Coregonus clupeaformis (lake whitefish): 121553068
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Entry
121553068 CDS
T08357
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1 isoform X1
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121553068
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121553068
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121553068
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
121553068
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
ANCHR-like_BBOX
zf-B_box
fn3
zf-RING_UBOX
RING_XB3-XBAT31
zf-C3HC4_4
PRY
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-C3HC4_3
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
121553068
NCBI-ProteinID:
XP_041722032
LinkDB
All DBs
Position
4:13322746..13384618
Genome browser
AA seq
691 aa
AA seq
DB search
METLESELTCPICLELFEDPLLLPCAHSLCFNCAHRILVSHCTPNEPVQSISAFQCPTCR
YVITLSQRGLEGLKRNVTLQNIIDRFQKASVSGPNSPSETRRERAALDNTAMTSPNERVQ
CQFCEQDPPQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPMPDCHLRGLMCLEH
EDEKVNMYCVTDEQLICALCKLVGRHRDHQVAALSDRYEKLKRTPGCYLSERIEQEEAGQ
VISTQALDSNLSNLIKRNNELETLMGKLIQTCQHVECNASRQENKLLEECDLLIDIIQQR
RQIIATKIKEGKAIRLRKLAQQIASCKQIIERSSSLITQADHTLKETDHARFLQTAKSIC
ERVSMATASSQILIPEINLNDTFDTFALDFTREKKMLESLDYLTAPNPPIIRAELCTASN
DTITVHWTSDDEFCVVSYELQYAIFTGQANVVSLCNSADSWMIVPNIKQNHYTVHGLQCG
TKYVFIVKALNQAGSRSSEPWKLKTNSQPFKLDPKSAHKKLKVSHDNLTVERDETSSKKS
HTQDRFTSQGSYGVTGNVYIDSGRHYWEALIGGSTWFAVGVAYKSAPKHEWIGKNSASWV
LSRCNNSWVVRHNSKEMPIEPSPHLRRVGVLLDYDAGSLAFYDGAGSQHLYTFDIAFAQP
VCPVFNVWNRCLTVLTGLPIPDHLEGTDCRD
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggaaacactggagtcggagctgacctgcccaatttgtctggagctcttcgaggaccca
ctgctcttgccctgcgctcacagcctgtgtttcaactgtgcccaccgcatcctagtctcc
cactgcacccccaacgagcctgtgcagtccatcagcgcctttcagtgcccaacctgtcgc
tatgtcatcaccctcagccagaggggcctagaaggactgaagcgtaacgtcactctgcag
aacatcatcgaccgcttccagaaggcttccgtgagcgggcccaactcccccagtgagact
cgccgcgagcgggccgccctagacaacacggccatgacctcccccaatgagagggtgcag
tgccagttctgtgagcaggaccctccccaagacgctgtcaagacctgtgtcacctgcgag
gtgtcctactgcgacgagtgcctgaaggccacccaccccaataagaagcccttcactggc
catcgtctgatcgagcccatgccggactgccacctcaggggactcatgtgtctggagcac
gaggacgagaaggtgaacatgtactgtgtcacagatgaacagttgatctgtgccttgtgc
aaactggtcggtcggcatcgggaccaccaagtagcagcactcagcgaccgctacgagaaa
ctgaagagaactccaggctgctatctcagtgagaggattgaacaggaggaagcaggccag
gtgatatctacgcaagccttggactccaacctcagcaatctaatcaagaggaacaatgag
ttggaaactctgatgggcaagttgatccagacttgccaacatgtggagtgtaatgcatca
agacaagagaacaagctccttgaagaatgtgacctcctgatcgacatcatacagcagaga
aggcagatcatagccaccaagataaaggagggcaaggctatacggctgcgaaagctagcc
cagcagatcgccagctgcaagcagatcattgagagatcgtcgtccctcatcactcaggct
gatcacaccctcaaggagacagaccacgcccgcttcctgcaaacagccaaaagcatctgt
gaaagagtgtctatggcaacagcatcctctcagatcctgattccagagatcaacctaaat
gacacctttgatacgtttgcgttggacttcacaagggaaaagaaaatgctggaaagcttg
gattacctcacagcaccaaatcccccaataatccgggcggaattatgtacagcatcgaac
gacaccattactgttcactggacgtcagatgacgagttctgtgtcgtctcctatgaactt
cagtatgccatcttcactggacaagccaatgttgtcagtttgtgtaactcggctgatagc
tggatgattgtgcccaacatcaagcagaaccactacacagtgcatggactccagtgtggc
accaagtacgtgttcatcgtcaaggccctcaatcaggcagggagtcgcagcagtgagcct
tggaaactcaagaccaacagtcagccattcaagttggacccaaagtctgctcacaagaag
ctgaaggtctcccatgacaacctgacagtggagcgagacgagacgtcgtccaagaagagt
cacactcaggaccgcttcactagccagggcagctacggcgtcacagggaatgtgtacatt
gacagcgggcgccactactgggaagccttgataggagggagcacatggtttgctgtgggc
gttgcttacaagtcagcaccgaaacacgagtggattggcaagaactcggcctcgtgggta
ctgtctcgctgcaacaactcctgggtagtacgtcacaacagcaaggagatgcccatcgaa
ccgtctccccacctgcgtcgtgtgggggtgttgctggactacgatgctggctccctggcc
ttctacgatggtgccggctcacagcacctgtacacattcgacatcgccttcgctcagcca
gtctgtcctgtgttcaacgtgtggaacaggtgtctgaccgtcctcacagggctgcccatc
ccagaccacctagaggggacagactgccgggattaa
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