Coregonus clupeaformis (lake whitefish): 121553457
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Entry
121553457 CDS
T08357
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 1, mitochondrial
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121553457
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121553457
03016 Transfer RNA biogenesis [BR:
cclu03016
]
121553457
Enzymes [BR:
cclu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
121553457
Messenger RNA biogenesis [BR:
cclu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
121553457
Transfer RNA biogenesis [BR:
cclu03016
]
Prokaryotic type
tRNA degradation factors
121553457
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
KH_1
S1
KH_KRR1_2nd
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
121553457
NCBI-ProteinID:
XP_041722512
LinkDB
All DBs
Position
Unknown
AA seq
770 aa
AA seq
DB search
MIHLLRLGPSLARLNVRLCHQSVWNSHGTTRKVGVNLGEKKLEISTGKLARFADGSAVVQ
LGDTTVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIPTNHLRRELGTTENEILTSRLI
DRAIRPLFPAGYFYDTQVLCNLLAVDGVNDPDVLAINGASAALTLSDIPWNGPIGAVRIG
LVDGEFLVNPTRKEMASSTINLIVAGAPLSQVVMIEASAENVLQQDFCHAVKVGVKHTQQ
IILAIQQMAREAKVTKRTPPKIFSAPKEMIEHTRQLASEKVYAVFTDFTHDKISRDDAIN
KVRLETEEQIKEKYPQAEPYEVMESFNTVSKEVFRNLVLNEYRRCDGRNLTSLRNISCEA
DIFKPLHGSALFQRGQTQVLCSVTFDSLESSIKTDIITTALSGVKDKNFMLHYEFPPYAT
NEIGKMSGMNRRELGHGALAEKSLRPVIPKDFPFTIRVTSEVLESNGSSSMASACGGSLA
LMDAGVPITSAVAGVAIGLISKANPEKPSEIQDYRILTDILGIEDYLGDMDFKLAGTNKG
INALQADVKIPGLPLKLVMEAIQQATVAKREILGIMNNTIAKPRANRKENGPVVENVRVP
VSRRARFVGPGGYNLRRLQAQTGVTISQVDEETFSVFAPTPGAMNEAQEFITEICKDDQE
QQLEFGAVYTATIMEIRDIGVMVKLYPNMSAVLLHNSQLDHKRIKHPSALGLEVGQQIQV
KYFGRDPTDGRMRLSRKVLQSPAATVVKTLSEKQSITMGTGNGQATNNSS
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgatacatttactgaggcttgggccctcgctggccagactaaatgtgcggttgtgccac
caaagtgtctggaacagccatggaacgacacgaaaagtgggtgtgaacttgggtgagaaa
aaacttgagatctcaacagggaaacttgccagatttgcagatgggtcggctgttgtgcag
cttggggatacaacagtgatggtgacagctgtcagcaaaacgaaaccgtccccctcccaa
tttatgccactagtggtggactacagacagaaagcagctgctgctggtagaatccccact
aaccacctgcggcgggagttgggcaccactgaaaatgagattctgactagtaggctaata
gacagggcaatcagacccctttttcctgctggttatttctatgacactcaggtcctgtgt
aacctgttggcagttgatggtgttaatgatccagatgtactggccattaatggagcctct
gctgctcttaccctttctgacattccctggaatgggcccattggtgcagtgcgcattggc
ctggtggatggagagttcttggtgaacccaacacgaaaggaaatggcttccagcactatc
aacctgatagtggctggagcacctctcagccaagtggtgatgatcgaggcatctgctgag
aatgtgttgcagcaggacttctgtcatgcagtcaaggttggcgtgaagcacacacagcag
atcatattggctattcagcagatggccagagaagcaaaagtgaccaagcgcacccctccc
aaaatattttctgcgcccaaggaaatgattgagcacacacgacagttggcctctgaaaag
gtctatgctgttttcacagacttcactcatgacaagatttccagagatgacgccattaac
aaagtgcggctagaaacagaggaacaaataaaagagaaatatcctcaagcagaaccttat
gaggtgatggagtccttcaacacggtgtccaaagaggtcttccgcaatctggttttgaat
gaatataggaggtgtgatggaagaaacctgacttcattgagaaatatttcctgtgaggct
gacatctttaagccccttcatgggtctgcacttttccagaggggacagacacaggttctg
tgctctgtaacatttgactccttggagtccagtattaaaacagacatcattactacagca
ttaagtggagtcaaagacaagaatttcatgcttcactatgagtttccgccttacgcaacc
aatgagattggaaagatgagtggaatgaacagaagagagcttggtcatggggcactggca
gagaagtctttgagacctgtcatcccaaaagactttcccttcactattagagtcacctca
gaggttttggagtctaatgggtcctcgtcgatggcgtcagcatgtggaggcagtctggct
ttaatggacgctggtgtgcctattacatcagctgtggcaggtgttgctattggactcata
tccaaggcaaacccagagaagccatcagaaatccaggactaccgaatactgactgatatt
ctgggaatcgaggattacctaggagacatggacttcaaactggcaggaacaaataagggt
atcaatgccttacaggctgatgtgaagattccaggcttacctctgaaacttgtaatggag
gctattcagcaagccacagttgccaagagggagattttgggcatcatgaacaatactatt
gccaagcccagggctaacagaaaggagaatggcccggttgtcgaaaatgtcagagtccca
gtctccagacgagcacgctttgttgggccagggggctataacctccgcagactacaagct
caaacaggtgtgacgataagccaggtggacgaggagaccttctctgtgtttgcacctact
cctggtgccatgaatgaagcacaggagttcatcacagaaatctgcaaggatgaccaagag
cagcagctggagtttggtgctgtttacactgccaccatcatggagataagggacattggt
gtcatggtgaagctgtatcccaacatgagtgctgttctgctccataactctcagctggac
cacaaacggataaaacacccaagtgctcttggattagaggttggacagcagattcaggtt
aaatactttgggcgagacccaacagatggaagaatgaggctttcgaggaaggtgttacaa
tctccagcagcaacagttgttaagacactgagtgagaaacagagcatcaccatgggcaca
gggaatggccaagcaaccaacaactcctcttga
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