Coregonus clupeaformis (lake whitefish): 121554084
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Entry
121554084 CDS
T08357
Name
(RefSeq) VPS10 domain-containing receptor SorCS1-like isoform X1
KO
K27081
VPS10 domain-containing receptor SorCS1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121554084
Membrane trafficking [BR:
cclu04131
]
Protein recycling
Others
Others
121554084
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD
PKD_4
PSII_BNR
Motif
Other DBs
NCBI-GeneID:
121554084
NCBI-ProteinID:
XP_045069974
LinkDB
All DBs
Position
Unknown
AA seq
1288 aa
AA seq
DB search
MERGVRICPIWHTSVFWFLLLIIISFFLAVKSEITCRSCQRGDKGRIKELLLKTDTREFA
TGYGGEVIGNGAGATAPPSLNSASAETRQLDCASGSDECIQGKYIYSRRKRNTDMLLGSK
TALPGGGMHYGGGKQREFTRRGEYKVSNLKMNIHAGKTDLGKAREYLIPGISHKPRVRRN
SPRANIGDDKVKSSGSPQRSETLPLSYSREGITSPAGRSRVTRSELRWSTEDRRAASSRQ
DELKLTSSTFALTGDSAHNQAMVHWSGQNSSVILMLTKLFDFNLNSVTESSLWRSTDYGT
TYQKLNEKVGAKTILSYLYVSPNNKRKIMLLTDPEVESSLLISSDEGATYQKYRLSFYIL
SLLFHPEQEDWILAYSHDQKLYSSVEFGRRWQLVHERVAPNRFYWSKSGLDKEPGLVHLE
TIISEGQALYVTCKLQNCTEANKGKPFPGYIDPNSLVVQDEYVFVQVSTGGRPIYYVSAK
REVFTPMKLPKYTLPKDLHVISTDENRVVAAVQEWNQNDTYNLYVSETGGVFYTLALENV
VSSMGHEGNVMIDLYEVAGIKGMFLANKKMDNVVKTYITYNRGRDWRLLQAPIADLRGNS
IHCELPYCSLHLHLHVSANPYTSGNIESKDSAPGIIVASGSIGAELTTSNVSMFITSDAG
NTWRQIFDEEYSVLYLDQGGALVAIRHTPLPIRHLWMSFDEGRQWNKYSFTMSPLFVDGL
LGEPGEETLIMTIFGHVSHRSEWQLVKIDFRSIFNRRCTEGDYQTWHLHNRGEPCIMGVK
RIYRKLKPVARCVMGKTYSVTMTSAPCDCTEADFECDYGYERRSDGKCTPAFWFLPSSMS
RSCTTGTTFINSTGYRKVVSNNCTAGVIAEYMARRQHCPTQAPKGLHLVTSEGKLTATLG
TNVTFLVFLEEGDGARTSIMVDFGDGHALTYSNVSSIEDGIKHIYKAVGIFRVTATGENS
LGSESVVLYLHVTCQLEYIHLSTPFVAVKSKEVNLTAVLWPSQVGTVTYIWWFGNNSEPI
ITLEGSVACTFSREGVNTVTVQVSAGNAILQDRKTIAVHEYFRSHLLAFSSNLDDHNPDV
AEWRLDVSRVIKNSMVQATGMSPERLLVTVLPGLPTAAEFFILPDKELTEGKPEKNSAHL
DQLSEILLSALNQNLVQFTLRPGVQVTVYAAHLSAAPLVDTSENHSGSAMLMLLSVVVLG
LAIFVIYKFKRKIPGLNVYAQMQNEKEQEMIPSPVSLTESTLVSPNTPRELVTSPELMDT
ELNTRPIGCIKPHAHVKFSNELPTYINI
NT seq
3867 nt
NT seq
+upstream
nt +downstream
nt
atggagaggggggtcagaatttgcccaatctggcacactagcgttttttggtttctgctt
ttgataattatatctttctttctagccgttaaatcagagataacttgcagatcatgtcag
cggggagataaggggcgtattaaggaattactgcttaaaacggacacacgagaattcgca
acagggtacggaggggaagttattggaaatggagccggggcaactgctccaccgagttta
aattctgcaagtgccgaaactcgacagcttgattgcgcatctgggtccgatgaatgcatc
caggggaaatacatctactcaaggcgaaaacggaatactgacatgctcctcggttccaag
accgcactacctggtggaggaatgcactacggtggtggtaaacagagagaattcacccgg
cgcggtgagtacaaagtttccaacctgaaaatgaacattcatgcaggcaagacagatctc
gggaaggctcgcgaatatttaattcccggcatctcacacaagccccgagttcgtaggaac
agcccgagagctaatattggggatgataaagtgaagtcatccggatcaccccaaagaagt
gagacgctgcctctgagttactcgcgagagggcatcacctcaccggctgggcgcagcaga
gtgacacggtccgaattgcgatggagcaccgaggacaggagagcggccagttcgaggcag
gacgaactcaaactcaccagttcaaccttcgcattgaccggagattccgctcacaaccaa
gccatggtgcactggtctgggcaaaatagcagtgtgattctcatgctgaccaagctgttt
gacttcaacctgaacagtgtcacagagagctcgttgtggaggtcaaccgactacggaacc
acttaccagaagctcaatgagaaagtgggggcgaaaacaattctcagctacttgtacgtc
agtcccaacaacaagagaaagatcatgcttctgactgacccggaggtggaaagcagcctg
ctgatcagctccgatgagggagcaacctatcagaagtaccgcctcagcttctacatcctc
agcctgctcttccaccccgagcaggaggactggatccttgcctacagccacgaccagaag
ctgtacagctcggtggagttcggaaggaggtggcaacttgtccatgagagggtggccccc
aatcgattctactggtcgaaatcgggtttagacaaagaaccgggcttagttcacctggaa
accatcatctccgaaggacaggcgctgtacgtcacctgcaagctgcagaactgcaccgag
gccaataagggcaagccgttccccggctacattgaccccaattcccttgtggtgcaagac
gagtatgtgtttgtccaggtgtcaactggtgggcgtccaatctactacgtgtcagccaag
cgggaagtcttcacaccaatgaagctacccaagtacaccttgcctaaggacctgcatgtg
atcagtacggatgagaaccgggtggttgcggcggtgcaggagtggaaccagaacgacacc
tacaacctgtacgtgtcagagactggaggggtattctacaccctggccctggagaacgta
gtcagcagcatggggcacgagggcaacgtcatgatagacctgtatgaggtggcgggtata
aaagggatgttcctcgccaacaagaagatggacaacgtggtgaagacctatatcacctac
aacagagggagagactggaggctactgcaggctcccattgctgacctgaggggcaacagc
atccactgtgaactaccatactgttctctacacctccacctacatgtgtcggccaacccc
tacacgtcggggaatatcgagagtaaggactctgcaccggggatcattgtagcctcaggc
tcaatcggagcggagttgaccaccagcaacgtgagcatgttcatcacctcggacgccggc
aacacctggagacagatctttgatgaggagtacagtgttctctacctggaccaaggaggg
gctctggtggctataagacacactccactccccatccgacacctatggatgagtttcgac
gaggggagacagtggaataaatacagtttcaccatgtcgcccctgtttgtggacgggtta
ctaggggagccgggggaggagactctcattatgacgatctttggccacgtcagtcaccgg
tcggagtggcagctggtgaagattgacttcaggtccatcttcaaccggagatgtacagag
ggggattaccagacatggcacctacacaaccggggcgagccgtgcatcatgggagtgaaa
agaatctacaggaagttgaagcccgtagccaggtgcgttatgggtaagacgtactcggtg
acgatgacctcggcgccctgcgactgcacagaggccgactttgagtgtgactatggctac
gagaggcggagtgacggcaagtgcacccccgccttttggttcctcccatcgtccatgtct
agaagctgtaccacagggactactttcatcaacagcactggctacaggaaggttgtgtcc
aataactgcacagcgggagtgatagcagagtacatggccaggaggcagcactgtcctacc
caggcccccaaaggcctgcacctcgtcaccagtgaaggaaagctgacagctacgctgggc
accaatgtcaccttcctggtgtttcttgaagagggagacggagccaggacgagcatcatg
gtggacttcggggacggtcacgctctgacctactccaacgtgagctccatagaggatggg
atcaagcacatctacaaggctgtggggatcttccgtgtgaccgctacaggagagaacagc
ctggggtcggagagcgtggtgctctacctccatgtcacatgtcagctggagtatatccat
ctctccactccctttgtggctgtgaagagtaaggaagtcaacctcaccgctgtgctgtgg
cctagccaagtgggaacagtcacctacatctggtggttcggaaataacagtgagccgata
atcaccctggaagggagcgtggcgtgcacgttctcccgggaaggcgtcaacactgtcacc
gtgcaggtgtccgctgggaacgccatcctgcaggaccggaaaaccatcgctgtccacgaa
tatttcaggtcacatctactagccttctcatctaacctggatgaccacaaccccgacgtg
gccgaatggagactggacgtcagcagagtcatcaagaactccatggttcaggccacgggg
atgagcccggagcggctccttgtcaccgtcctacctgggttgcccacggcagcagagttt
ttcatcctgccagacaaagagttaacggagggcaagccagagaagaactcagctcattta
gaccagctctctgaaatcttgcttagcgccctcaaccaaaacttggtccagttcaccctt
cggcctggggtccaggtcacagtatatgctgcacatttgtcagcagcgcccctagtggac
acgagtgagaaccacagcggctcggccatgctgatgctgctgtcggttgtggttctgggt
ttggcgatatttgtcatctacaaattcaaaaggaagatcccaggcctcaacgtctatgca
cagatgcagaacgaaaaagaacaagaaatgataccaagtccagtaagtctgacggaaagc
accctggtgtccccgaacactccgagggagctggtgacttctccggagcttatggacacc
gagttgaacacacggcccatcggatgcatcaaacctcacgcacatgtcaaattctcaaat
gaactccccacatacatcaacatttaa
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