Coregonus clupeaformis (lake whitefish): 121553744
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Entry
121553744 CDS
T08357
Symbol
dhx16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121553744 (dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cclu03041
]
121553744 (dhx16)
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121553744 (dhx16)
Spliceosome [BR:
cclu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
121553744 (dhx16)
Complex C
U4/U6.U5 tri-SnRNP related factors
121553744 (dhx16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
Cas3-like_C_2
AAA_19
AAA_30
SRP54
Flavi_DEAD
nSTAND3
Motif
Other DBs
NCBI-GeneID:
121553744
NCBI-ProteinID:
XP_045082494
LinkDB
All DBs
Position
17:complement(74104290..74123460)
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AA seq
1047 aa
AA seq
DB search
MANLEQWVSDSLHDILGLSDRYVAQFMIGSARKSSSSQDFVAHLKSTGTIDINQRVIAFA
QELYEKIPRKQVVEKPARAIERHVMEIERKNRTYTLLSDSESDGEAVREREKEKKKIKDR
GDKRKHLRKREASQSSSEEETPKSGKLGHGDQKDEEEEEEWEKEERERVLDLEERDAFAE
RMKLKDKDKTRNIMERTDKKGYEEAQKRLKMAEEDHKKILPELRKESRRNYLSKREAEKL
EDLEAEIADEEYLFSTDALTERERKELEYKRNLRDLAKDYKKAGAKEKEERKNRYYMPEE
KRSKDIPQRDMELDLEMPMEGGGEQGRWEEERLKTASLSFGAKKEREKGLKAEREKYQLI
LEEDEMINFVSSAVIMKGTQDEKEQAALSQAEVQKQSIQEVRRSLPVFPYREDLLLAIQQ
HQILVVEGETGSGKTTQIPQYLMESGYNDGGMKIGCTQPRRVAAMSVASRVAQEVGVKLG
NEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVVIIDEAHERTLHTDILFG
LIKDIARFRPDLKVLVASATLDTERFSCFFDDAPVFRIPGRRFPVDIFYTKAPEADYLEA
CVVSVLQIHVTQPPGDCLVFLTGQEEIETCCELLQERCRRLGSKISELLVLPIYANLPSD
MQAKIFSPTPPGSRKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMESLIVTPC
SRASANQRAGRAGRVAAGKCFRLYTAWAFKHEMEESTVPEIQRTNLGNVVLLLKSLGIND
LIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKMILASEQY
KCSEEVLTIAAMLSVNNSIFYRPKDKVVHADNARQNFVVPGGDHMVLLNVYTQWLESGYS
TQWCYENFIQFRSMKRARDVREQLEGLMDRIEVEVCSSGGDIVPIRKAVTAGYFYHTARL
SKGGYKTVKHQQTVYVHPNSSLFEEQPRWLIYHELVFTTKEFMRQVIEIDSGWLLEVAPH
YYKNKELEDSSSKKMPRKQGKAKEELG
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacctagagcaatgggtgagcgacagtctgcacgacatcctcggcctgagtgac
agatatgttgcccagttcatgatcggctccgcacgtaaatcctcgagctctcaagacttt
gtggcccacctcaagtcgacgggcaccatcgacattaatcagagagtgatcgcctttgca
caggaactgtatgaaaagattcctcgtaaacaagtggttgaaaagccagccagagcgata
gagcgacatgtcatggagattgagaggaagaatcgaacttacaccctactgtcggacagt
gagagcgacggagaggcagtgagagagagggagaaagagaagaagaaaattaaagaccga
ggcgataagagaaagcacctcaggaaaagagaggcgagtcaatcatctagtgaagaggag
acccctaaaagtggtaaactgggccatggcgaccagaaggatgaagaggaggaggaggag
tgggagaaggaagagagagaacgcgtactggatctggaggagagggatgcctttgccgaa
cgaatgaaactgaaggacaaagacaagacgaggaacatcatggagagaacagacaagaag
ggctacgaggaggctcagaaaagactaaagatggcagaggaggatcacaagaaaatcctg
ccagagttgaggaaggagtctcgcaggaactacttgtccaagagagaggctgagaagctg
gaggacctggaggcagagatagccgacgaggagtacctgttctccacggacgcgctgacg
gagagggagcggaaggagctggagtacaagcgcaacctcagagacctggccaaggactac
aagaaagctggcgccaaggagaaggaggagaggaagaacagatactacatgccagaggag
aagaggagtaaagatattcctcagagggacatggagctggacttggagatgccgatggag
ggtggaggagagcagggccgctgggaggaggagaggttgaagaccgcctcgctcagcttc
ggggccaagaaggagagggagaaagggttgaaggcagaaagggagaagtaccagctgatc
ctggaggaggatgagatgatcaactttgtcagcagtgccgtcatcatgaagggaacccag
gatgagaaggagcaagcagccctgtcccaggctgaggtccagaagcagtccatccaggag
gtgagacgcagcctgcccgtgttcccctacagagaagacctgctcctggccatccagcag
caccagatcctggtcgtcgagggagagacgggctctggcaagaccacccagatcccccag
tacctcatggagtcgggctacaatgatggaggcatgaagattggctgtacccagccccgc
agagtggcagccatgtccgtagcatccagggtggcacaagaagtgggcgtcaagctgggt
aatgaggtaggctacagtatccgttttgaggactgtacgtcagagaggacggtcctcaaa
tacatgactgacggaatgctgctcagagagttcctcacagagcctgatctggccagctac
agtgtggtcatcattgatgaggcccacgagcggacactgcacacggacatcctgtttggc
ctgatcaaggacattgcccggttccgtccggacctgaaggtgctggtggccagcgccacc
ctggacacagagcgcttctcctgcttcttcgacgacgcgccggtcttcagaatccctggc
aggaggttccctgtggacatcttctacacgaaggctcctgaggcagactacctggaggcc
tgtgttgtgtcggtgctacagatccacgtcacacagccccccggagactgtctggtcttc
ctcactggacaggaggagattgagacttgctgtgagctgctgcaggagagatgcaggcgt
ctgggttctaagatctctgagctcctggtgcttcccatctacgccaacctaccctcagac
atgcaggccaagatcttcagccccacaccccctggctcacgcaaggtggtggtggccact
aacattgcagagacctctctaaccatcgatgggatcatatatgtcatagatccaggcttc
tgcaagcagaagagctataacgcccgcactgggatggaatctctgattgtcactccttgc
tcacgggcctcagccaatcagcgagcaggtcgtgcaggcagagtggctgctgggaagtgt
ttccgtctctacactgcgtgggcgttcaaacacgagatggaggagtccaccgtgcctgag
atccagagaaccaacctgggcaatgtagtgctactgctcaagagcttgggaattaatgac
ctcatccactttgacttcatggacccgccccctcacgagaccctggtgctagccctggag
cagctgtacgcactgggtgctctcaaccacctcggagagctcaccaagttgggccgcagg
atggctgagctgccggtggaccccatgctgagcaagatgatcctggcctcagaacagtat
aagtgttctgaggaggtgttgaccatcgcggccatgctgtctgtgaacaactccatcttc
taccggcccaaagacaaggtggttcacgccgacaacgccaggcagaactttgtggtgccc
ggaggagaccatatggtgctgctcaacgtctacacacagtggctggagagtggctactcc
acccagtggtgctacgagaacttcatccagttccgctccatgaagcgggcgcgggatgtc
agggagcagctggagggcctgatggacaggatcgaggtggaggtgtgcagctcaggcgga
gacattgtgcccatccgcaaggcagtgacggcggggtatttctaccacacggcgcggctc
agcaaggggggctacaagacggtgaagcaccagcagacggtctacgtccaccccaacagc
tccctgttcgaggagcagccccgctggctcatctaccacgagctggtcttcaccaccaag
gagttcatgagacaggtgattgagatagacagcggctggctgctggaggtggctccccac
tactacaagaacaaggagctggaggacagcagcagcaagaagatgcctcgcaaacagggc
aaggccaaggaagagctgggctaa
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