Coregonus clupeaformis (lake whitefish): 121553829
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Entry
121553829 CDS
T08357
Symbol
slx4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X1
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
121553829 (slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121553829 (slx4)
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121553829 (slx4)
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
121553829 (slx4)
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
121553829 (slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-met
zf-C2H2_jaz
zf-C2H2_6
zf-C2H2
Zn-C2H2_12
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
121553829
NCBI-ProteinID:
XP_041723147
LinkDB
All DBs
Position
38:4751642..4768515
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AA seq
2046 aa
AA seq
DB search
MDDSDQDFVDLCSKLLKRVRRKAGETEKRSVAEPSSQDTAKYIPTKRVTTRRKKKDVGPS
SMGALGNNSEHVSSISTACDEPIPLPSNTDESKQAVVNGGIGLGGGENGSSVAVDVDGSR
PEDKGMGVKEKVLHRMQQFKRVNPQKLVHGERNQPAATGSESDSAAPYPLQGNQAPSTSA
STPLPLDPQMDDSDEALALRLQEELDREAQAVAHGRAVDLEQGGLFFCQLCQKDLSAMSP
TGRTQHINRCLDESEDSAPRAAPAPRVPECPICGKRFKSQKSRAAHLKRCSSTMGVAPAV
LLQAVQRQAAEAAGSLTDSTANQPPQAGGAKRKGSTDPSLPGRKKPRKKPRCLDEDTMVA
MALSHSLLEKEKEMERDMQREIQRETEREGGQQLPALLPLSPLKWRAEPSKTSKGRGKRK
KGAPPRPPPLLLVQDSETALSRLQERVAALLLHTRAPSPPTPTRCPSTLPSCSAAPLWQK
SALRDGGPKVISEFYTPELREFIQPWVSVKMDMVSPTKAMPVSSTNPSIIEGISMTKQPI
PSSKRPVPSTQAAPSSLPSTPGTGHLPVGSQTLCDLIELADEGMTLTQWGYSSPGPARDK
ESTATDFHLSGFVPESTDEPPDLCVSGFIPESIRNTESHQRRSVPQSRDTNRSNQKSVAL
SRLASDLTSMVNNPQFSDVQLQVDSGEVYFTHSFMLYARCPLLAQMVHDSGFGVQEEAMP
SAQRVLLGEVPGQAVYTLLQYIYTAHCPLTPTLLPHVQELASRFDLEELQQLCQLYPAQT
DIHRGVEGQGDPWGDYPAQEHQSGGEEEHRDQVFMELLRSMWNEEVVEEDEGRAEEGEIA
MEGEGRGDGVTIEDGETNEERVNEEEMEEIYEFAATQRKRDEGKETEKEESEDEEGGVTF
FTETEEEQEAPIQAHSLAEHSDRTELTRMISLQTKLPSLEAAIAMGDIDTDRESPNRIRT
DLNKSEGRDPECSRTATMESDRTKQFESNVTSSRSVGEVSTNKSLHPSPHDDQELITSLD
RSYSRLFSDSWGVYETQEEPHTSPPTPPSCHSQPPRASHKLSRSQPPRTMVEEDARQPEP
TSPPPLSSRSQPTRVKVDGGTRPTAIPTFQYSASEIIDLSISPPLVPAVSALPVPGLSPG
EMTDIGAGGRTEGVVGGGKVPVCKELFQEKIPSNPEDIERESHGLYSISVPLSPPHSTKE
EPELIVLSDSSEEMEVGDLAPTSPSPPPPPRLSQNHQGYTRIRTQSNTEPNKPTSRTQSD
TEPKKPSSKEKETSSCSVRVPSVSSSDQGLDPDPPGYKPGSTLGSAGSTSPMDCSAEMSW
LIPATPPMPSKRTNTSSTQTYSSMRRTQLFPKANSSSSSSAASVFSSPTLPFRPSLQTST
TSNPPRVSTYSAQTESSISRQKSDNSGPRHSSLGLDHDDRSSQKYNSGSFGSDRAARSPV
FTVPSQSQSKRCRLPRLTPSLSFIPPPDASTKGTPLHNVPQPYSSTPLHSDLPKPSAPSL
ASMASPLLRDGAGEGDSGTRQKGRELGFSGSPWKRGGLGSLHLSLSDPSDPSSSPHKESL
TQPREKNGSPGQRRPSTEAKYFHSPGDRETEGEKERGVREESDERMEIEELERSVVKEEE
QEEEIEKREGEDMERSTNSFQQSFLGMDEPPMAFDDSWGLNAGGGDTDGERSQDVCFSLR
MESSGGGASPPRQGRRDGEVAGPSSTFTPSPPKTHTSHSFSTPSPPPPNTTTPQANAEIN
ASLLDAKIWDDWGEEEALPLSQRVNAVALAQRVAQLKTPVASRRKGQQGPLVPITPMPSY
SDMDTPDLKNKLNRFGVRPLPKRQMILKLKEIHQYTHQVISSESEDEAPSLGRPRAVGPL
PTTTSMEPTRKPVSCAQTGGFKEPSERAAPTVSLVKLPGGEEDMEPLSASQGSNKSSTAP
SEDSERSNPEQCLSDDSDNDDITSSQSASKLQDSLVAVRRFIQSDPHLYGQILHYQPLVL
SDLQARLKAAGIRLGAAKLLDYLDSQCITFTTARPGLRGGRKRRGKGVTRAGGRGRGGRG
VAKTAD
NT seq
6141 nt
NT seq
+upstream
nt +downstream
nt
atggacgactcagatcaagacttcgtagacctctgctccaagttgctcaaacgagtccgc
aggaaagcaggcgaaaccgagaagagaagtgttgcagagccctcgtcccaggacactgcg
aaatacatacccaccaaaagggtgacgactaggaggaagaagaaagatgttggcccaagt
tccatgggagctttgggtaacaactctgaacacgtttcctccatctctaccgcttgtgat
gaaccaatcccacttccctccaatacagacgaatctaaacaagcagtggtcaatggagga
attggacttggtggaggagagaatgggtcatcagtggctgtggatgttgatgggtctcga
cctgaggataagggaatgggggtgaaggagaaagtgctacacaggatgcagcagttcaag
agagtcaatccacagaagctggtgcatggtgagaggaatcagcctgcagcaacagggagt
gaaagtgacagtgctgctccctatccactgcaaggtaatcaagctccatccacctccgcc
tccactcccctaccgctggacccccagatggatgattcggatgaggccctggccctgcgt
ctacaggaggagctggacagggaggcccaggctgtggcccacggtagggcagtggaccta
gagcagggtggcctgttcttctgtcagctctgccagaaggacctatctgccatgagcccc
acaggacgcacccagcacatcaacaggtgtctagacgagagtgaggacagtgccccccgt
gctgcccccgctccccgcgtcccagagtgccccatctgtggtaaacggttcaagtcccag
aagagtcgcgcggcccacctgaagcgctgctcctccacgatgggcgtggctcctgccgtg
ctgctgcaggctgtacagagacaggctgccgaggctgcagggagcctgactgacagcacc
gccaaccaacctccgcaggccggaggcgccaagcgtaaaggctccacagaccccagcctc
ccgggcaggaagaagcccagaaagaagccccgttgcctagacgaagacaccatggtggcc
atggccctgtcccactccctcctggagaaggagaaagagatggagcgggatatgcagaga
gagatacagagggagacagagagagaagggggtcagcagctcccagccctcctccctctt
tcaccattgaagtggagagctgaaccaagtaagacaagtaaggggcgtggcaagaggaaa
aagggggcaccccctcgcccccctcccctcctcctggtccaggactcggagacagccctg
agtcgactacaggagcgtgtggctgccctcctcctccatacccgcgccccctcgccgcca
acccccacacgctgccccagcaccctgccctcctgcagcgctgcccccctctggcagaag
agtgcgttgcgggacggagggccaaaggtcatctctgagttctacaccccagagctcaga
gagtttatacagccttgggtgtctgtaaagatggatatggtgtctcccaccaaggccatg
ccagtatcctccaccaacccttccataatagaaggcatctctatgaccaagcaacctatc
ccctcctccaaacgaccagtcccctccacccaggcagccccctcttcgctcccttccacc
ccagggacagggcaccttccagtgggcagccagactctgtgtgacctgatagagctggct
gatgagggaatgaccctcacacagtggggctactcttccccaggacctgccagagataaa
gagagcactgctacagacttccacctaagtggctttgttcctgagagcacagacgaaccc
cctgacctgtgtgtcagtggcttcatcccagagagcattagaaacactgaaagccatcaa
aggagatctgttcctcaaagcagagacaccaacaggagcaaccagaaatcagtggcgctg
tccaggctggcctcagacctgaccagtatggtgaacaacccccagttcagtgatgtccag
ctacaggtggacagtggggaggtgtacttcacccattcattcatgctgtacgctcgatgc
cccctgctggcgcagatggtccatgacagtggattcggggtgcaggaggaggccatgccc
tcagcccagagggtgttgttgggtgaggtaccaggccaggctgtgtataccctgctccag
tacatctacacagcccactgccccctcacacccaccctgctgccacacgtacaggagctg
gcatccaggttcgacctggaggagctgcagcagctgtgccagctctacccagctcagaca
gacatccacagaggtgtagagggacagggggatccgtggggagactacccagcccaggag
catcaatctgggggagaggaggagcaccgagaccaggtcttcatggagctcctccgctct
atgtggaacgaagaggttgttgaggaagatgagggcagagcagaggaaggagagatagcg
atggagggggaggggcgaggggatggcgtgacgatagaagacggagagacgaacgaagaa
agggtgaacgaagaagagatggaggagatatatgagtttgccgccactcagagaaagagg
gatgaagggaaagagactgaaaaggaagaatcagaggatgaggagggaggagtgacattt
ttcacagagacagaagaagagcaggaggctccaatccaagctcactcattggctgaacac
tcagataggactgaattaacacgcatgatatcccttcaaacaaaactgcccagtttggag
gcagccatagctatgggtgacattgacacagacagggagagtccaaataggataagaact
gatctcaacaaatcagaaggtagagatccagaatgttctagaacagccaccatggaatca
gacagaacaaaacaatttgaatcaaacgtcacaagctcaagaagtgtcggagaggtatct
acaaataaaagcctccaccccagcccccatgacgatcaggagctaatcaccagtctggac
cgtagctacagccgcctcttctctgactcctggggggtctatgagacgcaggaggagccc
cacacctccccaccaacacccccatcctgccactcccaaccccccagggctagccacaaa
ctctcccgctcccagccccccaggaccatggtagaggaggatgcgagacagccagagccc
acctccccacccccactgtcctcccgctcccagcccacaagggtgaaggtcgatgggggt
acgagaccgacagcgatccctaccttccagtactcagccagtgaaatcattgacctctcc
attagtcctcctctggtccctgctgtatccgccctacctgttcctggtttgtctccaggg
gaaatgactgatatcggggcaggaggaaggacggagggggtggttggaggagggaaagtt
cctgtgtgtaaggagttattccaagagaagataccatctaatccagaggatatagagaga
gagagtcatggtctttacagtatttctgtacccctctcccctcctcacagtaccaaagaa
gaacctgagcttatagttctgtctgactctagtgaagagatggaggtaggggatctagca
cctaccagcccctctccaccaccccctcctcgtctctcccagaaccaccaaggctacacc
cgaatcagaactcaatccaacacagaacccaataaacccacctcaagaacccaatcagac
acagaacctaagaaacccagctcgaaggagaaagagactagtagttgttctgtgagggtt
ccttctgtctcatcttcagatcaaggcctagatccagatcctcctggttataaaccaggt
tctactcttggttctgctggttctactagtcccatggactgttctgcagagatgtcttgg
ctcatcccggccactccgcccatgccatccaagaggaccaacaccagctctacccagacc
tatagtagcatgcgtcgcactcagctctttcctaaggctaactcctcttcctcctcttct
gcagcatcagttttctcctctcccaccctccctttcaggcctagccttcagacctccacc
acctccaacccgcccagggtttctacatattctgcccagacagagtcctctatttctagg
cagaaatcagacaacagtgggccacggcactccagcttgggtctcgaccatgacgaccgc
tcttcccagaaatacaacagtggttcattcgggtctgaccgtgctgcccgctcccctgta
ttcacggtcccctcccagtcccaatcaaaacgctgccgcctcccccgcctgaccccctct
ctctccttcatccctccaccagacgcctccaccaagggtacccctctccacaacgtcccc
cagccttacagctccactccccttcattcagatctacccaagccctccgctccgtctctg
gcctccatggcctcccctcttctgagagacggtgcaggggagggggacagcggaaccagg
cagaaagggagggagctggggttctctgggagcccatggaagagagggggactggggtct
ctgcacctgtccctctcggacccttccgacccctcctcgtccccacataaggagtccctt
acccaaccgagagagaagaacggctcccccggacaacgccgaccatccaccgaggctaaa
tacttccacagcccaggagatagagagacggagggagagaaagagaggggggtgagagag
gaatcggatgagaggatggaaatagaggaactggaaaggagtgtagtgaaggaggaagag
caggaggaagagatagaaaaaagagaaggagaagatatggagaggtccactaacagcttt
caacagagcttcctcgggatggacgagcctcccatggccttcgatgactcctggggccta
aacgcaggaggaggggacacggacggagaacgatcccaggacgtgtgcttcagtctgagg
atggagagcagcggcggtggggctagtcctccaagacagggccggagagatggagaggtt
gcaggaccatcctctacttttaccccctctcctcctaaaacccacaccagccactctttc
tccaccccctctccacctccacccaacaccactacgccccaggccaacgcagagatcaac
gctagcctcctggacgctaagatctgggacgactggggggaggaggaggctcttcctctc
tctcagagggtgaatgctgtagctctggctcaaagagtggcccagctcaagactccagtg
gcgtcccgtaggaaaggccagcagggccccctggtccccatcacccccatgcccagctac
tctgacatggacacacctgatctcaagaacaagctcaatagattcggtgtgcgtccctta
cccaagcgccagatgatcctgaagctcaaggagatccaccagtacacccaccaggtcatc
agttcagagtccgaggatgaggcaccttccctgggtcgccccagagccgtcgggccccta
cccaccaccacctccatggagcccaccagaaagccagtgtcctgtgcccagactgggggg
tttaaagagcctagtgaaagagcagcacctaccgtctccctggtgaaactgcctggtggg
gaggaggacatggagcctctctctgcctctcagggatccaataagtcctccacagcaccc
agtgaagactctgagaggtctaatccagagcagtgtctctctgatgactcagataacgac
gacattacttcctcgcagtctgcctccaagctccaggacagcctcgtcgctgtccgtcgt
ttcatccagtcagaccctcacctctacgggcagatcctccactaccagcccctggtcctg
tcagacctccaggccagactcaaggccgcaggtatccggctgggggcagccaagctacta
gactacctggattcccagtgcattacgtttaccacagccaggcctggactgaggggaggg
agaaagaggagagggaagggggtgaccagggctggagggaggggaaggggagggagaggg
gtagctaaaacagcagattga
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