Coregonus clupeaformis (lake whitefish): 121554014
Help
Entry
121554014 CDS
T08357
Name
(RefSeq) transcription factor Sox-1a
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121554014
Transcription factors [BR:
cclu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
121554014
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
121554014
NCBI-ProteinID:
XP_041723387
LinkDB
All DBs
Position
23:complement(53890376..53892597)
Genome browser
AA seq
341 aa
AA seq
DB search
MYSMMMETDLQSPGPQTNTNVGQTGPNSGSKANQDRVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLSGAGGAGMGLGVGMGSSGVGQRLESPGGHGGSTSSGYAHMNGWANGAYSGQM
AAAAAAAAMMQEAQLVYSQHPGSGHHHHSHHHHHPHNPQPMHRYDMSALQYSPISNSEGY
MSTSPSGYGGITYTQHQSSGVSSSAAMGTLGSLVKSEPSVSPPVSTHSRGPCPGDLREMI
SMYLPTGEPGDPSVQSRLHALPQHYQSATAGVNGTVPLTHI
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggagacggacctccagtcccctggaccccaaacgaatacaaat
gtggggcaaacggggccgaacagtgggtccaaagcgaatcaggaccgggtgaagcgtccg
atgaacgcgttcatggtgtggtcccgcgggcagcggagaaagatggcccaggagaacccc
aaaatgcacaactccgagatcagcaagcggctgggagccgaatggaaggtgatgtccgag
gcggagaagagacctttcatcgacgaggcgaagcggttacgagcaatgcacatgaaggaa
cacccggattacaagtacagaccgagacggaagaccaagacgctgctgaaaaaggacaaa
tactctctggccggtggcctgctctctggggccggtggcgctggtatgggtctgggggtc
gggatgggttcatccggcgtcggccagaggttagagagccccgggggccacgggggctcc
accagctcaggctacgcgcacatgaatggctgggcgaacggtgcgtactcggggcagatg
gctgcagctgctgcggccgcggcgatgatgcaagaggcgcagctagtttacagccagcac
ccaggcagcgggcatcaccaccactcacaccaccaccaccacccgcacaacccccagccc
atgcaccgctacgacatgtcggcactccagtacagccccatctcgaactctgagggctac
atgagcacatctccgtccggctatggcgggatcacctacacgcagcaccagagctctggc
gtctcctcctcggctgccatgggcacgttagggtcgctggtgaagtcagagccgagcgta
agccctcccgttagcactcactccaggggcccttgccccggagacttgagagagatgata
agcatgtatttaccgaccggagagcccggggacccgtcggtgcaaagtagacttcacgca
ttgccgcagcattaccagagtgcgacggctggggtgaacggaacggttccattaacacat
atatag
DBGET
integrated database retrieval system
