Coregonus clupeaformis (lake whitefish): 121553336
Help
Entry
121553336 CDS
T08357
Name
(RefSeq) VPS10 domain-containing receptor SorCS3 isoform X1
KO
K27083
VPS10 domain-containing receptor SorCS3
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121553336
Membrane trafficking [BR:
cclu04131
]
Endocytosis
Others
Others
121553336
Endosome - Lysosome transport
121553336
Endosome - Golgi transport
121553336
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD
PKD_4
GBP_PSP
Motif
Other DBs
NCBI-GeneID:
121553336
NCBI-ProteinID:
XP_041722305
LinkDB
All DBs
Position
37:complement(24082572..24131776)
Genome browser
AA seq
1247 aa
AA seq
DB search
MVVSGSVWCWALLTCVLISFHNMLTAYAEISWPASSTTTNVWLKRMDKLPLELRANVKSA
WVKVPKYIDKESTFSRAFKMETIDGKAAVPKGGEKLSKYFDGVIGKVPPDAVSTVRDKKA
PNLSKHFTADSKKSDSSFEVKDGTLALSNRARTKRSTAFGEYSDRSQIGGPGDAFSAEKL
VEPLQGVYSPRTEYRRTGEDTRTSPRQSEPLLVTSTFPLSGDSAHNQAMGHWVGENSSVI
LTLTKQYDFNLGAFTESSLWRSVDYGSTYIKLNNKVGSTLACLYVCPTNKRKIMMLSDPE
LEQSVLISSDEGASFEKYPINFYMDGLLFHPTQENWLLASSPDNKVYSTMDFGRKWQLVS
ENVTPGRFFWAQTGLDREADVVHMETHIAKGRAQYVKCRAQRCTESNRQYLFPGHIDKNS
LVVQDDYVFVQVTKSGQASYFVSYMRESFKRIQLPKYCLPKDMHIISTDEKQVFSAVQEW
NQNDTYSLYISDSPGVYFTLSLENLRTRREPGGNLLVDLYKVEGINGIFLANKLVDHEVK
TFITYNKGQTWALLQAPNTDVAGNSLHCILPFCSLHLHLDMPVNPYLPGRIFSMDSAPGI
IVATGNIGTELSSTNLGMFITSDAGNSWRQIFEEELGVWFLDNGGALVAVSLVATVPIRH
VWLSLDEGKKWDRHSFSLAPLFLDGVLMQPENHIITFTGHLSRVSEWQLIKIDYKAIFSR
RCMDGDYQTWHLHNKGEPCVMGEKQTFMKRRPGNRCMLAQDYSRVISSEPCICRAYDFEC
DYGYERQADGKCSPAFWFNPNTATRSCSTSHNYLNSTGYRKVLSNNCKEGGKDVYSPRKQ
HCSPRPPRGLRLTTSQGELTATVGSNVTFLVYLDDGNSLWTYIQLDFGDGITFMYNLSRR
GDGIKHSYREAGIFRVTAHAENSQGYDISSMFLHITSPVERVHLSAPIVAIRKKEANLTA
VVWPVHHRTLTFFWWFENSSEPLITLDGSISYTFWKEGMNKVMVQVSSGCNILQDTKVII
VKDFFKSLLLSFSPALDKHNPDISEWREDVGRVLRTAISQVSGFPEERLLVSFFPGVPTT
AELFILPETQLPEHGKRNKEDLVSISGILINALNEGLIQFELKADTLIIVYITQLTLAPL
VYSNPIHSSSVMLMLLSVAFVGLAAFFIFKLKRKIPWIHVQAEENQEKEPEMIGTVRQNN
TMSKMKLSEFPSEKELMEKELETRSRGEHGRNGERVITREFPTCTNV
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
atggtcgtctcgggttctgtttggtgttgggctcttttgacttgtgttttaatctctttt
cacaatatgttgacggcatacgctgaaataagttggccagcgagttccacgacgacgaac
gtttggcttaaacgtatggataaattgcctttggagctgcgcgcaaacgtaaaatccgca
tgggtcaaagtcccaaagtatatcgacaaggaatccaccttttccagagcttttaaaatg
gaaacaattgatggaaaagccgcagttccaaaaggtggggagaaattgtcaaagtacttc
gacggagttattgggaaagtgccaccagacgctgtatctactgtcagagataaaaaggcg
ccaaacctttccaagcattttactgctgacagcaaaaagtctgacagttcctttgaagtt
aaagatggcacacttgctttaagtaaccgtgcgaggacaaagcgaagcacagcatttggc
gaatattcggacaggagtcaaattggaggtcctggtgacgcattttcagccgagaagctt
gtggagcctttacaaggcgtttacagtccgaggacagaataccgacgaactggggaggac
acaagaactagcccgaggcaaagtgagccgcttctggttacctccactttccctctatcc
ggagactctgcgcacaaccaggcaatggggcactgggttggagaaaacagcagcgtgatc
ctgaccttgacgaagcagtatgactttaacttgggtgctttcactgagagttctctgtgg
agatcagtggactatgggagcacttatataaaactgaataataaggttgggtcaaccttg
gcttgcctttacgtctgcccaaccaacaagagaaagataatgatgcttagcgacccagag
ctggagcaaagtgtactcatcagctcggatgaaggtgccagctttgagaagtatcccatt
aacttctacatggacggtctgctgtttcatccaactcaggaaaactggctgctggctagc
agtcctgacaacaaggtgtacagcacaatggattttggaagaaaatggcagttggttagt
gagaatgtgactcctggacggttcttctgggctcaaactgggctggacagagaggcagat
gtggtccacatggagacccacatcgccaaaggacgtgctcagtatgttaagtgcagagct
caacgatgcacagaatcaaacagacaatacctgttcccgggacacatagacaaaaattct
ctggttgttcaggacgactatgtgtttgttcaggttaccaagtcagggcaggcgagttac
tttgtgtcctatatgagggaatcatttaaacggattcagctacccaaatactgtcttccc
aaggacatgcacatcatcagtacagatgagaagcaggtgttttctgctgtacaggagtgg
aaccagaatgatacctacagtctatatatctcagactctccaggggtctacttcactctg
tctctagagaacctccggaccagaagagagccaggcggaaatttactggttgacctgtat
aaggtagaaggaataaatggcatatttctagccaacaaattggtggaccatgaagtgaag
acgttcatcacctataacaagggtcagacctgggccctgctgcaagcccctaacactgat
gtggctggaaacagtctgcactgcatcctgccattttgttctctgcatctgcacctggat
atgccagtgaacccttacctgcctggacgcatcttcagcatggactcagcaccagggatc
atcgtagctacaggcaacattggtacagagctgtcctccactaaccttggaatgtttata
acatctgatgctggcaatagctggagacagatttttgaagaagaactcggtgtttggttt
cttgacaatggaggtgctttagttgcagtgtctttagttgcaacagtacccatccggcac
gtatggttaagtctggacgagggtaagaaatgggatcgccacagtttctctctggctcct
ttgtttctggatggagttctcatgcagccagagaatcacatcatcactttcactggacac
ttaagtcgtgtttcagaatggcagctgataaagattgactacaaagccatctttagcagg
agatgcatggatggagattatcagacttggcacctacataacaagggagagccctgtgtg
atgggagagaagcagacctttatgaaacggaggccagggaaccgctgtatgctggcccag
gactactcccgagtcatatcctcagaaccatgcatctgcagggcatatgattttgaatgt
gattatgggtatgaacgtcaagccgatggaaagtgttcccctgctttttggttcaaccca
aacactgcaacaagaagctgtagcactagccataactacctcaacagcacagggtacagg
aaggttttgtccaataattgcaaagagggagggaaggatgtgtactcccccaggaaacag
cattgttcccccaggcctcccagaggcctcagactgactaccagccagggagagctcact
gccaccgtgggcagtaatgtcaccttcctggtgtatctggacgatggaaactcgttgtgg
acttatatccagctagactttggggacggcatcacgttcatgtacaacctgagccggaga
ggcgatgggatcaaacacagctatagagaagctgggatctttagagtgacagcacatgca
gagaacagccagggttatgacattagctccatgttcctacacatcaccagcccagtggaa
cgtgtgcatctctcagctcctattgtggccatcaggaagaaagaagctaacctaacggct
gtggtctggcctgtccatcacagaacactcaccttcttctggtggtttgaaaacagctca
gagcccttaataaccttggatggaagcatctcgtacacgttttggaaggagggcatgaac
aaggtcatggtccaagtgtcttctgggtgcaacatactgcaggataccaaggtcatcatt
gttaaagatttcttcaaatccctgctgttatcgttctctccggctttggacaagcacaac
cctgacatctcggagtggagagaggacgtgggccgcgtgttgagaacagctatatcacag
gtgtctgggtttccagaggaacggctgttggtatcgttctttccaggtgttccaacaaca
gcagaactattcatcctgcctgagacacagttgcctgaacatgggaagcggaacaaagag
gacttagtgagtatatcaggcattcttataaatgccctgaacgaaggattgatccagttt
gagttgaaagctgacactctaataattgtttacatcacacagctaactttggcacctctg
gtttactccaaccctattcacagtagctcagtcatgctgatgttgctatctgtggcgttt
gttggtttagctgcgttcttcatcttcaagttgaaaaggaaaatcccttggatccatgtc
caggctgaggagaaccaggaaaaggagccggagatgatcggcacggtcaggcagaacaac
accatgtccaagatgaagctcagtgagttcccctcagagaaggaactcatggagaaagaa
ctggagaccaggagcagaggagaacatggaagaaatggggagagagtgatcacaagagaa
tttcctacttgtactaatgtctaa
DBGET
integrated database retrieval system
