Coregonus clupeaformis (lake whitefish): 121553518
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Entry
121553518 CDS
T08357
Name
(RefSeq) LOW QUALITY PROTEIN: zinc finger SWIM domain-containing protein 8-like
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121553518
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
121553518
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZSWIM4-8_C
SWIM
Motif
Other DBs
NCBI-GeneID:
121553518
NCBI-ProteinID:
XP_045067536
LinkDB
All DBs
Position
37:complement(28355472..28389208)
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AA seq
1941 aa
AA seq
DB search
MELMFAEWEDGERFSFEDSDRFEEDSLCSFISEAESLCQNWRGWRKQSAGPNSPTVKIKD
GQVIPLVELSAKQVAFHIPFEVVEKVYPPVPEQLQLRIAYWSFPENEEDIRLYSCLANGS
PDEFQRGEQLYRMRAVKDPLQIGFHLSATVVSPQAGQSKGAYNVAVMFDRCRITSCSCTC
GAGAKWCAHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFAQYLISELPQQILPT
AQRLLDELLSSQSTAINTVCGAPDPTAGPSASDQSTWYLDESTLSDNIKKTLHKFCGPSP
VVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGIWNLLSIVREMFKRRDSNAAPLLE
ILTEQCLTYEQIIGWWYSVRTSASHSSASGHTGRSNGQSEVAAHACASMCDEMVVLWRLA
VLDPTMSPQRRLELAAQLKQWHLKVIEIVKRGQHRKSLDKLFQGFKPAVESCYFNWEVAY
PLPGITYCSADKKSASFCWARAVQQQRGAKAGLAGDPPEPGGGISGSSEGGGGDYKGRSP
QQEVAVRPKETIVSKRKGLSAGGGGGVLVRLGGSVSLSLEEVSSKGMYKXAGSSSSTGGK
AKITQGGKSSSGGSGAVGGKHQAAKRRTSSEDSSLEPDMAELSLDDGSSLALGAEASNTF
DFTPPPPEMLPSPSPLLREPHKYSGGGKGAGNTPKERAFEGKRVTLAATLPAAEPQPAFP
TKENTAVVVEAAVAMEKEVNVEAEIEVNGNEEAAIAGDARPSTSVVTVTAAAAKPPRGGR
RETGAGAVALPNQAPEAGAGGDPVGEDDYQAYFLNAATEEGAERVLENNNEEEPDIFAGI
KPLEQEGQMEVLFACAEALHAHGYSNDACRLAVELAGDLLANPPDLKVEQPQTKGKKSKV
STSRQTQVATNTLVKTSFLLTVLSERLELHNLAFSTGMFSLELQRPPASTKALEVKLAYQ
ESEVVALLKKIPLGLVEMTSIRDRAEQLRDGNFCDYRPVLPLMLASFIFDVLCTPVVSPT
GSRPPSRNRNNEMPGDEELGFEAAVAALGMKTTVSEAEHPLLCEGTRREKGDLALALMIT
YKDDQSKLKKILDKLLDRESQTHKPQTLSSFYSSKPAASSQRSPSKHAAHTAHGHGGATG
GVSKHAPNTTAVAGSSSVQAVAAGGAAVQQAGLAGSGVQNNATAGECVSEAKEQDGAQPA
SCDQPSEAAPFKPEGTVPSRLALGGRGAYSGRCWGSPVRQKKKHTGMASIDSSAPETTSD
SSPTLSRRPLRGGWAAASWGRGQDSDSISSSSSDSLGSSSSSGSRRAGGGARAKSTDTSR
YKGRRPECHAPHVPNQPSEAAAHFYFELAKTVLIKAGGNSSTSIFTQPSASGGHQGPHRN
LHLCAFEIGLYALGLHNFVSPNWLSRTYSSHVSWITGQAMEIGSAALNILVECWDGHLTP
PEVASLADRASRARDPNMVRAAAELALSCLPHAHALNPNEIQRALVQCKEQDNMMLEKAC
MAVEEAAKGGGVYPEVLFEVAHQWYWLYEQTVGGGSGAQREGPGRCGANGGAGRRPPETG
HSVMDNIGNMDSSGVATVTASVTAAAVVPVISVGSTIYQSHALPGSAMAHPHTQGLHPYT
TIQAHLPTVCTPQYLGHPLQHVPRPTVFPVSGGAYPQGMHPAFIGAQYPFSVATGPHPPM
AATAVTFPGVPVPSMTQIAVHPYHTDTGLPLSTTVAVGGVHSGATIQAIQGSSLPGMSSQ
PASLVSAPFPSEDEQHSQPISQQGLHYLHSAYRVGMLALEMLGRRAHNDHPNNFSRSPPY
TEDVKWLLGLAARLGVNYVYQFCVGAAKGVLSPFVLQEIIMEALQRLNPAHIHAHLRTPA
FHQLVQRCQQAYLQYIHHRLIHLTPADYDDFVNIIRSARGAFCLTPVGMMQFNDVLQNLK
RGKQTKELWQRISLEMATFSP
NT seq
5826 nt
NT seq
+upstream
nt +downstream
nt
atggaactaatgttcgctgagtgggaagacggagagaggttctccttcgaagattctgac
cggttcgaggaggactctctctgctccttcatatcagaggctgagagtctgtgtcagaac
tggaggggatggagaaaacagtctgctggaccaaattctcctacagtgaagattaaagat
ggtcaggtcatccctctggtggagctatcagccaagcaggtggcgttccacatcccgttt
gaggtggtggagaaggtctatcctcctgtccccgagcagctgcagctccgcatcgcctac
tggagcttcccagagaatgaggaggacatccggctgtactcgtgtctggccaacggcagc
cctgatgagttccagcgaggggagcagctatacaggatgagggctgttaaagaccctctg
cagataggtttccacctcagtgccaccgtggtgtcgccccaggctggccaatcaaaaggg
gcgtacaatgtggctgtcatgttcgaccgctgccgcatcacttcctgcagttgcacctgt
ggagccggggccaagtggtgcgcccacgtggtggccctctgcctcttcaggatccacaac
gcgtctgcagtgtgcctgcgagcccccgtgtcagagtccctgtcccggctgcagagggac
cagctacagaagtttgcccagtacctcatcagtgagcttccccaacagattttgcccaca
gcccagaggctcctggatgagctcctgtcttcccagtccacagccatcaacacagtgtgt
ggggctcccgaccccactgctggcccctcagcctctgatcagagcacctggtatctagat
gagtctacgctcagtgacaacatcaagaagactctgcacaagttctgtggcccctctcct
gttgtcttcagtgatgtcaactccatgtacctgtcatctacggagcccccggcggcggca
gagtgggcgtgtctgctgaggccgctgagggggcgagagcccgaggggatctggaacctc
ctgtccatcgtcagggagatgttcaagaggagagacagcaacgctgcacccctactagag
atcctcactgagcagtgtctcacttatgaacagatcattggctggtggtacagcgtgcgt
acgtcggcgtcccacagcagtgccagcgggcacacggggcgcagtaacgggcagtcggag
gtggcagcccacgcctgcgccagcatgtgtgatgagatggtggttctgtggaggctggct
gtgctagaccccaccatgagccctcagaggcgtttggagctggctgcccagctcaagcag
tggcatctgaaagtgattgagatcgtgaagcgagggcaacaccgcaagtccctggacaaa
ctgttccagggcttcaaaccggccgtggagtcctgctacttcaactgggaggtggcctac
ccactgccaggcatcacctactgcagtgcagacaagaagagcgcttccttctgctgggcc
agggcagtgcaacagcagagaggggccaaggctggcctggctggagacccccctgaacct
ggaggagggatatctggcagctctgagggaggtgggggagactacaagggcagaagtccc
caacaagaagtggctgtcaggcccaaagagaccattgtgagcaagaggaaggggttgtcg
gccgggggcggaggaggggtcctagtgcggctagggggtagtgtgtctctctctctagag
gaggtcagtagtaaggggatgtacaaangcgcaggttcctcctcgtccactgggggcaag
gctaagataacccaggggggcaagtcgtcctccgggggatcaggagcggtagggggaaaa
caccaagcagccaagcggcgcaccagcagtgaggacagctccctggagcctgacatggcc
gagctgagcctggatgacggctccagtctggcgctaggcgctgaggccagcaacaccttt
gacttcacgcccccgccgcctgagatgctgccctcaccaagcccgctactcagagagcca
cacaaatacagtgggggagggaaaggggctggaaacacgcccaaggagcgcgccttcgag
ggcaaacgggtcaccctcgctgccaccctgcctgccgctgagccccagcccgccttcccc
accaaagagaacactgctgtcgtcgtggaagcggccgttgccatggagaaggaggtgaac
gtggaggcggagatagaggtgaatggaaatgaggaggcggccatcgctggagacgctcga
ccctccacctcggttgttactgtgactgcagctgccgccaagccaccgcgtggtgggcgc
agagaaactggcgctggagccgtagccctgcccaatcaggccccagaggcaggggccggg
ggagaccctgtaggagaggatgactaccaggcctacttcctgaatgcagccactgaggag
ggggcagagagagtgttggagaacaacaatgaggaggaaccagacatctttgctgggatc
aagccactggagcaggagggccagatggaggtgctgtttgcgtgtgcagaggccctccac
gcccacggctacagcaacgatgcctgcagactggcggtggagctagctggagacctgctg
gccaaccctccagacctgaaggtggagcagccccagaccaagggtaagaagagcaaggtg
tccaccagcaggcagacccaggtggccaccaacaccctggtcaagacctccttcctgctg
acggtgctgagcgagaggctggagctccacaacctggccttcagcacgggtatgttctct
ctggagctgcagaggcccccagcctccaccaaggccctggaggttaagcttgcctaccag
gagtcagaggtggtggctctgctgaagaaaatccctctgggcctggtggagatgacgtcc
atacgggacagggccgagcagctccgagacgggaacttctgtgactacaggcccgtcctg
cccctcatgctggccagcttcatatttgatgtgctgtgtaccccagttgtctcccccaca
ggttcccgtccgcctagccgtaaccggaacaacgagatgcctggagacgaggagctgggc
tttgaggcggctgtagcagcactgggtatgaagaccacagtgagcgaggcagagcaccct
ctgctgtgtgaggggaccaggagagagaaaggagacttggctctggccctcatgatcaca
tacaaggatgaccagagcaagctgaaaaagatcctggacaagctgctggacagagagagc
cagacccacaagccccagaccctgagctccttctactccagcaagccagctgccagcagc
cagaggagcccgtccaagcacgctgcccacactgctcacggacacggaggtgccaccgga
ggggtgtccaaacacgcccccaacaccacggctgtagccgggtcctcctctgtgcaagcg
gtggctgctggaggggcagcagtacagcaggcgggtctggcgggcagtggggtgcagaac
aacgccacagccggagagtgcgtcagtgaggccaaagagcaagatggcgcccagcctgcg
tcatgtgaccagccgagcgaggctgccccattcaagccagagggcacggtgcccagccgc
ttggcgctgggaggacggggggcatacagcgggcgctgctggggctctcctgtccgccag
aagaagaaacacacaggcatggctagtatcgacagcagtgctcctgagaccacctcagac
agctcccccacccttagtcgacgcccactcagagggggttgggccgcagcctcctggggg
aggggccaggacagtgacagcatcagcagctcctcttctgattcgctgggctcctcctca
tccagcggctctcgcagggccggaggcggggctagggcaaagagcacagacaccagcagg
tataaagggcgtcgtcctgagtgccatgcaccacatgtgcccaaccagccgtcggaggca
gcggcccacttctacttcgagctggccaagaccgtgctgatcaaggccgggggcaacagc
tccacctccatcttcacccagccctcagccagtggaggccaccaggggccccaccgcaac
ttgcacctctgtgccttcgagatcggcctgtacgccctgggcctgcacaactttgtctcg
cccaactggctctccaggacctactcctcccacgtctcctggatcacaggccaggccatg
gagatcggtagtgctgccctcaacatcctggtggagtgctgggacgggcacctcacccct
cccgaggtggcatcactggcagacagggcatcacgggcgcgggaccccaacatggttcgc
gctgcggctgagctggccctgagctgcctgccccatgcacatgccctcaaccccaatgag
atccagagggccctggtgcagtgcaaggaacaggacaacatgatgctagagaaagcatgt
atggctgtagaggaggcagccaaggggggtggtgtgtaccctgaggttctgtttgaggtg
gcccaccagtggtactggctctatgagcagacagtaggagggggctcaggggcccagcgt
gagggcccgggacgctgtggggccaacggtggagctgggaggaggcccccagagacgggt
catagtgtaatggacaacattggcaacatggactcctctggcgttgccacggtgaccgcc
tcagtgacagcagcggctgtggtgcccgtcatctctgtgggctccaccatctaccaatcg
cacgcccttcctggctcagccatggcccacccccacacccagggcctgcacccctacacc
accatccaggcccacctgcccacagtctgcactccccagtacctggggcacccactgcag
catgtcccccggcccactgtattcccagtgtcagggggtgcctacccacagggaatgcac
ccggcctttatcggtgcccagtacccgttctcagtggccactggcccccatccgcccatg
gcagcgacagcggtcaccttccctggtgttcccgtgccgtccatgacccagatcgccgtc
cacccctatcacaccgataccggcctgcctctgagcaccactgtagcagtaggtggcgtc
cattcaggcgccacaatccaggccattcaggggtcttctcttcctggtatgtcttctcag
cccgcctcattggtcagcgcgcccttcccgtctgaagacgagcagcatagccagccaatc
agccagcagggccttcactacctgcactcagcctacagagttggcatgctagctttggag
atgctgggcaggagggctcacaacgaccaccccaataacttctcccgcagcccaccttac
acagaggacgtcaagtggctcttgggcctggctgcacggctaggggtgaactacgtgtac
cagttctgtgtgggcgcagctaagggcgtgctcagccccttcgtccttcaggagatcatc
atggaggctctccagagactgaaccccgcccacatccatgcccacctccgcacgcctgcc
ttccaccaactggtgcagcgctgccagcaggcctacctacagtacatccaccaccggctg
atccacctgaccccggccgactacgatgactttgtcaacatcatccgcagcgcccgcggg
gccttctgcctgacccctgttggcatgatgcagttcaacgacgtgctgcagaacctgaag
aggggcaagcagaccaaggagctgtggcagcgcatctctctggagatggccaccttctcc
ccatga
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