Coregonus clupeaformis (lake whitefish): 121554164
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Entry
121554164 CDS
T08357
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121554164
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cclu03041
]
121554164
03009 Ribosome biogenesis [BR:
cclu03009
]
121554164
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121554164
Spliceosome [BR:
cclu03041
]
Complex A
U2 snRNP components
U2 related factors
121554164
Complex B
121554164
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
121554164
Ribosome biogenesis [BR:
cclu03009
]
Eukaryotic type
90S particles
Helicases
121554164
BRITE hierarchy
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
SRP54
Glyco_hydro_98M
AAA_25
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
121554164
NCBI-ProteinID:
XP_041723566
LinkDB
All DBs
Position
39:complement(15827682..15858896)
Genome browser
AA seq
734 aa
AA seq
DB search
MSKRRDRDRDRDERLKDRNRGRDVKPSGMALNPAVGSGIAGLLSHKQTAMQQQINPFTNL
PHTPRYYEILKKRLQLPVWEYKERFNDILGRHQCFVLVGETGSGKTTQIPQWCVDMVKGL
GGPKKAVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTFLKYMTDGML
LREAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRSDLKVIVMSATLDAGKFQ
VYFDSCPLLTIPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMCEEEEGDCLLFLTGQEE
IDEACKRIKREIDDLGPDAGDIKIIPLYSTLPPQQQQRIFESPPPHKPNGAIGRKVVVST
NIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTRPGKC
FRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALE
LLNYVAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCEFNCSNEILSITAMLSVPQCFV
RPTEARKAADESKMRFAHIDGDHLTLLNVYHAFKQNHESTQWCYDNFVNYRSLMSADNVR
QQLSRIMERFSLPRRSTEFTSRDYYINIRRALVTGFFMQVAHLERTGHYLTVKDNQVVQL
HPSTVLDRKPEWVMYNEFVLTTKNYIRTCTDIKPEWLVKIAPQYYEMGNFPNCEAKRQLE
RIVAKLSTKEYSQY
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaaggcgagaccgcgacagggaccgcgacgagcggttgaaggacaggaacaga
ggccgggacgtcaagccctctggcatggccctgaacccggctgttggcagcggcatcgca
ggcctcctctcccacaagcagacggccatgcagcagcagatcaacccgttcaccaacctg
ccccacacaccgcgctactatgagatcctgaagaagaggctccagctgcctgtgtgggag
tacaaggagcgcttcaacgacatcctgggacgccaccagtgcttcgtgcttgtcggagag
acgggctccggcaagaccacgcagatcccccagtggtgtgtggacatggtgaagggcttg
ggcggtcctaagaaggcggtggcctgtacacagcccaggagggtggcagccatgagcgtg
gctcagagggtggccgacgagatggacgtcatgctgggccaggaggtcggttactccatt
cgattcgaggactgcagctcggccaagaccttcctcaagtacatgacagatggtatgttg
ctgcgggaggccatgaacgaccccctactggagcgctacggcgtcatcatcctggacgag
gcccacgagagaacgttagccacagacatcctcatgggtgtcctcaaagaggtcgtccga
cagaggtccgacctcaaggtcatcgtcatgagcgccacgctggatgccggcaagttccag
gtgtactttgacagctgtccgctgctgaccatcccgggacgcacgcacccggtagagatc
ttctacacgccggaacccgagagggactatctggaggcagccatccgcaccgttatccag
atccacatgtgtgaagaggaggagggcgactgtctgctcttcctcactggacaagaggaa
atcgacgaggcctgcaagcgcatcaagagggaaattgatgacctgggacccgacgcgggg
gacatcaaaatcatcccgctgtactcgacgctgccgccccagcagcagcagaggatcttt
gagtcgccaccaccccacaagcccaacggagccatcgggaggaaggtcgtggtttcgaca
aacatcgccgagacatccctgaccatcgacggcgtggtgtttgtaattgatcccggattt
gccaagcaaaaggtgtataaccctcgtatcagagtggagtccctcctggtgacggctatc
agcaaagcatcggcccagcagagggcggggcgcgctgggaggacacgcccagggaagtgc
ttccgcctctacacagagaaggcctacaagaccgagatgcaggacaacacgtatccagag
attttgaggtccaacctgggttcggtcgtgctgcagctcaagaagctaggtatcgacgac
ttggtacatttcgacttcatggacccaccagcaccggaaaccctgatgcgggccctggag
ctgctcaactacgtggcggcgctcaacgacgacggcgacttgacggagctgggctccatg
atggctgagttccccttagacccgcagctagccaagatggtgatcgcctcctgcgagttc
aactgctccaatgagatcctgtccatcacagccatgctgtcagtcccacagtgtttcgta
cgacccacggaggctaggaaggcggccgacgagtccaagatgcgtttcgcccacattgat
ggagaccacctgacgctcctcaacgtctaccacgccttcaaacagaaccatgagtcgaca
cagtggtgctacgacaactttgtgaactaccggtcgctgatgtcggccgacaacgtgcgc
cagcagctgtcccggatcatggagcgcttcagtctgccccgccgcagcacagagttcacc
agcagagactactacatcaacattcgcagagcgctggtcacaggattcttcatgcaggta
gcccatttggagcgtacgggccactacctgactgtgaaggacaaccaggtggtccagctg
cacccctccactgtgctggaccgcaagccggagtgggtgatgtacaatgagtttgtgctg
accaccaagaactacatccgcacctgcaccgacatcaaaccagagtggctggtgaaaatt
gccccgcagtactatgagatgggtaacttccccaactgtgaagccaagagacagttggag
cgcatcgttgctaaactctcaaccaaggaatactctcagtactaa
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