Coregonus clupeaformis (lake whitefish): 121553529
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Entry
121553529 CDS
T08357
Symbol
ercc6
Name
(RefSeq) DNA excision repair protein ERCC-6
KO
K10841
DNA excision repair protein ERCC-6
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
121553529 (ercc6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cclu03036
]
121553529 (ercc6)
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121553529 (ercc6)
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
121553529 (ercc6)
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
121553529 (ercc6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
TFIIF_beta
Motif
Other DBs
NCBI-GeneID:
121553529
NCBI-ProteinID:
XP_045067430
LinkDB
All DBs
Position
37:4045754..4098563
Genome browser
AA seq
1480 aa
AA seq
DB search
MPVEGSEDQVPPLSSPASAALTSGGMDEDGANRGTAGRSISITGTSQGDTEQPAMACPDS
TGSGEGSSGSKKSGALLHIDRQRIQAVSASSGAEELQGLGVAVYDQDVLEQGVLQQVDQA
IQEASQAAAKAEAGTEYQSVLDDVRSCMAALKHINKIIEQLTPYADSSKDINRKIESVRR
QKENKEKQLKKIRAKQRRLQAILGGEDTQKIEAEILLEDEGDEEPGPSTLGSMLMPAQET
EWEELIRTGHMTPFGTRVPRKEEKKEPRKFMLSENSGFDAYLADQAKMAVDRKRPAPLKQ
KKKTAVGEGGKKTNGAALPSNSVDKKLQKRMRKLQRTALKAHPKAQAKRVMLIPKPRRKH
QAGGDETDSEGSEYLPSDDLMDPEREEREDRDEGWGEEDEVEYYELKPYRKKSEGKGGKK
GKRGERDEEEYYPDSSDEDEGSGKKGKEKMNKDDGDVEFYKQRIRRWRRQRLREREEKRE
RGEEESDESDAEFDEGFKVPGFLWNKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTI
QVIAFLAGLSYSKLRTRGSNYRYQGLGPTVIVCPATVMHQWVSEFHTWWPPFRVAVLHDT
GSFTQTKEKLISEMAACHGVLITSYSAVRIMQETLQRYDGWHYVILDEGHKIRNPHAGVT
TACKQFRTPHRFILSGSPMQNNLKELWSLFDFVFPGKLGTLPIFMEQFSVPITMGGYSNA
SPVQVQTAYKCACVLRDTINPYLLRRMKADVKANLSLPDKNEQVLFCRLTEEQREVYQGF
LDSKEVYQILNGDMQVFSGLIALRKMCNHPDLFSGGPKILKGIPEDQLTEEEHFGFWKRS
GKLMVVESLLRLWFKQQHRVLLFTQSRQMLGILEVFVRENGYTYVKMDGTTTIASRQPLI
ARYNEDKSIFVFLLTTRVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKEVT
VYRLLTAGTIEEKIYHRQIFKQFLTNRILKDPKQRRFFKSNDIYELFTLSNPDGTQGTET
SAIFAGTGSDVQAPKKPVRPRSNHIHSVTNHNVSSTGGGTIPSPSPRPGDRTTPLRSNIS
LDRNNRLTDSQEANQGEAREGPDIPIDQSKTDCDTQHSREEGSNAHIHTDPDRDTNSNLP
HKHREHSHTNSPSPSTQKHREKKHSSHKHRDSQGPGSSPYKHREKRKHCDSTAEGPKNKH
GKQKQAKVEGHRISYLVKKRSYKGQEEREEQPEKQDQRQSDDYVLAKLFKKSGIHSVMQH
DSIMEASNPDFVLVEAEANRVAKDALKALKVSRQHCRLPYNRPAPAPTRKRFGQKKNPLL
SAPPSTAAPAQDKCKDASIIKKTIARKPIPGGHFSGEGVEVGGSSSALLARMKARNHLSL
PQREGDGGGEEEEEEEGGHTTSGTPAPPTEHDELLVELRNFVAFQGAVDGQASTKEVLDH
FTPRLNQTQTPVFRELLRNICNFHRAEGQEGTWRLKPDYR
NT seq
4443 nt
NT seq
+upstream
nt +downstream
nt
atgccagtagaaggtagtgaggaccaggttcctcccctctccagcccggcgagtgctgct
ctcacctcgggaggaatggacgaggatggggccaacagaggaaccgctggacgctcaatc
tccatcactgggaccagccagggggacactgagcagcctgccatggcctgcccagatagc
actggatctggggagggcagcagtggcagtaagaagtctggagccctgctacacattgac
cgccagcgtatccaggctgtgagtgccagctccggggctgaagagctgcagggtctgggc
gtcgctgtgtacgaccaggatgtgttggagcagggggtcttgcagcaggtggaccaggcc
atacaggaggccagccaggctgcagccaaggctgaggcagggacggagtaccagtctgta
ctggacgatgtgaggtcgtgtatggcagctctgaagcacattaataagatcatagagcag
ctgactccctacgctgactccagtaaagacattaacaggaagattgagtctgtcagacgg
cagaaggagaacaaggagaagcagttgaagaagatcagagcaaagcagaggagactacag
gccatcctggggggagaggacacacagaagatagaggctgagatactgctggaggacgaa
ggggacgaagagcccggcccatctactctgggcagtatgctaatgccggcccaggagacg
gagtgggaggagctaatccggacgggtcacatgacgccgtttggaacgagggtccctcgg
aaggaggagaagaaggaaccacgcaagttcatgctgtctgaaaactctggcttcgacgct
tacctggcggaccaagctaagatggcggtggacaggaagagacctgcacccctgaagcag
aagaagaagactgctgtgggcgagggaggaaaaaagaccaacggagcggctctcccctcc
aactctgtggataagaagctccagaagcgaatgcgtaagctgcagaggaccgctctgaag
gcccaccctaaggcccaggctaagagggtcatgctgatccccaagccgaggaggaagcat
caagctgggggagatgagacggacagcgaggggtctgagtacctgcccagtgatgatctg
atggaccccgagagagaagagagggaggaccgagatgagggctggggagaggaggatgag
gtggagtactatgagttgaagccctacaggaagaagagtgaaggaaaaggggggaagaag
gggaaaaggggagagcgtgacgaggaggagtattaccccgacagctcagacgaagacgag
ggttcagggaaaaagggaaaagagaagatgaacaaagacgatggagatgtggagttctac
aaacagaggatacggaggtggaggaggcagcggctgagagagagggaggagaaaagagag
agaggagaggaggagagtgacgagagtgatgctgagtttgatgaaggattcaaggtgcct
ggattcctctggaataaactcttcaagtaccagcagacaggtgtgaggtggctgtgggag
ctacactgccagcaggcaggggggatcctgggggatgagatgggtctgggtaaaaccatc
caagtcatcgcattcctggctggcctcagctacagcaaactacgcacacgaggttccaac
tacaggtaccaaggactgggtcctacagtgatagtgtgtccagctactgtcatgcaccag
tgggtcagtgagtttcacacctggtggcccccattcagagtggctgtcctacacgacacg
ggatccttcacccaaacaaaggagaagttgatatcagagatggcagcatgtcatggtgtc
ttgataacgtcgtattcagccgtgaggatcatgcaggagaccctgcagagatacgacggc
tggcactacgttatactggacgagggacacaagatccgcaaccctcacgctggagttacc
actgcctgcaagcagttccgtactcctcataggttcattctatctggcagtcctatgcag
aacaacctgaaggagctgtggagtctatttgactttgtcttccctggcaaactgggcacg
ctgcctatttttatggaacagttttctgtacccatcacgatggggggctacagcaacgct
tcacctgtacaggtccagacagcttataagtgtgcgtgtgttctgagggataccattaac
ccttacctgctcagacggatgaaggctgacgtgaaggccaacctctctttacctgacaag
aatgaacaggttttgttttgcaggctaacagaggaacagcgtgaggtgtatcagggcttt
ctggactccaaagaggtctaccaaatactgaatggagatatgcaggtgttctcgggcctg
atagcgctgcgtaagatgtgtaaccacccggacctgttctctggaggtcccaagatcctg
aagggtataccagaggaccaactgactgaagaggaacactttggcttctggaaacgctcc
ggcaaactgatggtggtggaatcactgctccgactttggtttaaacagcaacacagagtc
ctgctgttcacacagtccagacagatgttggggatattggaggtgtttgtgagggagaat
ggctacacctatgtgaagatggatggtaccaccaccatcgcctccagacagcctctcatc
gctcgatacaacgaagacaagtctatctttgtgttcttgttgaccacaagagtggggggg
ctgggagtcaacctgaccggagctaacagagtcatcatctatgaccccgactggaaccct
agcactgatacacaggctcgagagcgagcttggaggattggtcagaaaaaggaggtgact
gtctacagactactgaccgctgggaccatcgaggagaagatctaccacaggcaaatcttc
aaacagttcctgaccaaccgcattctgaaggaccccaaacagcgacgcttcttcaagtcc
aacgacatctacgagctgtttaccttatctaaccctgacgggacgcagggcacagagacc
agcgctatattcgcaggtacgggttctgatgtccaagctcctaagaaaccagtcagacca
aggtctaaccacatacactctgtaaccaatcacaatgttagctccactggaggtggaacc
atcccttccccatcgccccggcctggagacaggaccaccccccttcgcagtaacatctct
ctcgataggaacaacaggctgacggacagccaggaagccaaccagggcgaggcaagggag
ggaccagatattcctattgaccagtccaagacagactgtgacacacagcactctagggag
gagggaagcaacgctcatatacacacagaccccgacagagacacaaactccaatctgccc
cacaaacacagagaacattcacacactaactcccccagtcccagcacacagaagcacaga
gaaaaaaaacacagttcacacaaacacagagactctcaaggacccggctccagtccctac
aaacacagggagaagaggaagcactgtgactcgacagcagaaggacctaaaaacaaacac
gggaaacagaaacaggccaaggtcgagggtcatcgcatctcctacctggtgaagaagagg
agctacaaaggacaggaggagcgcgaggagcagccggaaaaacaggaccagagacagagc
gacgactatgtactggccaaactcttcaagaagtcgggtatccacagtgtgatgcagcat
gactccatcatggaggcgtctaacccagactttgtcctggtggaagctgaagctaacaga
gtagctaaagacgctttgaaagctctgaaggtctccaggcaacactgtagactgccctac
aaccgacctgccccagctccaaccaggaagaggtttggtcagaagaagaatcctttgctg
tctgctcctccttctacagctgccccagctcaggacaaatgcaaggatgcttccatcatc
aagaaaaccattgccaggaaacccatcccagggggtcacttcagtggagaaggggtagag
gtgggcggatcttcctccgctctgctggcccgcatgaaagctaggaaccacctcagcctg
ccccagagagaaggggatggaggaggagaggaagaggaagaggaggagggggggcatacc
acctcgggcactcctgccccccctacggaacacgatgagctcctggtggagctgaggaac
tttgtggcattccagggagctgtggatggacaagccagcaccaaggaggtcctggaccac
ttcacccccagactgaaccagacccagacccctgtcttcagagaactactccgaaacatc
tgtaacttccacagggcagaggggcaggaggggacgtggagacttaaacctgactacaga
taa
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