Coregonus clupeaformis (lake whitefish): 121554092
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Entry
121554092 CDS
T08357
Name
(RefSeq) VPS10 domain-containing receptor SorCS3-like isoform X1
KO
K27083
VPS10 domain-containing receptor SorCS3
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121554092
Membrane trafficking [BR:
cclu04131
]
Endocytosis
Others
Others
121554092
Endosome - Lysosome transport
121554092
Endosome - Golgi transport
121554092
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD
PKD_4
Motif
Other DBs
NCBI-GeneID:
121554092
NCBI-ProteinID:
XP_041723481
LinkDB
All DBs
Position
Unknown
AA seq
1262 aa
AA seq
DB search
MDTWLGFSPGLHLTLCTWLLISAHTQLNAKAEISCSSCQSPVQLHLDELQLDTGMHAATG
TRQAAKALERVRLEYQLLGVTDQNTGVPSETQQAGVPVDEPRFTDDGVSAKVALEDSTRF
SENEETYGGEYYIGMNDLGKVKDGAGDVALRRVKRSGPERPEFRESLRTGGPGLEGETSD
ERRSPGPLLDGHRLGRSEFKWNRDEGRGTSRGEDPKLSSTTFALTGDSAHNHAVVYWSGQ
NSSVILILTKLYDFHLGSVTESTLWRSTDYGSTYERMNDKVGSKTVLSYLYVCPSNKRKI
MVLTDPEFESSVLISSDEGASYQKYRLSFYILSLLFHPTQEDWALAYSHDQKLYASLDFG
RKWQLVHEHVNRFYWSVTGLDKESDLVHMEAHTPNGRIQYVTCRALTCSEPNRNYPFPGY
IDISSLVVQDYYMFIQVTTAGQASYYVSYQRDPFLKIKLPKYSLPKDLHIVSTDEHQVFA
AVQEWNQNDTYNLYLSDTRGILFTLAMENVKTTRGLGGNQMLDLYEVAGIKGMLIANRRL
DNQVKTYITYNKGRDWRLLQAPATDLAGNDIHCVLPFCSLHLQLQTSENPYLSGSISTKA
SAPGIIVATGNIGSELSYNNVGMFISSDAGNNWRQIFEEEHNVWFLDKGGALVAVKQPTV
PTRHLQISFDEGRQWTRHSFSLVPLFVDGMLVEAGTENQIMTFFGHFSHRSEWQLIKIDY
KSIFNRKCTEGDYQTWHLHNKGEPCVMGQKQIYMKRRPGNYCMLGKDYAKVLSAESCICR
AHDFECDYGYERRREGNCLPAFWFNPAVVSRSCSQGQNYLNSTGYRKVVSNNCIKGVKDM
YTPRKQMCPNRAPKGLSLSTREGKLTADLGTNVTFLVHLDESLLETLLAFQGDSMRTNIQ
LDFGDGTAVSYSNLSWIEEGIRHVYKTAGIFCVSALAENTLGFDTTTLYLHVTCNVEHVQ
LLAPFVAIKNKEVNLTAVVWPIHSRTLTYFWWLGNSTEPVISLDGSISYTFTSEGMNTVT
VQVSSANAILQDTKTIAVQEFFKSLLLSFSPNLDEFNPDVPEWRQDVGRVIKKALLQVSD
FPEDQLLVAVFPGVPTAAELFLLPHKNQSEGRKKKEEELEQISEILASALNQNLVEFELK
PGERVIVYITQLTLAPLVDSSPRHSSSAMLMLLSVVFLGLAVFLIYKFKRKIPWISIYAE
VNQEKEQEMIGSVSQSDSTPKITLSEFSTPTEVMEKEMDARVKRRIGNACESTREIPNCT
SV
NT seq
3789 nt
NT seq
+upstream
nt +downstream
nt
atggatacttggcttggcttcagcccaggcttgcacttaactctgtgtacctggcttctg
atctccgctcatacccagctaaatgcaaaggcggagatatcttgctcctcgtgccagtcg
ccggtccagctacacctggatgaattacagctggataccggtatgcacgcggctactggt
acgaggcaggcggccaaagcactggaacgggtccggctggagtaccagctacttggagtt
actgaccaaaatactggagtaccaagcgaaacccaacaggcaggtgttcccgtggatgag
ccgagattcactgacgatggagtttccgccaaagtcgctctggaagattcaacccggttt
agtgaaaacgaagaaacgtatggtggtgaatattatattgggatgaatgatttgggtaaa
gtcaaggatggtgctggggatgttgcgttacggagagtgaagcgaagcggtcccgaacgc
cccgagtttagggagagccttaggacaggtggacccggtttggaaggagagacgtcggat
gagagaaggagtcctggtccgttactggacggacacagactgggccgatccgaattcaag
tggaacagggacgagggtcgagggacttccagaggagaagatcccaaactaagcagcact
actttcgccttgaccggagactccgcgcataaccacgcagtggtttactggtcggggcaa
aacagcagcgtgatcctgattctgaccaaactctacgactttcacctggggagtgttaca
gagagcaccctgtggagatcaacagactatggatccacctatgagaggatgaatgacaaa
gtgggatctaagacggtgctgagttacctgtatgtctgtccatccaacaagagaaagata
atggtgctgacagaccctgagtttgagagtagtgtgctcatcagctcggatgaaggagcg
agctatcagaaataccgcctcagcttctacatcctaagccttctgttccacccaacacag
gaggattgggccctagcctacagccacgaccagaagttgtacgcctccctggactttggg
agaaaatggcagctggttcatgagcatgtgaacaggttctactggtctgtaacgggtcta
gacaaggagtcagatctggttcacatggaggcacacacccctaacggacgtatacagtat
gtaacatgccgggctctaacgtgctcagagcccaacagaaactaccccttccctggatac
atcgacatcagctcactggtggtccaagattactatatgtttattcaggttactacagca
ggacaggccagctactatgtgtcctaccagagggatccattcctcaaaatcaaactgccg
aaatattctctgcctaaggacctccacatcgtcagcacagacgagcaccaggtcttcgcg
gcggtgcaggagtggaaccagaacgacacctacaacctgtacctctcagacacccggggc
atcctcttcaccctggccatggagaacgttaagactacccgtggcctggggggcaaccag
atgctggacctgtacgaggtagcaggtatcaaaggcatgctgatcgctaacaggagactg
gacaaccaggtgaagacctacatcacctacaacaagggccgtgattggaggttactgcag
gccccggcgaccgacctggctggcaacgatatccactgcgtactgcccttctgttcactc
catctccaactgcagacgtctgaaaacccctacctgtcaggcagcatatcaaccaaggcc
tcagcaccgggaatcatagtggccacagggaatattgggtctgagctgtcgtacaataac
gttggaatgttcatctcatctgatgctggtaacaactggagacagatattcgaggaggaa
cacaacgtctggtttctggataaaggaggggccctagtcgctgtgaaacaaccaactgtc
cccaccagacatttacagatcagttttgatgaggggaggcagtggaccagacatagcttc
tccttggtgcctctgttcgtggacgggatgctggtggaggccgggacagagaaccagatc
atgacgttttttggacacttcagccataggtcagagtggcagcttatcaagatagactac
aagtccatcttcaacaggaaatgtacagaaggagactatcagacgtggcaccttcacaat
aagggcgagccgtgtgtgatgggccagaaacagatctatatgaaacgcagaccaggaaac
tattgcatgctgggaaaagactacgccaaagtcctctctgctgagtcgtgtatctgtcgg
gcccacgactttgaatgtgattatggctatgaacggcgtagagaagggaactgtctacca
gcgttctggttcaacccagctgttgtatcaaggagctgcagccaaggacagaactacctc
aacagcacagggtaccgaaaagtggtgtccaacaactgcatcaagggagtcaaggacatg
tacacacccaggaagcagatgtgtcccaacagggctccaaaaggcctttctctctccacc
agagagggcaagcttaccgccgacctgggcaccaacgtcaccttcctggtgcatctagat
gagtccttacttgagactttacttgctttccagggtgactcaatgagaaccaacatccaa
ctggatttcggagatggcacggcagtctcctactccaacctgagctggatcgaagagggg
atcagacacgtttacaagacggctgggattttctgtgtctcggccttggcagagaacacc
ctgggatttgataccacaaccttgtacctccatgttacatgtaatgtggaacatgtccag
ctgctagctccgtttgtggccatcaagaacaaggaagtaaacctaacagcagtggtctgg
ccaatccactccaggaccctcacctacttctggtggctggggaacagcactgagccggta
atcagcttagacgggagcatctcgtacaccttcaccagcgagggaatgaacactgttacg
gtccaagtgtcttcagcaaacgccatactgcaagacaccaagacgatagcagtccaagag
ttcttcaaatctctgcttttatctttctcccctaatctggacgagttcaaccctgacgtc
cccgagtggagacaggatgtggggagagtcattaagaaggctctgctccaagtgtcagac
tttccagaggatcagctattggttgcagtgtttccaggtgtgccaacggccgctgagctc
ttcctgttaccacacaagaaccaatcagagggcaggaaaaagaaagaggaggagctagag
cagatctctgagatacttgccagcgctctcaaccagaatctggtggagttcgagctaaag
ccaggagaaagagtaatcgtttacatcacacagctaactttggcacccttggtggattcc
agcccgagacacagcagttcagccatgctgatgctcctatcagtagtattcctgggttta
gcagtgtttctcatctacaaattcaaaagaaaaatcccctggattagcatatacgcagag
gtgaaccaggagaaagagcaggagatgatcggttcggtcagccagagcgacagcacgcct
aagatcaccctcagtgagttctccacgcccacagaagtcatggagaaggagatggacgcc
agggttaaacggcgaattggaaatgcctgcgagagcacaagggagattcctaactgtact
agcgtgtaa
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