Coregonus clupeaformis (lake whitefish): 121553392
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Entry
121553392 CDS
T08357
Symbol
polr1b
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA2
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
121553392 (polr1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121553392 (polr1b)
Enzymes [BR:
cclu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
121553392 (polr1b)
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
121553392 (polr1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpa2_4
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-GeneID:
121553392
NCBI-ProteinID:
XP_041722392
LinkDB
All DBs
Position
37:7486121..7500803
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AA seq
1134 aa
AA seq
DB search
MDFAAKWSNLPTSPSLKHLTEAGYGIPKEKQHAAVQDLTKAHIESFDQAVSDGLCRAVQA
IPPFEFMFRNDRISLAFVEATIYRPVVGKGSICRDLRVFPAECRGRRCTYRGKLVADVSW
SVNGIPKGIIKQSLGQVPIMVKSRLCNLHGLPPKELIEHHEESEEMGGYFIVNGNEKVIR
MLIMPRRNYPIAMSRPKWKNRGQGYTQYGISMRCVKEEHTAINMNLHYLDNGTVMLNFIY
QKELFFLPLGFALKALVDFTDFQIYQELIKGREENSFYKSCVSEMLRLVMEEGCITRGKV
LNYLGERFRVKMNLPEWHTDAQCANYLLDQCVCIHLKSDVEKFYLLCLMTRKLFTFAKQE
CMEENPDSLMCQEVLTPGQLYLMFLKEKMAAWMVSVKLSMDKRAHRLTGGASSENLVKMF
NLGSDVTQPFEYLLATGNLTSKTGLGMLQNTGLSVVADKLNFIRYLSHFRCVHRGAAFAK
MRTTSVRRLLPESWGFLCPVHTPDGDPCGLMNHMTAHCEIVALALPTTTLPALLCSLGVT
PVDGSPGRAYSDCYPVLLDGAMVGWVETELAPLLADSLRRFKVLKEKKIPPWTEIVLVPQ
TSKASMYPGLYLFTTPCRMVRPVRNLALGQQELIGTFEQLYINVGISEDEIEPGVTTHQE
LFPHSMLSVVANFIPYSDHNQSPRNMYQCQMGKQTMGFPLHSFQERSDNKLYRLQTPQSP
LVRPVMYDHYNMDNYPIGTNAIVAVISYTGYDMEDAMILNKSSWERGFGHGCVYKTELVD
LAEKMKGEDCLVFGVKPGDPKVMDKLDTDGLPPIGAVLQYGDPFYSYINLNTGQSFVNFY
KSQESCVVDNIKVCSNDAGSGRFKRICITVRVPRNPTIGDKFASRHGQKGILSRLWPAED
MPFTESGMTPDILFNPHGFPSRMTIGMLIESMAGKSGALHGLCHDATPFTFSEESSALEH
FGDMLRAAGYNHYGTERLYSGLSGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRV
TNQPVGGRNIQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAQVCVDCGSLLSPLL
EKPPPYWSATRHRKTVCLLCGKSDSIVTVSVPYVFRYFVAELAAMNIKIKLDVK
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atggattttgcggctaagtggagtaatttaccgacaagtccaagccttaaacatttaaca
gaagcaggctatggcataccgaaggaaaaacaacatgccgctgttcaggacctaacgaag
gctcatatcgagtcgtttgaccaagcagtttcagatggactgtgtcgtgctgtgcaggcc
atccctccctttgagtttatgtttagaaatgaccggatcagcctggcatttgtggaggcc
accatctatagaccagtggtgggcaaagggagcatctgccgggacctgagggtgttccca
gcagagtgcagagggagacgctgtacctaccggggaaagcttgtggcagatgtcagctgg
tccgtgaatgggattcccaaaggcatcatcaagcagtctctgggccaagtgcccatcatg
gtgaagtctaggttgtgtaacctgcatgggctccctcccaaagagctcattgagcaccac
gaggagtctgaggaaatgggtggttattttattgtgaatgggaacgagaaggttattcgc
atgctgatcatgccaaggagaaactatcctatcgctatgtcaagacccaagtggaagaac
agaggccagggatacactcagtatggtatctcaatgcgctgtgtgaaggaggagcacaca
gctatcaatatgaacctgcattacctggacaacgggactgtgatgctcaacttcatctac
cagaaagagctcttcttcctccccctgggctttgcactaaaggctttagtggacttcaca
gacttccagatctaccaggagctgatcaaaggtcgtgaggagaactccttctacaagagc
tgtgtgtctgagatgctgcgactcgtcatggaggagggctgcatcacccgcggcaaggtg
ctcaactacctgggcgagcgcttccgggtcaagatgaacctgccagagtggcacaccgat
gcacagtgtgccaactacctgctagaccagtgcgtctgtatccacctgaagtctgatgtg
gagaagttctacctgctgtgtctgatgacgcggaagctattcacgtttgccaagcaggag
tgcatggaggagaacccggacagtctgatgtgtcaggaggtgctcacaccaggacagctc
tacctaatgtttctcaaggagaagatggctgcctggatggtgtctgtgaaactgtcgatg
gacaagagggcccataggctgactggtggggcgagctctgagaatctggtgaagatgttc
aacctgggttctgatgttacccagccctttgagtatctgctggccactgggaatctcacc
tcaaagacaggtctgggcatgctccagaacacaggactgagtgtggtggccgacaagctc
aacttcatccgctacctgtcccacttccgctgcgtgcacagaggggcagcctttgccaag
atgaggaccacctccgtacgtcgtctgctgcccgagtcctggggcttcctgtgtcccgtg
cacacccctgacggagacccctgcggcctcatgaaccacatgacggcccactgtgaaatc
gtagccctggccctgcccaccaccaccctccctgccctgctctgctccctcggtgtgact
cctgtggatggttctcctggcagggcctactcagactgctatcctgttctcctggatggt
gccatggtgggctgggtagagactgagctggcccccctcctcgcagactccctccgcagg
ttcaaggtgttgaaggagaagaagatccctccctggactgagatagttctggttccccag
accagcaaggccagcatgtacccaggcctgtacctcttcaccaccccctgccgcatggtg
cggcccgtccgtaacctggccctgggccagcaagaactgatcggcacctttgaacagctc
tacatcaacgtgggcatcagtgaggatgagatcgagccgggtgtgaccacccaccaggag
ctcttcccccacagcatgctgagcgtggtggctaacttcatcccttactctgaccacaac
cagagtcccaggaacatgtaccagtgtcagatgggtaaacagaccatgggcttccccctc
cactcgttccaggagcgctcggacaacaagctgtaccgcctccagaccccccagagccct
ctggtcaggcctgtcatgtacgaccactacaacatggacaactaccccatcggcaccaac
gccattgtcgctgtgatctcctacactggctacgacatggaggacgccatgatcctgaac
aagtcgtcatgggagaggggctttggtcacggctgtgtttacaagactgagctggtggac
ctggcagagaagatgaagggcgaggactgcctggtgtttggggtcaaacccggtgacccc
aaggtaatggacaaactggacactgatgggttgccccccatcggagccgtactacagtac
ggagaccccttctacagctacatcaacctcaacaccgggcagagctttgtcaacttttac
aagagtcaagaaagctgcgtggtggacaacatcaaggtgtgcagcaacgacgctggctcg
ggccgcttcaagcgcatctgcatcacggtgcgagtgccccgcaaccccaccatcggggac
aagtttgccagccgccacgggcagaagggcatcctaagtcgcctgtggcctgccgaggac
atgcccttcacagagagtggcatgacccccgacatcctgttcaacccccatggcttcccc
tcccgcatgaccatcggcatgctcatcgagagcatggccggcaagtcgggcgccctccac
ggcctgtgccacgacgccactcccttcaccttctccgaggagagctcggcgctggagcat
tttggcgacatgctgcgcgccgctggctacaatcactacggcaccgagcgcctctacagc
ggcctcagcggcctggagctggaggcggacatcttcatcggcgtggtgtactaccagagg
ctacgtcacatggtctccgacaagttccaggtgaggaccactggagcgcgggacagggtg
accaaccagccggtgggcgggaggaacatccaggggggcatccgcttcggggagatggag
cgcgacgccctgctggcccacgggacctccttcctgctccacgaccgcctcttcaactgc
tctgaccgctcagtggcacaggtgtgtgtggactgtggtagcctactgtcccctctactg
gagaaaccaccaccctactggtcggccacacgccaccgcaagactgtctgcctcctgtgc
ggcaagagtgactccatcgttacggtgtctgtgccgtacgtcttccgctactttgttgca
gagctggcggcgatgaacatcaaaatcaaattggacgtgaagtga
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