Coregonus clupeaformis (lake whitefish): 121552863
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Entry
121552863 CDS
T08357
Symbol
xrn2
Name
(RefSeq) 5'-3' exoribonuclease 2 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03008
Ribosome biogenesis in eukaryotes
cclu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121552863 (xrn2)
09123 Folding, sorting and degradation
03018 RNA degradation
121552863 (xrn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121552863 (xrn2)
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121552863 (xrn2)
03009 Ribosome biogenesis [BR:
cclu03009
]
121552863 (xrn2)
03016 Transfer RNA biogenesis [BR:
cclu03016
]
121552863 (xrn2)
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121552863 (xrn2)
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
121552863 (xrn2)
Ribosome biogenesis [BR:
cclu03009
]
Eukaryotic type
Pre-60S particles
RNases
121552863 (xrn2)
Transfer RNA biogenesis [BR:
cclu03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
121552863 (xrn2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
121552863
NCBI-ProteinID:
XP_041721880
LinkDB
All DBs
Position
36:complement(35266276..35313957)
Genome browser
AA seq
957 aa
AA seq
DB search
MGVPAFFRWLSRKYSTIVVHCTEERSKECNGVRIPVDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKAAPKNEDEMMVAIFEYMDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGVELVEEKSRIREEILGRGGYLPPVEIKERFDSNCITPGTEFMDNLAKCLRYYVAE
RLSNDPGWRNITVILSDASVPGEGEHKIMDYIRRQRAQPHHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNQPRPCAMCGQKGHEIKDCQGVAREKQGEHDEFADTMPASEQE
FIFIRLCVLREYLERELTMASLPFPFDFERTVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVGIYKDVVHKTGGYITENGFVNLESVELIMQAIGVAEDNIFKKRKEDDEGFKRRNKE
KKKRMKAQQQGPAYMTGGQFAPQALGGRGRPGVVQNARHQAFDMRMQGRDQHNKDAAQSL
KAMMKNGGQAGSSDGQDGRGMKRKAEDSDSEPEPEDNVRLWEDGWKQRYYKTKFDVDATD
DDFRKKVVKSYVEGLCWVLRYYYQGCASWKWYFPFHYAPFASDFKDIKGMFTDFELGTKP
FKPLEQLMGVFPAASGNFLPETWRSLMSNPESSIIDFYPDDFAIDLNGKKYAWQGVALLP
FVDERRLRAALAEVYPNLSPEENKRNSLGSDMLFVGISHPICDFIQELYRGESHEGTEMP
AELCHGIQGTLNLDEDPIIPDKPVESPIPMLRDIAQNSAIGVKYKDPQFGETFVFKAVIL
PGAKMPAKVLKPGDWERGNRGRGNWRPQLGFNSNRQQVHLDQSSFRALGHSMNRQQQGGG
QYSNAPPPGNYHQGNYSRPHSGGGGHLPPFPHSRQQGLLGASTPYNYQQQYPRQQYGGGH
GWDRSTQRGGHGGGQGQGGYHQQRGQDDRRGDRGGQPGYNSGRNYHLPPPERKYNWS
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccgcattttttcgttggttgagtcggaaatattctacgattgttgttcat
tgtactgaggagaggtccaaggaatgtaatggcgtacggattcctgttgataccagcaaa
ccgaatccaaatgaagtggagtttgacaatttgtacttggacatgaatgggatcattcac
ccctgtacacatcctgaagacaaggctgcgcccaaaaatgaagatgaaatgatggttgcc
atctttgaatatatggatcggctcttcaatattgtgcgacccagaagggttctctacatg
gctattgatggagtggcccctcgtgccaaaatgaaccagcagcgctccaggcgattccgt
gcctccaaggaaggagtggaactggttgaggagaaatcccgcatccgagaggagatcctc
gggagaggagggtatcttccaccggttgaaatcaaggagagatttgacagcaactgtatc
accccaggcacagagttcatggacaaccttgcaaagtgtctccgttactacgttgcagag
agactcagtaatgaccctggatggcgtaacattacagtaatcttgtctgatgccagtgtc
cctggtgaaggggagcataagatcatggactatatcagacgacagagagctcagccccac
catgaccccaacacacaccactgtctttgtggagctgacgctgacctgatcatgctgggt
cttgccactcacgagcccaatttcaccatcatcagagaggagttcaagcctaaccagcct
aggccctgtgctatgtgtggacagaaaggccatgagatcaaggactgccagggagtggcc
agggagaaacagggagagcatgatgagtttgcagacactatgccggcttctgaacaggag
ttcatattcatcaggctgtgcgttttgcgcgagtacctggagcgagagctgacaatggcc
agtctgccctttccatttgactttgagaggactgtcgacgactgggtcttcatgtgcttc
ttcgttggcaatgatttcctgcctcacttaccgtccttagagattagagagggtgcgata
gatcgactggtgggcatctacaaagacgtcgtgcacaagactgggggctacatcacagag
aatggttttgtcaacttggagagtgttgagttgatcatgcaggcaatcggcgtggctgag
gacaacatcttcaagaagcgcaaagaggacgatgaggggttcaagcgaaggaacaaggag
aaaaagaagaggatgaaggctcagcagcaaggcccagcctacatgaccggtggtcagttt
gccccccaggcccttggtggcagaggcagacctggggttgtccagaacgcccggcaccaa
gccttcgacatgaggatgcagggcagggaccagcacaacaaggatgctgcgcaatcacta
aaagccatgatgaagaatggtggccaggcagggagcagtgacgggcaggacggccggggt
atgaagcggaaagctgaggacagcgacagcgagccagagcctgaggataatgtcaggttg
tgggaggatggctggaagcaaagatactacaagaccaagtttgacgttgacgcgactgac
gatgacttccgcaaaaaggtggtgaagtcctacgtggagggtctctgctgggtactccga
tactactaccaggggtgcgcgtcctggaagtggtacttcccgttccactacgccccattc
gcctcggacttcaaagacatcaaaggcatgttcaccgacttcgagcttgggaccaagccg
ttcaagcccctggaacagctgatgggtgttttccctgccgccagtggaaacttcctgcct
gaaacatggcggtcactcatgagcaacccagaatcctccatcattgacttctaccctgat
gactttgccatcgacttgaatggaaagaagtacgcttggcagggtgttgcattgctgccc
ttcgtggatgagcgtaggctgagggcagccctggctgaagtctacccaaacctctctcca
gaggaaaacaagaggaacagccttggcagtgatatgctgtttgttgggatatctcatcct
atctgtgacttcatccaggaactgtaccgtggagaatctcacgagggcactgagatgccg
gcagaactatgccatggaattcaaggtacattaaatcttgacgaagaccctatcatacca
gataagccagtggagtcgcctatacccatgctgcgggacattgcacagaacagtgccatt
ggagtgaaatataaggacccacagtttggagagacctttgtgttcaaggctgtcattctt
cctggagctaagatgcctgcgaaggtgctgaagcctggggactgggagagaggcaaccgt
ggtaggggtaactggaggccccaactgggtttcaactcaaacaggcagcaggtccacctg
gatcagtcaagcttcagggctctgggtcacagcatgaacagacagcagcagggaggtggg
cagtacagcaacgctccgccccctggcaactaccaccaggggaactacagcaggccccac
agcggcggtggtggtcacctcccacccttcccacattccaggcagcagggtcttctaggg
gcatctaccccatacaactatcagcagcaatatccaaggcagcagtatggtggtgggcat
ggctgggaccggtcgacgcagagaggaggccacggaggggggcagggccagggtggctac
caccagcagcgtggtcaggacgaccgcagaggagaccgtggaggacaaccgggatacaac
tctggacggaattaccacttgccacccccagaaagaaaatacaattggagttaa
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