Coregonus clupeaformis (lake whitefish): 121553365
Help
Entry
121553365 CDS
T08357
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1 isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121553365
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
cclu04812
]
121553365
Cytoskeleton proteins [BR:
cclu04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
121553365
Intermediate filaments
Intermediate filament-binding proteins
121553365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
PH_13
SOS1_NGEF_PH
CH_2
PH_11
Motif
Other DBs
NCBI-GeneID:
121553365
NCBI-ProteinID:
XP_041722352
LinkDB
All DBs
Position
37:18919920..19027796
Genome browser
AA seq
2360 aa
AA seq
DB search
MELQRAISMPGTLSPGPLSPESHSPGALSPSSGASPSLASSPGPDPGYSAKQAAFNYNQL
EGRFKQLQDEREAVQKKTFTKWVNSHLARVSCRITDLYMDLRDGRMLIKLLEVLSGERLP
KPTKGRMRIHCLENVDKALQFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQD
IRVETEDNKEKKSAKDALLLWCQMKTAGYPNVNIHNFSTSWRDGMAFNAILHKHRPDLID
FDKLKKSNAHHNLQNAFNLAEQHLGIHKLLDVEDISVDHPDEKSIITYVVTYYHYFSKMK
ALKVEGKRIGKVLDNAIETDNMVQKYESLASDLLEWIEQTIIILNNRKFANSLVGVQQQL
QAFNTYRTVEKPPKFTEKGNLEVLLFTIQSKMRANNQKVYMPRDGKLISDINKAWERLEK
SEHERELALRTELIRQEKLEQLARRFDRKAAMRETWLSENQRLVSQDNFGFDLQAVEAAT
KKHEAIETDIGAYEERVQAVLSVAKELEAENYHDIKRVTARKDNVLRLWEYLLELLKARR
TRLEMNLGLQRVFQEMLHIMDWMDEMKMLLLSQDYGKHLLGVEDLLQKHALVEADIAIQA
DRVKAVNNNAQKFAIDAEGYKPCDPQVIRDRVAHMEFCYAELSQLAAERCARLEESRRLW
KFFWEMAEEEGWIREKEQILSSEDCGKDLTGAVRLVSQHRAFEDEMSGRASHLQQTIRQG
EELVAADHFGADKIRERIQDIQEQWAALEGLSAVRKAQLEEACNLHQFQADADDIDTWML
DVLRIVSSADVGHDEFSTQALVKKHKDVAEEITSYRPVIDALHEQSKTLPKEQTGSEEVQ
GRLAGIEERYKEVAELTRLRKQALQDALALYKMFSEADACEVWIDEKEQWLNSMEIPEKL
EDLEVVQHRFESLEPEMNNQASRVAVVNQIARQLIHSGHPSEKEIKAQQDKLNTRWSQFR
DLVDLKKDSLNSALGVQNYHLECNETKSWIREKAKVIESTQELGNDLAGVMALQRKLTGM
ERDLAAIEDKLGELGKEGECLANEHPDQAQGIMGRLGEITGVWDEMKGTLKNREESLGEA
SKLQQFLRELDDFQSWLSKTQTAIASEDMPNTLAEAEKLLAQHEGIKNEIRNYEEDYQKM
RDMGEMVTQGQTDAQYMFLRQRLQALDTGWNELQKMWENRQNLLSQSHAHQLFLRDTKQA
EAFLNNQEYVLAHTEMPTTLEGAEGAIKKQEDFMTTMDANEEKIKAVVDTGRRLVSDGNV
NADRIQEKVDSIDERHKKNRLAASELLCKLKDNRDLQKFLQDCQELSMWINEKMLTAQDM
SYDEARNLHSKWLKHQAFMAELQSNKEWLDKIEKDGMQLIAEKPETEAMVKEKLAALHKM
WDDLESTTQTKAKCLFDANKAELFTQSCADLDKWLVGVDGQIQSDDYGKDLTSVNILLKK
QQMLESQVEVRQKEVEELQSQAQVLSLEGKDTDEVDGQRRIVEKKFQQLLDPLRKRKGNL
MASREIHQFNRDVEDEILWVEERMPLAISTDHGNNLQTVQLLIKKNQTLQKEIQGHQPRC
DDIFERSQQVLKNDDNSLSGEGIRQRLADLRRLWAQILEETGKRHGRLEEAHKAQQYYFD
AAEAEAWMSEQELYMMSEEKAKDEQSSVAMLKKHQILEQAVEDYAETVHQLSQTSRGLTA
AAHPESERIGMRQSQVDKLYAGLKDLSEERRGKLDERFRLFQLNREVDDLEQWIAEREVV
AGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNQLADELINSGHTDAATIAEWK
DGLNEAWADLLELIDTRTQILAASFELHKFYHDAKEILNRILDKHKKLPEELGRDQNTVE
TLQRMHTAFEHDIQALGTQVRTLQEDAVRLQSAYAGDKADDIQKREGEVLEAWRTLLEAC
DGRRVRLLDTGDKFRFFSMVRDLMLWMEDVIRLIEAQEKPRDVSSVELLMNNHQGIKAEI
DARNDSFTNCIELGKSLLARKHYALEEIKEKLLQLTDKRKDMIDKWEDRWEWLRLVLEVH
QFGRDAGVAESWLLGQEPYLSSREMGQSVDEVEKLIKRHEAFEKSAATWEERFSALERLT
TMELLEVRRQQEEEEGRRNPPPAETQMDQALPQQREGEQVSQNGLPSDQDSPRDNGEESD
IVNGVEEHSPGGSPSEACKVKPSQAATLPAKSQDSAPANQMEGYLHRKHEWEGHNKKASS
RSWHNVYCVINNWEMGFYKDHKSASQGIPYHNQIPISLNDAACEVALDYKKKKHVFKLKA
TDGNEYLFQANDDEEMNLWMQAISNAASSDKTEMTPSSHSTPTSSRAQTLPASVALATES
SPGKREKDKEKRFSLFSKKK
NT seq
7083 nt
NT seq
+upstream
nt +downstream
nt
atggagctacagagggcgatcagtatgcctggcaccttgtccccagggcctctctctcca
gaatcccactccccaggggccctgtccccttcttctggggccagcccctctctggcctcc
agccctggccctgatccgggctactccgccaaacaggctgccttcaactacaaccagctg
gagggccgctttaagcagctgcaagatgagcgtgaggcggtgcagaagaagaccttcacc
aagtgggtcaactcccacctggccagagtgtcctgcaggatcactgacctctatatggac
ctcagggatggacgcatgctcatcaaactactggaggtcctctctggggagagactgccc
aagcccactaaggggcgcatgcgtatccactgcctggagaacgtggacaaggccctgcag
ttcctcaaggagcagagggtccatctggagaacatgggctcccacgacatcgtcgacggc
aaccaccgcctcaccctcggcctcatctggaccatcatcctccgcttccagatccaggac
atcagagtggagactgaggacaacaaggagaagaagtctgctaaagatgccctgctgctc
tggtgccagatgaagaccgcaggatatcccaacgtgaacattcacaacttcagcaccagc
tggagagatggcatggccttcaacgccattctccacaaacacagacctgacctgatagac
tttgacaagctaaagaagtccaacgcccaccacaacttgcagaatgccttcaacctggca
gagcaacacctgggcatccacaagctattggatgtagaggatatcagcgtggaccacccg
gatgagaagtccatcatcacctatgttgtgacctactaccactacttctccaagatgaag
gctctgaaggtggagggcaaacgtattgggaaggtgctggacaatgccattgagacagat
aacatggttcagaaatatgagagtctggcctctgacctcttggaatggattgaacagacc
atcatcatcctcaacaaccgcaagtttgccaactccttagtgggggtgcagcaacagctt
caggccttcaacacctaccgcaccgtggaaaaaccccccaagttcacagagaagggcaac
ctggaggttctcctcttcaccattcaaagtaagatgagggccaacaatcagaaggtctat
atgccacgggacggcaaactcatctcagacatcaacaaggcctgggagaggctggagaag
tcagagcatgagagggagctggcgctgaggacggagctgattcgtcaggagaaactggag
cagctggcacgccgcttcgaccgcaaggccgccatgagagagacctggctgagtgagaac
caacggctcgtctcgcaggacaactttggcttcgacctgcaagcagtggaggccgccacc
aagaagcacgaggccatcgagacggacatcggcgcctacgaggagcgtgtgcaggctgtg
ctctctgtggccaaggagctggaggcggagaactaccacgacatcaagcgtgtgacggca
aggaaggacaacgtgctgcgtctgtgggagtacctgctggagctgctgaaggcccggcgc
acccgtctggagatgaacctgggcctgcagagggtcttccaagagatgctccacatcatg
gactggatggacgagatgaagatgctgctgctgtcccaggactacgggaaacacctgctg
ggagtggaggacctgctgcagaagcatgctctggtggaggctgatatcgccatccaagcc
gaccgtgtcaaagccgtcaacaacaacgctcagaagttcgccatcgacgcagagggctac
aagccctgtgacccccaggtgatccgggaccgcgtggcccacatggagttctgctacgca
gagctgagccaactggccgccgagcgctgtgcccgcctggaggagtcccgccgcctctgg
aagttcttctgggagatggccgaggaggagggctggatccgggagaaggaacagatcttg
tcctcggaggactgtggcaaggacctgacgggcgccgtgcgcctggtgagccagcaccgc
gccttcgaggacgagatgagcggccgcgccagccacttgcagcagaccatcaggcaggga
gaggagctggtggccgcagaccacttcggagctgacaagatccgcgaacgcatccaagac
atccaggagcagtgggcggccctggaggggctgtctgcagtcaggaaggcccagctggag
gaggcctgcaacctgcaccagttccaggctgacgccgatgacatcgacacctggatgctg
gatgttctccgtatcgtgtccagtgccgacgtgggccacgacgagttctccacccaggcc
ctggtcaagaagcacaaggacgtggccgaggagatcaccagctaccgaccagtcatcgac
gccctgcacgagcagtccaaaaccctacccaaggagcagactggctcagaggaggtgcag
gggcgcctggcaggcatcgaggagcgctacaaggaggtggctgagctgacccggctgagg
aagcaggccctgcaggatgccctggccctctacaagatgttcagcgaggcggacgcctgc
gaggtgtggatcgatgagaaggagcagtggctcaacagcatggagataccagagaaactg
gaggatctggaagtggttcagcacaggtttgagagtctggagccagagatgaacaaccaa
gcatcccgcgttgccgtggtaaaccagattgctaggcaactaatccacagtggtcacccc
agtgagaaggagatcaaagcccaacaggacaaactcaacaccagatggagtcagttccgt
gacctagttgacctgaagaaagactccctcaactcagctctgggcgtgcagaactatcac
ctggagtgcaatgagaccaagtcatggattcgcgagaaggccaaggtgatcgagtccacc
caggagctgggcaacgaccttgccggggtcatggccctacagcgcaaactcaccggcatg
gagcgtgacctggccgccatcgaggacaagctgggagaactggggaaggagggggagtgc
ctcgcaaacgagcaccctgaccaggcccagggcatcatgggtcgtctgggggagatcaca
ggggtgtgggatgagatgaagggcaccctgaagaaccgcgaggagtccctgggcgaggcc
agcaagctgcagcagttcctccgggagctggatgacttccagtcatggctgtccaagacc
cagacggccatcgcctcagaggacatgcccaacacgcttgccgaggccgagaagctgctg
gcgcagcacgagggcatcaagaacgagatccgcaactacgaggaggactaccagaagatg
agggacatgggcgagatggtgacccagggccagacggacgcccagtacatgttcctgagg
cagaggctgcaggccctggacacgggctggaacgagctgcagaagatgtgggagaaccgt
cagaacctgttgtcccagtcccatgcccaccagctgttcctcagggacaccaagcaggct
gaggccttcctcaacaaccaggagtatgtgttggcccatactgagatgcccacgactctg
gagggggcggagggagccataaagaagcaggaggacttcatgaccaccatggacgccaac
gaggagaagatcaaagccgtggtggacaccggacgcaggctggtcagtgatggaaatgtc
aatgctgaccgcatccaggagaaagtggactctattgatgagagacataagaagaaccgc
ttggccgccagtgagcttctctgtaagctgaaggataacagagacctgcagaagttcctc
caagactgccaagagctgtccatgtggatcaatgagaagatgctcacggctcaggacatg
tcgtacgacgaagccagaaacctccacagcaaatggctcaaacaccaggcgttcatggct
gagctgcagtccaacaaggagtggctggacaagatcgagaaagatggaatgcagctgatc
gctgagaagccggagactgaggccatggtgaaggagaagctggcagcgctccataagatg
tgggatgacctggagtccaccacccagaccaaggccaagtgtctgtttgatgccaacaag
gccgagctgttcacccagagctgtgccgacctggacaagtggctggtgggagtggatgga
cagatccaatcagacgactacggcaaagatctgaccagtgtcaacatcctgctcaagaaa
caacagatgctggagagccaggtggaggtgcgtcagaaggaggtggaggagctgcagagc
caggcccaggtcctcagcctggaggggaaggacacggacgaggtggacggccagcgccgc
atcgtggagaagaagttccagcagctgctggaccctctgaggaagaggaagggaaacctc
atggcctcccgcgagatccaccagttcaacagagacgtggaggacgagatcctctgggtt
gaagagcgaatgccacttgcaatatctacagaccacggaaacaacctgcaaacagtccag
ttactcatcaagaaaaaccagaccctgcagaaggagatccagggccaccagccgcgctgt
gacgacatctttgagcggagccagcaggtcctcaagaatgacgacaacagcctcagtggc
gaggggatccgccagcggctggccgacctgcggcgcctgtgggcccagatcctggaggag
acaggcaaacgccatggacgactggaggaggcccacaaggcccaacagtactactttgat
gctgctgaagccgaggcctggatgagcgagcaggagctctacatgatgtcagaggagaaa
gccaaggatgagcagagctctgtggccatgctgaagaagcaccagatactggagcaggct
gtggaagactacgctgagactgtccaccagctctcccagacaagtagaggcctgacggcc
gccgcacaccctgaaagtgagcggatcggcatgcgtcagtcccaggtggataagctgtac
gccgggctcaaggacctgtcagaggagaggagggggaagctggacgagaggttccgtctg
ttccagctcaacagggaggtggatgacctggaacagtggatcgctgaaagggaagtggtg
gctgggtcacatgagctgggacaggactacgaacatgtcacgatgctgcaggagcgtttc
cgtgagtttgctcgcgacacaggcaacatcggtcaggagcgcgtggacaccgtcaaccag
ttggcggacgagctcatcaactcgggccacaccgacgcagcaaccatcgcggagtggaag
gacgggctgaatgaagcatgggccgacctgctggagctaatcgacacacgcacgcagatc
ctggcagcgtccttcgagctgcacaagttctaccacgacgccaaggagatcctcaaccgc
atcctggacaaacacaagaagctgcctgaggagctgggccgagaccagaacacagtggag
accctgcagaggatgcacaccgcctttgaacatgacatccaggccctggggacacaggtg
aggacgttgcaggaggatgctgtgcgtctgcagtctgcctatgccggagacaaggctgat
gacatccaaaagagagagggtgaggtgctggaggcctggaggaccctgctggaggcctgc
gacggccgcagggtcagactgctcgacaccggcgacaagttccgcttcttcagcatggtg
cgagacctcatgctctggatggaggacgtcatccgcctcatcgaggctcaggagaagcca
agggacgtgtcatccgtggagctcctgatgaacaaccaccagggcatcaaggctgagatc
gacgcccgcaacgacagcttcaccaactgcatcgagctgggcaagtccctgttggcacgg
aaacactacgcattagaggagatcaaagagaagttactacagttgacggacaagaggaaa
gacatgattgacaagtgggaggacagatgggagtggctaagattggttctggaggtgcac
cagtttggcagggacgcgggtgtggccgagtcgtggctgctgggccaggagccgtacctg
tccagcagggagatgggtcagagtgtggacgaggtggagaaactcatcaagagacacgag
gcctttgagaagtcagctgccacctgggaggagcgcttctcagcgctggaacggctgact
acgatggaattactggaagtgagaagacagcaagaggaggaggaggggaggagaaatccc
ccacctgcagagacccagatggaccaagcattgccacagcagagggagggtgagcaggtg
tctcagaacggactgccatcggaccaggactcccctcgggacaacggggaggaaagtgac
attgttaatggggtggaggagcacagcccgggcgggtcgcccagtgaagcatgcaaggtc
aagcccagccaggcagccacactcccggccaagtcccaggactcagccccagccaaccag
atggaaggctacctacaccgcaaacatgagtgggagggtcacaacaagaaggcatccagc
agatcctggcacaatgtgtattgcgtgatcaacaactgggagatgggcttctacaaagac
cataagagtgccagccaggggatcccttaccacaaccagatacccatcagcctgaatgac
gctgcgtgtgaggtcgccctcgactacaagaagaagaaacatgtgttcaaactgaaagct
acagatgggaatgagtatctcttccaagccaacgatgatgaggagatgaacttgtggatg
caggccatctccaacgctgcgtcctctgataagacagagatgacccccagcagccatagc
acccccacctccagccgagcccagaccctgcctgcctccgtcgccctggcaaccgagtcc
agccctggcaagcgtgagaaggacaaagaaaagcgcttcagccttttcagcaaaaagaaa
tag
DBGET
integrated database retrieval system
