Coregonus clupeaformis (lake whitefish): 121553842 Help Entry 121553842         CDS       T08357                                  Symbol atg4da Name (RefSeq) cysteine protease ATG4D   KO K08342   cysteine protease ATG4 [EC:3.4.22.-] Organism cclu  Coregonus clupeaformis (lake whitefish) Pathway cclu04136   Autophagy - other cclu04140   Autophagy - animal Brite KEGG Orthology (KO) [BR:cclu00001]  09140 Cellular Processes   09141 Transport and catabolism    04140 Autophagy - animal     121553842 (atg4da)    04136 Autophagy - other     121553842 (atg4da)  09180 Brite Hierarchies   09181 Protein families: metabolism    01002 Peptidases and inhibitors [BR:cclu01002]     121553842 (atg4da)   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:cclu04131]     121553842 (atg4da)    03029 Mitochondrial biogenesis [BR:cclu03029]     121553842 (atg4da) Peptidases and inhibitors [BR:cclu01002]  Cysteine peptidases   Family C54: Aut2 peptidase family    121553842 (atg4da) Membrane trafficking [BR:cclu04131]  Autophagy   Autophagosome formation proteins    Atg8 conjugation proteins     121553842 (atg4da) Mitochondrial biogenesis [BR:cclu03029]  Mitochondrial quality control factors   Mitophagy factors    Autophagy-related proteins     121553842 (atg4da) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Peptidase_C54 NHS Motif Other DBs NCBI-GeneID:  121553842 NCBI-ProteinID:  XP_045067670 LinkDB All DBs Position 38:complement(5638701..5647312) Genome browser AA seq 518 aa AA seqDB search MNSVSPSAVQYVGGVGVVGQDDTLQREETKRPQQPQLVDPGGGCSFGNRQGTDVGGGGTR EATTAGEPDEVDKLKTKLMSAWNNVKYGWSVKSKTTFNKSSPVTVMGHSYLLNSEDAVEW FRRAFVSRLWLTYRREFPQLEGSTLTTDCGWGCMLRSGQMLLAQGLLVHLMPPDWSWPDV QQFADVDFEALRPRSPSRAGGVPIPSFGYSSSSRTPTTPQKTSMPGVTALNHNQKKRPES GRDRQAEPLHRRIVAWFGDEPPAPFGVHQLVELGKSSGKKAGDWYGPSVVAHILRKAVAK TSEVHNLAVYVAQDCTVYKKDVVHLCDQSLNQSILDPEASGPGWKSVIILVPVRLGGDSL NPSYIQCVRNILRLECCIGIIGGKPKHSLFFIGCQDEQLLYLDPHYCQAVVDVTQDNFPL ESFHCSSPRKMPFSRMDPSCTIGFYAKNKKDFESLCSAVCVALSSSDEKYPIFTFVEGQA QDYGLVGHSSSHGTAHILPQGKLSRSNNIGSSDEFVFL NT seq 1557 nt NT seq  +upstreamnt  +downstreamnt atgaactcagtgtctcccagtgcagttcagtatgtggggggagtaggagtggtgggtcag gatgacaccctccagagagaggagaccaagaggccacagcagccccagctggtggaccct ggcggaggatgtagctttgggaaccggcagggtactgatgtcggtgggggtggaaccagg gaggccaccaccgccggagagccagacgaggttgacaaactcaagaccaagctgatgtcg gcgtggaataacgtcaaatacggctggtcggtgaagtcgaagaccacattcaacaagagc tctccggtgactgtaatgggccactcctatctgctcaatagtgaagatgcggtggagtgg ttcaggcgggcgttcgtgtctcggctgtggctgacctaccgtagggagttcccccagctg gagggctccaccctgactacagactgtggctggggctgtatgctgcggagcggacagatg ctgctggcccagggcctactggtacatctgatgccaccagactggtcgtggccagacgtc cagcagttcgccgacgtggactttgaggctctgagaccccgctccccatcccgcgctggg ggcgtacccatcccctccttcggctactcctcctcctcgcggacccccaccacgccccag aagacctccatgccaggggtcacggctctcaaccataaccagaagaagaggcctgagtcg ggcagggacaggcaggctgagcccctccaccggaggattgtagcctggtttggggacgag cccccggccccgtttggggtgcaccagctggtagaattggggaagagctcggggaagaag gcaggggactggtacggcccctcagtagtggcacacatactacgaaaagcagtggccaag acttctgaggttcacaacctggctgtatatgtagcgcaggactgtaccgtgtacaaaaag gacgtggtgcatctgtgtgaccagtcgttgaaccagagtattttggatcctgaggccagt ggtccaggctggaagtctgtcatcatactggttccagtccgactaggaggagactctctc aacccctcctacatccagtgtgtcaggaacattctcaggttagaatgctgtatcggaatc atcggcggcaaacccaagcattcgctgttctttatcggctgccaagatgagcagctgctg tatctggaccctcactactgtcaggccgtggtggacgtcactcaagacaatttcccactg gagtcgttccactgtagctcacccaggaagatgcctttcagtcgcatggaccccagctgt actataggcttctacgccaagaacaagaaggactttgagtctctgtgttccgccgtctgt gtggccctatcgtcgtccgacgagaagtaccccatctttaccttcgtggagggccaggcc caggactatggactggtgggccacagctcctcccatggcaccgcccacatcctgccccaa ggcaagctcagcaggagcaacaacataggcagctctgacgaatttgtcttcctgtga

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