Coregonus clupeaformis (lake whitefish): 121553762
Help
Entry
121553762 CDS
T08357
Name
(RefSeq) TATA-binding protein-associated factor 172-like isoform X1
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121553762
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
121553762
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
HEAT
Helicase_C
HEAT_EF3_N
TPR_Trm732_C
Vac14_Fab1_bd
HEAT_2
TOR1L1_N
HEAT_EZ
Motif
Other DBs
NCBI-GeneID:
121553762
NCBI-ProteinID:
XP_041723073
LinkDB
All DBs
Position
37:complement(8065861..8127615)
Genome browser
AA seq
1861 aa
AA seq
DB search
MAVSRLDRLFILLDTGTTPVTRKAAAIQLGDVVKLHPHELNNLLSKVLTYLRSPNWDTRI
AAGQAVEAIVKNIPEWNPSPKPKEESCADFSPEDSSSDRLSFYRFDISRLLKHGASLLGS
AGAEFEVQDDKSGEVDPKERLARQRKLLQRKLGLDMGAAIGMDTMELFNDEDLDTQYTCT
LSGPKTQGQGGKGSEPCSSTGNHVPMQAAEIIDSEFRPGMSNRQKNKAKRMAKLVAKQRS
RDLDPNERSNDSFEGEPEEKRRKTTNVVIDQPATEHKVLIDNVPDNSSLLEETQEWPLES
FCDELCNDLFNPSWEIRHGAGTGLREILKSQGAGGGKLVGCTAEQMARHHQEWLEDVVIR
LLCVFALDRFGDFVSDEVVAPVRETCAQTLGVALRHMTDCAVAMTVDILLKLLTEDQWEV
RHGGLLGIKYGLAVRQDLISALLPRVLPAITEGLQDLDDDVRAVAASALIPVVDGLVQLL
PNKVPFIVNSLWDALLELDDLTASTNSIMTLLSSLLTYPQVRQCSMQQSLTVLVPRVWPF
LRHTISSVRRAALETLFTLLSKADQSCALWLNQVLQDMLRHIFQSCILESNQEILDLIQK
VWTELLRQAPQQYVVAASCPWMGAWLCLMMQASHIPIDINMLLEVKSRCKEKAGGKPRQG
ALVQVKETVQEYIAGTETVTEDPMTRDYVVTRARLMAAKLLGALCRCICDPQLNSSSQDI
RPAESLGQLLLFHLNSKSALQRIAVALVLCEWAAVQKECQVVSAMVQPRLLAILSEQLYY
DEIAIPFTRMQNECKQLIALLADAQIDVRDRLNCSVFTIDQANELVTTIFAESTVGLDMK
SKQFQPLDSKRQQAQSTVGETGVEWQQLHLRVHMFTACAVVNLQALPDKLNPVVRPLMEA
AKREENTLVQGYAASFIAKLLQQCAGRQPCPNSKIVKNLCSSVCVDPLLTPSAACPVPPI
QETARAGMSEKECMHHMVNKTKGIITLYRHQRAAFVITSKRGPTPKTPKTPTTELPPGST
ITTDTDENKKPCLVQRRGAEFSLITVARHFGQELTGSLPYLWESVVGPLRAVVEDNQGID
GKLQLERGDAAAQELVNSLQVLEVTAGAMAPELKPLLLEHLPHLFTCLQHPYTAVRHMAA
RCVGVLSKIATMETMNLFLERVLPWLGCIEDGTKQEGAIEAMACVMEQLDVDIVPYIVLL
VVPVLGRMSDPSDSVRFMATQCFATLIRLLPLEAGIPDPPTMSDDLIRQKARERHFMEQL
LDSRKLENYKIPVPIKAELRKYQQDGVNWLSFLNKYKLHGILCDDMGLGKTLQSICILAG
DHYLRAQEYAKTKAADSTPLPSLVVCPPTLTGHWVDEVGKFCTKEYLNPLHYTGPPNERA
RLQHQVKKHNLIVASYDVVRNDIDFFRNVKFNYCILDEGHVIKNGKTKLSKAIKQLAANF
RVILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDAKSSSREQEAGVL
AMEALHRQVLPFLLRRMKKDVLQDLPPKIIQDYYCNLSPLQVQLYEDFAKSRAKVSVEDT
ISTASIHEEEKPKLKATGHVFQALQYLRKLCNHPSLVLLPQHPEYKRITDQLAAQHSSLR
DIQHSPKLSALKQLLLDCGLGSGGSAEGTEAVVAPHRVLIFCQLKSMLDIVEHDLLKPQL
PTVAYLRLDGSVPAGQRHAIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWN
PMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMSIANTVISQENASLQSM
GTDQLLNLFTLDKDGKDDKGESSSSGGKASIKNVLDGLGDLWDQQQYETEYNLDSFMHSL
H
NT seq
5586 nt
NT seq
+upstream
nt +downstream
nt
atggccgtgtcaaggcttgatcgtctattcatcctgcttgacactgggactactccggtg
acgaggaaggctgcagccatacagctgggagatgtggtcaaactccacccgcatgagctc
aacaaccttttgtcgaaggtgttgacgtacctgagaagtccaaactgggacacgcgtatc
gctgcgggtcaggcagtggaggccattgtgaagaatatcccagagtggaacccgtcaccc
aagcccaaagaagagtcgtgtgcagacttctccccagaagactcctcctctgaccggttg
agtttctaccgcttcgacatctcccgcctgctcaaacatggtgcttctctgctgggttct
gccggtgctgagtttgaggtccaagatgacaagtctggtgaggtggaccctaaagagcgt
ctggcccgccagaggaagctgctgcagaggaagcttggactggacatgggtgccgccatc
ggcatggacacgatggagctgttcaacgatgaggacctggacacccagtacacctgcacg
ctgagtggccctaagacccagggacagggagggaagggctctgaaccctgctccagtacc
ggcaaccacgtgcccatgcaggcagcagagataatagactcagagtttcgaccgggcatg
agcaaccgacagaagaacaaggctaagaggatggccaagctagtggcaaagcaacgatcc
agagacctggatcccaacgagagaagtaatgacagttttgagggggagcctgaggagaag
cgcaggaaaactactaacgtagtcattgatcaaccggcaacggagcataaagtcttaatt
gataacgttccagacaactccagtctcttggaagagacccaggagtggcccctggagagc
ttctgtgatgaactctgtaacgacctcttcaacccctcatgggagattcgacacggagca
ggcacaggcctcagggagatcctcaagtctcaaggtgctggaggagggaagctggtcgga
tgcactgcagaacagatggcgcggcaccaccaggagtggctggaggacgtggtcatccgg
ctgctctgtgtctttgctctggaccgttttggagattttgtctctgatgaggtggtggca
ccggttagagagacctgtgcccagacactgggcgtggccttgcgccacatgactgactgc
gccgttgccatgacagtagacatcctgctgaagctgctgacggaggaccagtgggaggtc
cggcacgggggtcttctgggcatcaagtatggcctggcagtccgacaggacctgatatcc
gctctgcttccacgggtgctccctgccatcacggaggggctacaggacctggatgatgat
gtcagagcggtggcggcctcggccctcatccctgtggtggatggcttagtgcagctactc
cccaacaaggtcccgttcatagtgaactccctgtgggacgctctcctggagctggatgac
ctgactgcctccaccaacagcatcatgaccctactgtcctctctgctcacttacccccaa
gtccgacagtgcagcatgcagcagtccctaacggtcctcgtccctcgggtctggccattc
cttagacacaccatatcatcagtcagacgggccgcactagagacccttttcaccctacta
tccaaagctgaccagagctgtgcattatggctcaaccaggtcctgcaagacatgctccga
cacatcttccagtcctgcatcttggagagcaatcaggagatcctggacctcatccaaaag
gtgtggacagagctgctgcgccaggcccctcagcagtacgtggtggcagccagctgtccc
tggatgggtgcctggctctgtctgatgatgcaagcctctcacatccccatagacatcaac
atgctgctggaagtcaagtctcgctgcaaggagaaggctggtgggaagcctcgccaggga
gccttggttcaggtgaaggagactgttcaggagtacatcgccggcacagaaactgtgacc
gaggacccaatgacgcgggactatgtggtgacacgggctcgactcatggccgccaaactg
ttgggggccctgtgtaggtgcatttgcgacccgcagctcaactcgtcctcccaggacatc
cggccggctgagtctctgggccagttgttgctcttccacctcaactccaagtctgccctg
cagcgcatcgctgtggccctggtcctctgtgagtgggccgccgtgcagaaggagtgtcag
gtggtgtcagccatggtccagcctcgcctgttagccatcctgtcagagcagctgtactat
gatgagatcgccattcccttcacacgcatgcagaacgagtgtaagcagctcatcgccctg
ctggccgacgctcagatcgacgtgcgcgaccgcctcaactgcagcgtgttcactatcgac
caggccaacgaactggtgaccaccatcttcgcagagtccaccgtgggtctggatatgaag
tccaaacagtttcagccactggacagcaagcgtcagcaggcccagtccacggtgggcgag
accggtgtagagtggcagcagctgcacctgcgtgtccacatgtttaccgcctgcgccgtg
gtcaacctgcaggcgctaccagacaagctgaacccggtggtgcgtccgctgatggaggcg
gctaagcgggaggagaacaccctggttcagggctacgccgcctccttcatcgccaagctg
ctgcagcagtgtgctggtaggcagccatgtcccaattccaagatcgtcaagaacctgtgt
tcgtcggtctgtgtggaccccctgctcacgccctccgcggcctgccccgtgccccccatt
caggagactgctagagctggcatgtcggagaaagaatgcatgcaccacatggtcaataag
actaagggcatcatcaccctgtaccgccaccagagggcagcattcgtcatcaccagcaag
aggggccctacccccaaaacccccaagacccccaccactgaactgccacccggcagcacc
atcaccacagacactgatgagaataaaaagccatgtctcgtccagagaagaggggccgag
ttctccctgataacggttgccaggcactttggccaggagctgacggggtcactgccatac
ctctgggagtctgtggtgggacctttgagggccgtggtggaggacaaccaaggcatcgat
gggaagctccagctggagaggggggatgctgcggcccaggagctggtcaactctctgcag
gtgctggaggtcacggctggggccatggcccccgagctcaaacctctgttgttggagcac
ctgccccacctgttcacctgtctgcagcacccgtacacggccgtgcgtcacatggcggcg
cgctgcgttggcgtgctcagtaagatcgctaccatggagaccatgaacctgttcctggag
cgcgtgctgccctggctggggtgcatcgaggatggcactaagcaggagggggccatcgag
gccatggcctgtgtgatggagcagttggatgtggacatcgtgccgtacattgtgctgctg
gtggtgccggtgctgggccgcatgagtgaccccagtgacagtgtccgtttcatggccacg
cagtgcttcgccaccctcatccgcctgctgccacttgaggcgggtatcccggatcctccc
accatgtcggatgatctgattcgccagaaggccagagagcgtcacttcatggagcagctg
ctggacagcaggaagttggagaactacaagatccctgtgcccatcaaggctgagctccgc
aagtatcagcaggacggagtgaactggctgtccttcctgaacaagtacaagctgcatggt
atcctgtgtgacgacatgggcctgggcaagaccctgcagtccatctgcatccttgctggg
gaccactacctcagggcgcaggagtatgccaagaccaaggcagcagacagcacccccctg
ccctctctggtggtgtgcccccccaccctgacgggccactgggtggacgaggtgggcaag
ttctgcaccaaagagtacctgaaccccctgcactacacaggaccccccaacgagcgagca
cggttacagcatcaagtgaaaaagcacaacctaatagttgcctcgtacgatgttgtacga
aacgacattgacttttttaggaatgtaaaattcaactactgtatccttgacgagggccat
gtgatcaagaacgggaagaccaagctctccaaggccatcaagcagttggcagccaacttc
cgagtcatcctatcaggaacgcccatccagaataatgttctggagctgtggtcgctcttt
gacttcctcatgcccggcttcctgggcacagagcgccagtttgctgcccgctacggcaag
cccatcctggccagccgtgacgccaagagctcgtcacgcgagcaagaggccggggtgctg
gccatggaggcgctgcatcgccaggtgctgcctttcctcttgaggagaatgaagaaggac
gtgctgcaggacctgccccccaagatcatccaggactactactgcaacctcagccctcta
caggttcagctgtatgaggactttgccaagtcccgggccaaggtcagtgtggaggacacc
atctctacagcctccatccacgaggaggagaagcccaagttgaaggccacgggccacgtg
ttccaggctctgcagtacttgaggaagctgtgtaaccacccaagcctggtactgctgcca
cagcacccagagtacaagcgcatcacagaccagctggcagcccaacactccagcctccga
gacatccagcactcgcccaaactctcagccctcaaacagttgttgttggactgcggtctg
ggcagcggcggctcagcggagggcacagaggcggtggtggccccgcacagagtgctgatc
ttctgtcagctgaagagcatgctggacatcgtggagcacgacctcctcaagccccagctg
cccaccgtcgcctacctgcgtctggacggcagcgtcccggcgggccagcgccacgccatc
gtctccaggttcaacaacgacccctccattgatgtgctgctgctcaccacccatgtgggt
ggtctgggtctgaacctgaccggcgccgacacggtggtgtttgtggaacatgactggaac
cccatgagagacctacaggccatggaccgcgcccacaggataggacagaaacgcgtggtg
aacgtgtatcgtctgatcacgcgtggcaccctggaggagaagatcatgggcctgcagaag
ttcaagatgagcatcgccaacacggtcatcagccaggagaacgccagtctgcagagtatg
ggcaccgaccagctcctcaacctcttcaccctggacaaggatggtaaggatgataagggt
gagtcgtcatcctccggagggaaagcctccattaagaacgtgctggacggcctgggggac
ctgtgggaccagcagcagtacgaaaccgaatacaacctggacagcttcatgcactcgctc
cactaa
DBGET
integrated database retrieval system
