Coregonus clupeaformis (lake whitefish): 121554167
Help
Entry
121554167 CDS
T08357
Symbol
frem1a
Name
(RefSeq) FRAS1-related extracellular matrix protein 1a isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121554167 (frem1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
cclu04091
]
121554167 (frem1a)
Lectins [BR:
cclu04091
]
C-Type lectins
Lecticans
121554167 (frem1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Lectin_C
Calx-beta
Big_9
Motif
Other DBs
NCBI-GeneID:
121554167
NCBI-ProteinID:
XP_041723568
LinkDB
All DBs
Position
39:complement(16063896..16092445)
Genome browser
AA seq
2202 aa
AA seq
DB search
MGLQRGALRWALPCLLLLVAAGGSHGSLVKTNLGLRVKRGQSAYLQEGDLQFHIPRVKDA
CKVEVVLNEPITQRVGTLSPQVFDCHYLADDVKYVHNGCPILKEDTVKLRLYRFTETETF
TEVFVLRVEIMEPDCNIIKLGPKSLVVPEFYGLSDTLDGNVVSFHYERMTSLECSIRVNT
HETHLPGHGQLVTGEPDQLEARGDEPESFIPLRQQLDNKARAMCKTEDCLKGLKLAKVTK
VPCDEFLVMGLRYQHIDPPSPDVDFIVLRLDLTDTRSGSIYQSERAWIPVHIAGAVPNQP
PKPAFMSMFILEVDQFILTPLSTATLDAEDGETIKQLLVFNITKPPLEGFITHLSDHTRP
ISSFSWVDLNDMLIGYQPPNSSHTQRRNYEVEFEVHDFFFEKSPPIMVHMSVRTADTNAP
RVSWNMGLSLLEGQSRPITWDQLQIVDNDNFKAVRIITVDGLQHGRLTLRGGKGFMFTIA
DILAGAVRYHHDDSDTTKDFIIFRITDGRHQTRHKFPINILPKDDSPPFLITNTVLELSE
GHTALLRGSILQASDMDSSDDYILFNITRPPQAGELMKIPGPGFSGYPVSRFLQKDLFHS
VVYYRHLGNEVFDDSFEVVLSDFHDPPNLSEPQIIVVHINPVPDQPPKEVPGVTRCLVVK
ETEVVHLTKKQLHFIDLESPDSELTYTVTTPPFYSRSYGGHDAGRLFLVDSIPKFTKDPE
APVLRLFTQHAVNYMKVAYMPPILDIGPYPEHIQLVLSVTNQQGTTVAGICFNITVVPVD
NLAPEVHIKPLTVDEGGECWVGPDHLLLTDHDSTEESLRVELKREPQHGAVQLGGFPMKP
GQAFTVRDLKSLKVRYHHDSSETVGDAIELIATDGINAINFVLEVKVTLINDEVPVLMPG
LKPVLDCAEGQEVIITAEYIYATDADSDDNSLTYMIARQPYNGVVRKNAIVVDHFIQADI
AAGIITYKHTGAEIGLAPRHDTITFVISDGQAENVPSCCNDRGDTFKRGRTQVQESLPLY
DLMVTVLPVDSQMPSIATGDVFVVDEGGVAPITVAHLRASDVDTPLEELVISLVSPPQYG
YIENTLPSPGFEKSNTGISIASFSYSDIMNGHVNYVQSRHQRIEPTADQFMLCVSDGKHT
SAHVHFYTIISPINDEVPEFLARNITVREGHMKELDPTVINAVDLDVPKNNLLFSVVQAP
QHGTIMGRTYGNDVPTNGRPVNRRRDVEVLVQDFTMQELRNGMSLMYMHDDSENMVDSFT
IQLTDGKHKLHRHVMVNVLPVNDEEPRVIRNNGLEVEAGEARLISSAILFAQDSDTTSQE
IVYMLESIPTQGLLQVKVGSDWVTQSAGMNCTQETVDMNLLRYLHTGPLGHTQDFFMFHL
LDGKNRSPTQHFHISLKDMEKGNIAVFVKPVKTSRGERVVLTTDILLATDGTDKPEELFY
IVTVPPSNGHMEYIKHPGVAISTFSQMDIAANLVGYVHDNRATAPLETLQFVISNSKATR
NGTLEIFVETTDRVLPSLACNSGLRVPQDSSMAVTPDTLALSDPDTPPSDLLFFLAQPPQ
YGTLLRGGVPLAAGGNFTQWDLQELDVTYRHGGGPSQIDRFAFTASDTTNRGFLLEGMVQ
TEPVIFTIQIEPLDSSAPEVVQLQSLWKAEVLSDGRYGIYLSSRELRAQDANTKDEDLTF
HIHRPPYFGYLENTIKGSFVQQRFTQRDLSKRTIVYIIDPVTEAMSDSLEFRVSDPLGNT
GPSHTLELKWSRVELAVSEYQACEDQGTVSLDVLRKGNMAESSYITIKVREVTATAGKDF
TLSPSSLIQFDPGVSKRSWRIEITQDHLEEAEETFEVTLVSPEGTVVGSTSKALVKIKDS
GKGQCGSSRAPMGSSLGGKQVQSGPYPQHGSIQLETLPLAKGDQQMTWTRGDGMPQSVPA
AVPATSNMKLRAMGNRKTIPPSSVHRNGTDTVFTYHGIMSVRLEDDKSPSRKGRKANIQV
TSRGQQQHAAATPTVAPNLNPKPVPKRKGDRLLPPTKTEQPNKKEASPSSGPKPCVPELM
GLLHFNQSSGGLLRCNGVSWKPWAPTDEMVSAQNCRKGWTYHSGYCYFLSTERKSTWSTA
IRECRESHQANLVSVFSKADMDWLWDFSGRKPFWIGLNDRERRGRWEWVGGEPTTYTNWR
KSPARGKRKGTRRCVLVWRRAKWQIRDCKTGKGHRYICYIKT
NT seq
6609 nt
NT seq
+upstream
nt +downstream
nt
atgggtttacagagaggggcactgcgatgggcactgccctgcctgcttctgctagtggcg
gctggagggtcacacggctccctggtgaagactaacctggggttgagggtgaagaggggc
cagtcggcctacctgcaggagggagacctgcagttccacatccctcgggtgaaggacgcc
tgcaaggtggaggtggtgctcaacgagccaatcacgcagagggtggggacgctgtcgcct
caggtatttgactgccactacctggctgatgacgtaaagtatgttcacaatggctgcccg
atattaaaggaagatactgtcaagcttcgactctacaggttcacagagacagagaccttt
acggaggtcttcgtcctgcgtgtggagatcatggaacccgactgcaacatcatcaaacta
ggacccaagtccctggtggtgccagagttctacggcctgtccgacacgctggatggcaac
gtggtgtccttccactatgagaggatgaccagtcttgagtgtagcatccgtgtgaacacc
catgagacacacctcccgggtcatggtcagttggtcactggggagccggaccagctggag
gccagaggggacgagccggagagcttcattcctctccgccagcagctagataacaaggcc
agggccatgtgtaagactgaggactgcctgaagggcctgaagctggcaaaggttaccaaa
gtgccctgtgatgagttcctggtgatgggcctgaggtatcagcacatagacccaccgtct
ccagacgtagacttcatcgtcctccgactggatctcaccgacaccaggagcgggagcata
taccagtcggagcgggcctggatacccgtccacatcgccggcgccgttcccaaccagccg
cccaagccggccttcatgtccatgtttatcctggaagtggaccagttcatcctcacgccc
ctctccaccgccaccctggacgcagaggacggagagaccatcaaacagctgctggtgttc
aacatcaccaagccccccctagagggcttcatcacccacctgtcagaccacacgcgaccc
atctcttccttcagctgggtggacctcaacgatatgcttatcggctaccagccgcccaac
tcctcccacacccagcgtaggaactatgaggtggagtttgaggtacatgactttttcttt
gagaagagccccccgatcatggtccacatgtcagttagaacagcagacaccaatgcaccc
agggtgtcatggaacatgggtcttagtcttcttgaaggtcagtctcgtccaatcacgtgg
gatcagctccagattgtggacaacgacaacttcaaggctgtacgcatcatcactgtcgac
ggcctccagcatggcaggctaacactgagaggtggcaagggcttcatgttcaccattgcc
gacatccttgctggtgccgtgcgctaccaccacgacgacagtgacaccaccaaggacttc
atcatcttccgcatcaccgatgggcgccaccagacccggcacaagttccccattaacatc
ctgcccaaggacgacagcccaccgttcctcatcaccaacacagtgctggagctgtctgag
ggccacacggccctgctgagaggatccatactgcaggcctcagacatggactcaagtgac
gactacatcctgttcaacatcacccggccgccgcaggctggagagctcatgaagatccct
ggtcctggattcagcggttatcctgtcagtcgtttcctgcagaaggacctgttccactct
gtggtctactaccgccatctagggaatgaggtgtttgatgactccttcgaagtggtgctc
tcagacttccatgacccacccaacctttcagaacctcagatcatagtggtgcacatcaac
cctgtgcctgaccagccacctaaagaggtccctggggtgactcggtgcctggtggtcaaa
gagacagaggtggtccacctgaccaagaagcagcttcacttcatcgatctggagtcacct
gacagtgagctcacatacacagttaccactccgcccttctacagcaggtcttatgggggc
catgatgcagggaggctattcctggttgacagcattcccaaattcaccaaggatcctgaa
gcaccagtgttaaggttattcacacagcatgcagtcaactacatgaaagtggcctacatg
cctcccatcctggacattgggccttacccagagcacatccagttggtgctctccgtcacc
aaccagcagggaaccacagttgctggcatctgcttcaacattactgttgtgccagtggac
aacctggccccagaggtgcacattaaacctctgacagtggacgagggtggggagtgctgg
gtgggaccggaccacctgctgctgacagaccatgattctacagaggagagcctgagagtg
gagctgaagagagagcctcagcatggagctgttcagctgggtggcttccccatgaaaccg
ggccaggccttcactgttcgcgacctgaaaagcttaaaagttagatatcatcacgacagc
tcggaaacggtgggagatgccattgaattaattgctaccgatgggattaatgcaatcaac
tttgttctggaagttaaggtgacactgatcaatgatgaggttccagttctaatgccaggt
ctgaaacctgttctggactgtgcagagggacaggaagtcatcatcaccgctgagtacatc
tacgccacagacgcagacagtgacgacaacagtctgacctacatgattgcccgccagcca
tacaatggcgtagtgcgcaaaaatgccattgtggtcgatcacttcattcaggcagacatt
gccgcagggattatcacctacaaacacacaggagcggagattggactagcccctcgacac
gacacaatcacgtttgtgatatccgacggacaggcggagaacgttccgtcatgctgtaat
gaccgaggggacacattcaaaagaggcagaacacaagtccaggagagcctgcctctgtat
gacctgatggtcaccgtgttacctgtggacagtcagatgccttctattgcaacaggagat
gtgtttgtggtggatgaggggggtgtggcccctataactgtagcccacctcagggcctcg
gatgtggacactcctctggaggagctggtgatcagcctggtctctcctccccagtatggc
tacattgagaatactctgcccagtcctggatttgagaaaagcaacacaggcatcagcatt
gcttccttctcctacagtgacatcatgaatggacatgtgaactacgtccagtccagacac
cagaggatcgagccaaccgctgaccagttcatgctctgtgtctctgacgggaaacacacc
tctgcccacgtccacttctacaccatcatcagccccatcaatgacgaggtcccggagttt
ctcgccagaaatatcacggtgcgagagggacatatgaaggagctggaccctactgttata
aacgcggtggatctggatgtccctaagaacaacctgctgttcagcgtggtccaggccccg
cagcatggcaccatcatgggccgaacgtatggcaacgacgtgcccaccaatggaagaccc
gtcaacaggcgcagggacgtagaggtgctggtccaggacttcaccatgcaggagctgagg
aatggtatgtctctgatgtacatgcacgatgactctgagaacatggtggacagcttcacc
atccagctgaccgatgggaaacacaagctccacagacacgtgatggtcaacgtactccct
gtcaatgatgaggagcctcgagtcataaggaacaatggactggaggtggaggcaggcgag
gctaggctgatctccagtgctattctctttgctcaggacagcgacactacctcccaggag
atagtctacatgttggagagcattcccactcagggactgctacaggttaaggtggggtct
gactgggtgacccagtctgcggggatgaactgcacccaggagacagtggacatgaacctg
ctgcgctacctccatacggggccactgggacacacacaggatttctttatgttccacctg
ctggacgggaagaaccgatcccccacacagcacttccacatctccctcaaggacatggag
aaaggaaacattgccgtttttgtgaagccggtgaagaccagccgtggtgagcgcgtggtt
ctgaccacagacatcctgctggcgacggatggtacagacaaacccgaggagctgttctac
atcgttacggtcccccccagcaacggccacatggagtacatcaaacaccctggggtggcc
atcagcaccttcagccagatggacatcgctgccaacctggtgggctacgtccacgacaac
agagccaccgcgccgctggaaacactacagttcgtcatcagcaacagcaaggccacccgt
aacggcaccctggagattttcgtggagaccaccgaccgcgtgctaccctcactggcctgt
aacagcggcttgagagtccctcaggactcctccatggcggtgacccctgacaccctcgcc
ctgtccgaccccgacaccccacccagtgacctgctcttcttcctggcccagcctccgcag
tacggcaccctgctccggggaggtgtcccgctcgctgccgggggtaacttcacccagtgg
gacctgcaggagctggatgtgacctacaggcacggaggcggcccgtcgcagatcgaccgc
tttgccttcacagcctcagacactaccaacaggggcttcctgctggaggggatggtacag
acggaacctgtgatcttcaccattcagattgagccgttggacagctcggctcctgaggtt
gtgcagctgcagtctctgtggaaggctgaagtcctgtctgacggtcgctatgggatctac
ctctcgtcccgggagctgagagcgcaggacgccaacaccaaggacgaagacctcaccttc
cacatccacagaccaccatactttggctacctggagaatactatcaaaggcagctttgtc
cagcagcgtttcactcagagggacctgagcaaaaggactatcgtgtatatcatagaccca
gtgacagaagccatgtcggacagcctggagttcagagtgtccgaccctctggggaacact
gggccctcccacacactggagctgaagtggtctcgtgtggagctggctgtgtctgagtac
caggcatgtgaggatcagggcactgtctcactggacgtcctacggaaaggcaacatggcc
gagtcctcatacatcaccatcaaggtgagagaggtcacagcgactgctggaaaggatttc
actctgagcccgtccagcctaatccagtttgatcctggcgtatccaaaaggagctggcgt
attgagattacccaagatcacctggaggaggcagaggagacatttgaagtgacgctggtg
tcccccgagggaaccgtagtaggcagcacctccaaagctctggttaaaatcaaggactct
gggaaaggacagtgtggatccagtcgggcccctatgggctccagtctgggggggaagcag
gttcagtcagggccctacccccaacatggctccattcagctggagacactaccccttgcc
aagggagaccagcagatgacctggacccggggtgatggtatgccccagtctgtgcccgct
gctgtgcctgccacgtccaatatgaaactcagagccatgggcaataggaagacaattcca
ccatcgtcagtccatcgtaatggaacagacactgtgtttacgtaccacgggatcatgtca
gtgcgcctggaggatgacaagtctccctctaggaagggaaggaaggctaatattcaggtg
accagcagagggcagcagcaacatgcagcagcaacaccaacagtggctcccaacctcaac
ccaaaacctgtccctaagaggaagggtgacaggttgctcccacctacaaagactgagcag
cccaataagaaggaggcttcacctagctctggccctaaaccctgtgtcccagagctgatg
gggctcctgcactttaaccagagctcaggcgggctcctgcgctgcaacggggtctcctgg
aagccctgggctcccactgatgagatggtcagtgctcagaattgtcgtaagggctggacc
tatcacagtggctactgctacttcctgagcaccgagcgcaagtcgacgtggagcaccgcc
atcagggaatgcagggagagtcaccaagccaatctggtgagcgttttctccaaggctgat
atggactggctgtgggacttcagtggaaggaaaccattctggataggtctgaacgacagg
gagagacgaggacgctgggagtgggtgggtggagaacccaccacctacaccaactggagg
aagagcccggccagaggcaaaaggaaggggaccaggaggtgtgttctggtgtggaggagg
gccaagtggcagatcagagactgtaagacgggcaagggacatcgctacatatgttacatc
aagacgtga
DBGET
integrated database retrieval system
