVLLEKDLVVIDLAQNGYPIFENPYPLTIHESPVTCCEYFADCPVDLIPALYSVGSRQ
KRQGYSKKEWPISGGNWGLGTQSYPEIIITGHADGTVKFWDASAIMLQVLYKLKTAKVFE
KSRNNKEDKQNTEIVDEDPFAIQIMAWCPESRMLCVAGVSANLIIYRFSKQEITTEVVQL
LEVRLQYEVNDMESPPEGGGGGDRDLPTPGAASPSPQTTGPPTHPSTSSNSSDGVRDNVP
CLKVRSTPLKQSPGYQVELVVQLVWVSGEPPQQITSLALNSSYGLIVFGNSNGLAVVDYL
QKTVLLNLGTVELYGSNDPYQRQPRSPRKTRQPSGGNGLCDINESSASEDRCKSPTSVLA
SNHQQFYNGGGGRGAKMSRKLSLPTELKPDLVLLSVCPPRGANPLDHRDNSFSRSRSSSV
TSIDKEAREAITSFHFCETFARKGDSTITPCLYVGTSLGTVLAVALNLPPAGEQRLLQPV
IVLPSGTLGRLKGSILRMAFLDNTGTFLPPAFEPWYEPNAVGADSEERDKGRKRRPVSVS
PSTSQELQESQYAVVCSEKQAKVIALPSQNCIFKHSITETSFVLRADVVQMNIGNCVACF
CANGHIMTLSLPGLRPLLDVNYLPLTDMRIARTFCFTNLGQAMYLTSPTEIQRITYSQET
CENLQEMLGELFTPVETPEAPNRGFFKGLFGGGATSLDREELFGETQAGKASRGLAQHIP
GPQGLEGMKGAASGVVADLARARIALDERGQKLGELDERTAAMLASADSFGKHAHDMMLK
CKDKKWYQF
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagtttaacatcaggaaggtactggacggcctaaaggagcaggcgtcttcctcg
gcttcgtctggccagtcgggcacccaggagaacaatttgatgcaggagacccttcagtcc
gagaattttcaactctgcaagactgtccgtcatggcttcccctatcagccgtcgtccatg
gcccatgacccagtccagaagatcctggccattgggacccagagtggggccctcagactg
tttggtcgtccaggtgttgagtgctactgtcaacatgagagtggagccgctgtcatctcg
ctgcagtttctcatcaacgagggggcgctggtgagtgctctggcagacgacagcgtgcac
ctctggaacctgaggcagaagaggcccgccatcctccactcactcaagttcaacagagag
aggatcacgttcgtccacctgcccttccagagtaaatggctgtacatcggcacagagaaa
ggaaacatccacatcgtcaacgtggagtccttcacactctcaggctacgtcattatgtgg
aacaaagccatcgaactatcctccaaggcccacccaggtcctgtggtccacataagtgac
aaccccatggatgagggaaagcttataattggatatgagtctgggatcgtggtcctgtgg
gatctgaaatcaaagaaggcagactaccgctacacttatgacgaggcgatccactcggtt
gcctggcaccatgagggcaagcagttcatctgtagtcactcagacggaacgctcaccata
tggaacattaagggccagggcaagccatttcagacaatcaccccacacggaaaacagccc
aaggatggaaagaagccagagccttgcaaacccattctcaaagtggagtacaagaccact
agactgggagacccattcatgatcctgtctggaggtctgtcttatgacacggtgggtcgg
cggccatgtctgacggtgatgcatgggaagagtacagccgtgctggaaatggattacccc
atcgtagacttcctcacgctctgtgagacgccataccctaacgattttcaggaaccttat
gctgtagtggtccttctagaaaaggatttagtggtgatcgaccttgcacaaaatggttac
cccatattcgagaacccctatccactgaccatccacgagtctcctgtgacctgctgtgag
tactttgctgactgccctgtggacctcatacccgcactttactctgttggctccagacag
aaacgacagggctacagcaaaaaggagtggcccatcagtggtggtaactggggccttggc
acacagagctaccctgagatcatcatcactgggcatgctgatgggactgtgaagttttgg
gatgcttctgcaataatgctccaggtactgtacaagctgaagacggccaaggtgtttgag
aagagcaggaataataaggaggacaagcagaacacagagattgtggatgaggacccgttt
gccatccagatcatggcctggtgtcctgagagcaggatgctgtgtgtggccggggtgtct
gccaacctcatcatataccgcttcagcaagcaggagatcaccaccgaggttgtacagctg
ttggaggtgcgtttgcagtacgaggtgaatgacatggagtcccctccagaggggggaggc
gggggggaccgtgacctgcccacccccggagcagcctcacccagcccccagaccaccgga
cccccgacacacccctccaccagcagcaactcctctgacggggtccgagacaacgtaccc
tgccttaaggtgcgtagtacccctctgaagcagtctccagggtaccaggtagagttggtg
gtgcagctggtgtgggtgagtggagagcccccccaacagatcaccagcctggccctcaac
tcctcctacggcctgattgtgtttgggaacagtaatggtctggcggtggtggactacctc
cagaagacagtgttgttgaacctggggacagtggagctgtatgggtctaacgatccctat
cagagacagcctcgctctccacgcaagacacgccagccttccggaggtaatggtctgtgt
gacatcaacgagagttctgcctcggaggaccgctgcaaatcccccacttcagtgttggcg
tcaaaccatcagcaattctacaatggaggtgggggtagaggagcaaagatgtctcggaaa
ttaagcttgcctactgagctaaagccagacttggtcctcctgtctgtatgtcctccacgg
ggtgccaacccactagaccaccgggacaactccttcagccgttcacgctcctcctccgtc
acctccattgacaaggaggcacgcgaggccatcacctccttccacttctgtgagacgttc
gcccggaagggggacagcaccatcacaccttgcctgtacgtgggcacctccctgggcaca
gtgctggctgtggccctcaacctgccccctgctggggaacagagactactgcagcccgtc
atcgtcttgcctagcggtaccctggggcgtctgaagggcagtatcctgaggatggccttc
ctggacaacacgggcaccttcctcccccctgccttcgagccgtggtacgagcccaacgct
gtgggcgccgacagtgaggagcgagacaaaggccgtaaacgccgcccggtctctgtgtcg
ccctccacctcccaggagctgcaggagagccagtatgcggtggtgtgctctgagaaacag
gctaaggtcatagcactgccctcccagaactgcatattcaaacacagcatcacagagaca
tcgttcgtcctgagggctgacgtggtccagatgaacatagggaactgtgtggcttgcttc
tgtgctaacggacacatcatgaccctcagtctgccggggctcagaccgttgctggatgta
aactacctgccgctgacagacatgcggatagcccggaccttctgcttcaccaacctgggc
caggccatgtacctcacctcccccactgagatacagaggatcacatacagccaggagacc
tgcgagaacctgcaggagatgctgggagaattgttcacaccagtggagaccccggaggct
cccaaccgaggattcttcaagggcctttttgggggaggagcaacttccctggacagagag
gaactatttggtgagacgcaggcgggtaaagcgtcccgtggccttgcccagcacatcccg
ggtcctcagggcctggagggaatgaagggggcagcctcgggcgtggtggcggacctggcg
cgtgcccggatagcgctggacgagagagggcagaaattgggcgagctggacgagaggacg
gccgccatgctggccagcgccgactcctttggcaaacacgcccacgacatgatgctgaag
tgcaaagacaagaagtggtaccagttctga
DBGET
integrated database retrieval system
