Coregonus clupeaformis (lake whitefish): 121552754
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Entry
121552754 CDS
T08357
Name
(RefSeq) transcriptional repressor CTCF-like
KO
K23195
transcriptional repressor CTCF
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121552754
03036 Chromosome and associated proteins [BR:
cclu03036
]
121552754
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
121552754
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
121552754
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_7th_ZNF462
zf-C2H2_jaz
zf-C2H2_REST
Zf-C2H2_ZNF451
zf-C2H2_6
zf-C2HE
BNIP2
zf-C2H2_15
LIM
A24_N_bact
DUF7479
Zn_ribbon_DUF2089
DUF7128
C1_1
Zn_ribbon_FGT1_2
Motif
Other DBs
NCBI-GeneID:
121552754
NCBI-ProteinID:
XP_041721717
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All DBs
Position
36:34688643..34690327
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AA seq
476 aa
AA seq
DB search
MKSHTDERPHKCHLCGRAFRTVTLLRNHLNTHTGTRPHKCQDCDMAFVTSGELVRHRHYK
HTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGE
KPYECYIRHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLHKQHSFIE
QGRKCRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDYCCRQERHMLMHRRTHTGEKPYS
CSQCEKTFRQKQLLDMHFRRYHDPNFVPTAFVCTKCGKTFTRRNTMARHAENCNGDPGEG
ENGTPPKRGRGGRKRKMRSRKDDDDDDSEDNADPELDDIDEEDEEAEAALLEDEEEEEEE
MELEQAPPTKPIPAPVEPPVKRKRGRPPKPASPAKASKATPKGKAAAAAAIIQVEDENTG
AMENIIVKNEPEAEQAAIEVVVEQSEEAEAGVALPVAEVASNGDLTPEMILSMMDR
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgaagagccatacggacgagaggccccacaagtgccatctgtgtggaagggccttcagg
accgttaccctgctgaggaaccacctcaacacacacacaggtaccagaccacacaagtgt
caagattgtgacatggcctttgtgaccagcggagagctggtccgacatcgtcactacaag
cacactcatgagaaacccttcaagtgctccatgtgtgactatgccagtgtggaggtgagc
aagctgaagcggcacatccgttcccacacaggggagcgtccgttccagtgcagtctgtgc
agctacgccagcagagacacctacaagctgaagagacacatgaggacacactcgggagag
aagccatacgaatgctacatccgccacgcccgtttcacccagagtggaaccatgaagatg
cacatcctgcagaagcacacagagaacgtggccaagttccactgcccccactgtgacaca
gttatcgcccgcaagagtgacctgggtgtccatctgcataagcagcactcgttcattgag
cagggcaggaaatgccgttactgtgatgctgtgttccacgagcgctacgctctcatccag
caccagaagtcccacaagaatgagaaacgcttcaagtgtgaccagtgtgactactgctgc
agacaagagcgccacatgctgatgcacaggcgcacgcacacaggagagaagccttactcc
tgtagccagtgcgagaagaccttccgtcagaagcagctcctcgacatgcacttccggcgc
taccatgaccccaactttgtgccgactgcctttgtgtgcacaaagtgtggcaagaccttc
acccgcaggaacaccatggccagacatgcagagaactgtaacggggatcctggtgaagga
gagaatggaaccccacccaagagaggacgaggtgggaggaagaggaagatgcgctcaagg
aaggacgatgatgacgacgacagtgaggacaatgctgatcctgagttggatgacattgat
gaagaggatgaggaggctgaggcggcactgctggaggacgaagaagaggaggaggaggag
atggagttggagcaggctccacccaccaagcctatccctgcccctgtggagcctcccgtg
aagaggaaacgcggtagaccccccaaacccgcctcacctgccaaagctagcaaggctacc
cctaagggcaaggctgctgcagcagcagccatcatccaggtggaggatgagaatacaggt
gccatggagaacatcatagtgaagaatgagccagaggctgagcaggctgccatagaggtg
gtggttgagcagtcagaggaggcagaggcaggggtggcgctgcctgtagcagaggttgcg
tccaacggagatctcacccctgagatgatcctcagcatgatggaccggtga
DBGET
integrated database retrieval system
