Coregonus clupeaformis (lake whitefish): 121554047
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Entry
121554047 CDS
T08357
Symbol
zgc:136908
Name
(RefSeq) transitional endoplasmic reticulum ATPase isoform X1
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04137
Mitophagy - animal
cclu04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121554047 (zgc:136908)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
121554047 (zgc:136908)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121554047 (zgc:136908)
03009 Ribosome biogenesis [BR:
cclu03009
]
121554047 (zgc:136908)
04131 Membrane trafficking [BR:
cclu04131
]
121554047 (zgc:136908)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cclu04147
]
121554047 (zgc:136908)
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
121554047 (zgc:136908)
Ribosome biogenesis [BR:
cclu03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
121554047 (zgc:136908)
Membrane trafficking [BR:
cclu04131
]
SNARE
SNARE associated proteins
Others
121554047 (zgc:136908)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
121554047 (zgc:136908)
Exosome [BR:
cclu04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
121554047 (zgc:136908)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_5
CDC48_2
AAA_33
AAA_22
AAA_2
TIP49
RNA_helicase
AAA_14
NPHP3_N
AAA_28
nSTAND3
Vps4_C
ATPase
AAA_17
Mg_chelatase
Parvo_NS1
ATPase_2
AAA_18
AAA_7
IstB_IS21
ABC_tran
ResIII
AAA_24
DUF815
SLFN-g3_helicase
Sigma54_activat
TsaE
Viral_helicase1
NACHT
NB-ARC
Rad17
KAP_NTPase
Zot
Serglycin
Motif
Other DBs
NCBI-GeneID:
121554047
NCBI-ProteinID:
XP_045074707
LinkDB
All DBs
Position
Unknown
AA seq
804 aa
AA seq
DB search
MPASGGTDPKGEDFSTAILKQKHRPSRLVVDEAHNEDNSIVSLSQAKTEELQLFRGDTVV
LRGRKRRETVCIVLTDDTCPDERVRMNRVTRNNLRVRLGDVISVHACPDVKYGVRIHVLP
IDDTIEGLTGNLFDVFLKPYFLEAYRPVHKGDIFLVRGGMRAVEFKVVETDPAPHCIVAP
DTVIHCEGQPINREDEEESLNDVGYDDIGGCRKQLAQIKEMVELPLRHPGLFKAIGVKPP
RGILLYGPPGTGKTLVARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSP
AIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKQRTHVIVMAATNRPNSIDPALR
RFGRFDREIDIGIPDSTGRMEILQIHTKNMKLSDDVDLERVSMDAHGHVGSDLAALCSEA
ALQAIRKKMTLIDLEDDTIDAELLNSLAVTNDDFKWALGQSNPSALRETVVEVPNVSWED
IGGLGEVKRELQELVQYPVEYPDKFLKFGMTPSRGVLFYGPPGCGKTLLAKAIANECQAN
FISIKGPELLTMWFGESEANVRDVFDKARQAAPCILFFDELDSIAKSRGGGAGDAGGAAD
RVINQILTEMDGMSNKKNVFIIGATNRPDIIDSAILRPGRLDQLIYIPLPDTASRTAILN
ANLRKSPIARDVDLAYLSGITQGFSGADLTEICQRACKLAIREAIEAEIKAERQRQTHPG
TAMDEDSDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGNFRFPSGSQ
SGGQGSGSGSGGQFREEVEDDLYQ
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcctctggagggacagatcctaagggggaggatttctccactgctatcctgaag
cagaaacacagacccagcagactggtggtggacgaagcccacaatgaagacaacagcatt
gtcagcctctcacaggcgaagacagaggagctgcagttgttccgtggggacacagtggtc
ctgcgggggaggaagcgccgtgagacggtgtgtatcgtgttgacggacgacacctgtcca
gacgagcgtgtccgcatgaaccgcgtcacacgcaacaacctgagggtacgcctcggtgat
gtcatcagtgtccatgcgtgcccagatgtgaagtacggcgtgcgtatccatgtcctgccg
atagacgacaccatcgaagggttaacgggaaacctgttcgacgtcttcctgaaaccctac
ttcttggaagcctatcggcccgtacacaaaggcgacatcttccttgtgcgggggggcatg
cgggcagtggagttcaaggtggtggagacagaccccgccccccactgcatcgtcgccccg
gatacggtcatccactgtgagggacagccaatcaacagagaggacgaggaggagagtctg
aatgacgtaggctatgatgacattggaggttgtcggaaacagttagctcaaatcaaagag
atggtggagcttcccctcagacaccctggactattcaaggctataggagtcaagcctccg
aggggtattctgctgtatggacctccaggtacagggaagactctggttgcccgggccgtc
gccaatgagactggagcattcttcttcctcatcaatggacctgagatcatgagtaagatg
gctggggagtcagagagcaacctgaggaaagccttcgaggaggcagagaaaaactctccc
gccattatcttcatagatgaactggactctatcgctcctaagagagagaagacccatggg
gaggtggagaggcgtatcgtatcacagctcctcaccctgatggatggactgaagcagaga
actcacgttatcgtcatggcagccaccaacagacccaacagcatcgaccctgccctgaga
cgcttcggcaggtttgaccgagagatagacatcggcatcccagactccactggcaggatg
gagatacttcagattcacaccaagaacatgaaactatctgatgacgtggacctggagagg
gtttccatggatgcgcatggccatgtggggtcagacctggcagctctgtgttctgaggca
gctctacaggccatcaggaagaagatgaccctgattgacctggaggacgacaccatcgac
gctgaactgctcaactcactggcagttaccaacgatgacttcaagtgggcgttggggcag
agtaacccgtcagctctgagggagacggtagtggaggttcctaacgtcagctgggaggat
ataggaggcctgggcgaggtcaagagagaactgcaggaactagtacagtatccggtggag
tacccagataagttcctgaagttcggtatgaccccgtcacgaggcgtgttattctacgga
cccccaggctgtggaaagactctgctagccaaggcgattgctaacgagtgccaggccaac
ttcatctccatcaagggacctgagcttctcaccatgtggttcggcgagtcagaggctaac
gtcagggatgtcttcgacaaggccagacaggcggccccctgcatcctgttttttgacgag
ctggactccatcgccaagtccagagggggtggagccggggacgcagggggcgcggccgac
agggtcatcaaccagatcctcacggagatggacggaatgtccaacaagaagaacgtgttt
attataggagctaccaacagacctgatataatagactcagctatcctacgtccagggagg
ctggatcagctcatctacatccctctaccagacacagcctcccgtaccgccatcctcaac
gctaacctacgcaagtcccccatcgccagagatgtagacctggcctacctgtctggtatc
acccagggtttcagtggggcagacctgacagagatctgccagagggcctgtaagctggcc
atcagagaggccatagaggctgagatcaaagcagagcgccagagacagacccacccaggc
accgccatggatgaggacagtgaccctgttccagagatcaggaaggatcactttgaagaa
gccatgaggttcgctcggcgctccgtcagcgacaacgatatcaggaagtatgagatgttc
gcccagacactacagcagagcagaggctttgggaacttcaggttcccctctggctctcag
tccgggggtcaagggtcggggtcagggtcaggggggcagttcagagaagaggtagaggac
gacctctaccagtga
DBGET
integrated database retrieval system
