Coregonus clupeaformis (lake whitefish): 121553822
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Entry
121553822 CDS
T08357
Name
(RefSeq) transcription activator BRG1 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121553822
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121553822
03036 Chromosome and associated proteins [BR:
cclu03036
]
121553822
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
121553822
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
121553822
Chromatin remodeling factors
BAF complex
121553822
PBAF complex
121553822
GBAF(ncBAF) complex
121553822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
DEAD
HDA2-3
Motif
Other DBs
NCBI-GeneID:
121553822
NCBI-ProteinID:
XP_041723133
LinkDB
All DBs
Position
38:complement(5607955..5632175)
Genome browser
AA seq
1735 aa
AA seq
DB search
MSTPDPPMGGTPRPGPSPGPGPSPGAMLGPSPGPSPGGSSHSMMGPSSGPPSSGQPLPQP
GPSGYSQENMHPLHKPLEGMERTAMERTGIERTGMERSAMERTGMERTGMERTGMERTGM
HEKGMSEESRFAQMKGMPMRQGGHSGMGPPPSPMDQHSQGYHSPLGGSDHSSPVPSNGPP
SVPLQPSSAVPGSGLNPSDTSSNPDSQTLGAQNQQQNRPGGPQQSGSGPGPHGPSPGPTT
PGGPGGGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMGCSPGMQGLGP
GQGGLGQPMPSLAPGGPGGVGPGGPGQGPGGSMGQGYSRAHGMMGPNMPPPGPSGPTGMQ
GQNPNGPPKSWSEGPMVNAAAPSNAPQKLIPPQPTGRPSPAPPSIPPAASPVMPPQTQSP
GQPVQPPPMVPHHAKQNRITPIQKPHGLDPVEILQEREYRLQARITHRIAELENLPGSLA
GDLRTKATIELKALQLLNFQRQLRQEVVVCMRRDTALETALDAKAYKRSKRQSLREARIT
EKLEKQQKIEQERKRRQKHQEYLSIILAHAKDFKEYHRSITAKIQKATKAVATYHANTER
EQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRAHKL
VQALKEKKKKKKKKKKLENAEGQTPVLGPDGEPLDETSQMSDLPVKVIHVDSGNILTGVD
APKAGQLDTWLEMNPGYEVAPRSDSEDSGSEEEEEEEEEPQPAVPPVVVLPGLVGLEEKK
KKIPDPDIEEVSEVDVRHIIEHAKQDVDDEYNSAEAAFARGLQSYYAVAHAVTERVEKQS
TILINGQLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMENKRVNGPF
LIIVPLSTLSNWVYEFDKWAPSVVKVSYKGSPQARRAFIPQLRSGKFNVLLTTYEYIIKD
KQVLAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYLAPRRVLLTGTPLQNKLPELWALLN
FLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEA
QLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKIC
NHPYMFQQIEESFSEHLGFSGGIVSGLDLYRASGKFEVLDRILPKLRATNHKVLLFCQMT
SLMTIMEDYFTYRNFKHLRLDGTTKAEDRGMLLKAFNDPASQYFIFLLSTRAGGLGLNLQ
SADTVVIFDSDWNPHQDLQAQDRAHRIGQLNEVRVLRLCTVNSVEEKILAAAKYKLNVDQ
KVIQAGMFDQKSSSHERRAFLQAILEHEEQDEVGAPGGVWKSGGPWVDRQYVVEEDEVPD
DETVNQMIARSEEEFDHFMRMDLDRRREDARNPRRKPRLMEEDELPTWIMKDDAEVERLT
CEEEEEKMFGRGSRQRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRHKKTTRKRKRDRD
DLPGPSSSSSGGRRSRDKDEDGKRQKKRGRPPAEKLSPNPPALTKKMKKIVDAVIKYKDS
SNGRQLSEVFIQLPSRKELPEYYELIRKPVDFRKIKERIRSHRYRSLGDLERDVMLLFQN
AQTFNLEGSLIYEDSIVLQSVFTSLRQKIEKEEDSEGEDSEEEEEDLDEGSESESRSVKV
KIRLGRREKSSDRGKGRRRMGRTRARPVVSDDDTEEEQEEVRGEERSPSGTDEES
NT seq
5208 nt
NT seq
+upstream
nt +downstream
nt
atgtccactccagaccctcccatgggaggtacccctcgaccgggtccttccccaggcccg
gggccctctcctggggcgatgcttggccccagccctggtccttctccaggggggtcctct
cacagcatgatggggcccagctcagggcctccatcctcaggtcagcccctgcctcagcct
gggccctctggatactcccaggagaacatgcaccctctgcacaaaccactggaaggtatg
gagagaactgccatggagagaactggtatagagaggactggtatggaaaggtctgccatg
gagagaactggtatggagagaactggtatggaaaggactggtatggaacggactggtatg
catgagaaaggcatgagtgaggagtcccgctttgcccagatgaagggcatgcccatgaga
cagggagggcacagtggcatgggccctcctcccagccccatggaccaacactctcaaggc
taccactccccactcggcggctctgaccactccagccccgtcccttccaacgggcccccc
tctgtccctctacaaccctctagcgctgtccccgggtctggcctaaacccctcagacacc
tcctccaacccggactcccaaaccctgggggcccagaaccagcagcagaaccggcccggt
gggccccagcaaagtggctccggacctggccctcatggtcccagccctggtcccaccacc
cctggtggccccggaggaggccctactcctttcaaccagaaccagcttcaccagctgcgg
gcccagatcatggcctataagatgctggccagggggcaaccactaccagaccacctccag
atggctgtccaggggaagaggcccatggggtgcagcccagggatgcaggggctggggccg
gggcaggggggactggggcagcccatgcccagcctggctcctggaggtcctggaggtgtg
gggccaggggggccaggacaaggaccaggaggatccatgggccagggctacagcagagct
catgggatgatgggacccaacatgcctccaccaggcccctctggtccaacaggcatgcag
ggacagaaccccaacggaccccccaagtcctggtctgaaggtccgatggtgaacgccgcc
gccccctccaacgccccccagaagttgatccctccccagccgacgggccgtccctcccct
gctccaccctccataccccccgcagcctccccggtcatgcccccccagacccagtcccct
gggcagccggtccagcccccgcccatggtgccccaccatgccaagcagaaccgcatcacc
cccatccagaaaccccacggactcgacccggtggaaatactgcaggagagggagtacaga
ctgcaggctcgtatcacccatcgtatagctgagttggagaacctccctggctctctggct
ggagacctgaggaccaaggccaccatcgaactcaaggccctccagctgctcaacttccag
agacagctgcgtcaggaggtagtggtgtgtatgcgtagggacacggctctggagacagct
ctggacgctaaggcgtacaagaggagcaagcgccagtccctacgagaggcccgcatcaca
gagaaactggagaaacagcagaagatcgaacaggagcgcaaacgtcgacagaaacaccag
gagtatctgagcattatcctggcccacgccaaagactttaaggagtaccaccgctccatc
acagctaagatccagaaagccaccaaggccgtggccacgtaccacgccaacacggagcgc
gagcagaagaaggagaacgaacgcatcgagaaggagaggatgaggaggctgatggctgag
gatgaggagggctaccgtaagctgattgaccagaagaaggacaagcgtctggcctacctg
ctgcagcagacggatgagtacgtggccaacctcactgagttggtccgggctcacaagctg
gtacaggccctcaaagagaagaagaagaagaagaaaaagaagaagaagctggagaacgct
gagggccagactcctgtactgggacctgatggagagcctctagatgagacgtcccagatg
agtgacctaccagtgaaggtgatccacgtggacagtggtaacatcctgacaggggtggac
gctcctaaagctggacagctggacacatggctggagatgaaccctgggtacgaggtggcc
cctcgctctgacagtgaagacagtggatcggaagaggaggaggaggaagaggaggagccc
cagccggcggtgcctccagtagtggtcctcccagggttagtggggttagaggagaagaag
aagaagatcccagacccagacattgaagaagtatcagaggtggacgtacgacacatcata
gagcacgctaaacaggatgtggatgatgagtataacagtgcagaggcagcgttcgctcgg
ggactccagtcttactacgctgtggcccatgctgtcactgagagagtggagaaacagtcc
actatactcatcaacggacaactgaaacagtaccagattaaaggtctggagtggctggtg
tctctctacaacaacaatctgaacggtatcctggctgatgagatgggcctgggaaagacc
atccagaccatcgctctcatcacgtacctgatggagaacaagcgagtcaacggacctttc
ctcatcatagttccgttgtcaactctctctaactgggtgtatgagtttgacaagtgggct
ccgtctgtagtgaaggtctcctacaagggttcccctcaggccagaagggccttcattccc
cagctacgcagcggcaagttcaacgttctcctcactacctatgagtacatcatcaaggat
aaacaggtcctagccaagatccggtggaagtacatgatcgtggacgagggccaccggatg
aaaaaccaccactgtaagctaacccaggtcctcaacacccactacctggcccccaggaga
gtgctcctaactgggacaccgctccagaacaagctgcctgagctctgggccctgctcaac
tttctcctgcccaccatctttaagagctgcagtaccttcgaacagtggttcaatgcaccc
ttcgctatgactggagagaaggtggatctaaatgaagaggagaccatcctgattatccgt
cgcctccacaaggtgctccgccccttcctgttacgcaggctcaagaaggaagtagaggct
cagctaccggaaaaggtggagtatgtgataaagtgtgatatgtcagcgctccagagggtt
ctgtacagacatatgcaggccaaaggagtcctactgacagacggctctgagaaggacaag
aagggcaaaggaggcaccaagactctcatgaacaccatcatgcagctgaggaagatctgt
aaccatccctacatgttccaacagatagaggaatctttctcagagcatttaggattttcc
ggagggatagtgagtggtcttgatctgtaccgagcctcagggaagtttgaggtgctggac
cgtatcctgcccaagctgagggccaccaaccacaaggtgttgttgttctgtcagatgacc
tccctcatgaccatcatggaggactacttcacctaccgcaacttcaagcacctgcgtctg
gacggcaccaccaaagcagaggacaggggcatgctgttgaaggcgtttaacgacccggcc
tcccagtacttcatcttcctgctcagtaccagagccggggggctgggcctcaacctgcag
tcagctgacaccgtggtcatcttcgactctgactggaaccctcaccaggacctgcaggcc
caggaccgtgcgcaccgcattggccaactgaacgaggtccgcgtcctgcgtctctgcacc
gtcaactccgtagaggagaagatcctggccgcagccaagtacaaactcaacgtggaccag
aaggtcatccaggctggcatgtttgaccagaagtcatcaagccacgagcgccgggctttc
ctgcaggctatcctggagcacgaggaacaggacgaggtcggggccccggggggggtgtgg
aagtctggggggccttgggtggacagacaatatgtagtggaggaggacgaggtgccagac
gatgagacggtcaaccagatgatcgccaggagcgaggaggagtttgaccacttcatgcgt
atggacctggacaggcggcgtgaggacgctcgtaacccccgccgtaagccccgtctgatg
gaggaggacgagctgcccacctggatcatgaaggatgacgcggaggtggagagactcacc
tgtgaggaggaggaggagaagatgttcgggagggggtcccgccagcgcaaggaggtggac
tacagcgactcactcaccgagaagcagtggctcaaggccattgaggaaggtacattagag
gagatcgaggaggaggtgcgtcacaagaagaccacccggaagcgaaagcgtgaccgcgat
gacctccctggcccctcctcttcctcctcggggggcaggcggagccgggacaaggacgag
gacgggaagagacagaagaaaaggggacgcccccccgcagagaaactctcccccaacccc
cccgctctcaccaagaagatgaagaagatagtggacgctgttattaaatacaaggacagt
agtaatggtcgtcagctaagtgaggtcttcatccagctgccctcacgcaaagagctgcca
gagtactacgagctcatccgcaagcctgtcgacttcaggaaaatcaaggagaggattcgt
agccacagataccgtagtctaggagacctggagagagatgtgatgctactctttcagaac
gcacagaccttcaacctggagggatcactgatctacgaggactccatcgtgctccagtca
gtgttcaccagtctgagacagaagatcgagaaggaggaggacagcgagggagaggacagt
gaggaagaggaggaggacctggacgaaggctctgagtcagagtcccgctcggtgaaagtg
aagatccgtctgggacggagagagaagagcagtgaccgggggaagggtcggagacgtatg
ggacgcacccgagccagacctgtagtcagcgacgacgacactgaagaggagcaggaagag
gtgagaggagaggagcgctcccccagtggcactgatgaagaatcctaa
DBGET
integrated database retrieval system
