Coregonus clupeaformis (lake whitefish): 121554258
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Entry
121554258 CDS
T08357
Name
(RefSeq) phospholipid-transporting ATPase ABCA1-like
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu02010
ABC transporters
cclu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
121554258
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
121554258
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cclu02000
]
121554258
Transporters [BR:
cclu02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
121554258
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_15
DUF4162
AAA_23
MukB
Motif
Other DBs
NCBI-GeneID:
121554258
NCBI-ProteinID:
XP_045067846
LinkDB
All DBs
Position
39:complement(12567042..12790549)
Genome browser
AA seq
2257 aa
AA seq
DB search
MGLLTQLGLLLWKNFTLRKRQKVRLVVELLWPLFLFFILVWVRSTTQPIYQGECHYPNKA
MPSAGVLPWLQGMMCNIDNPCENHSTPGEAPGQVNNFNNSIIAGMLIELQSLLANRSILT
KVQMLSDDVDQWALILQTSNHAKGQPIPLRSILNDNEMFTTYLRENLSVPMTVADSLITS
NVRLNGIMGISRQDDLMITLCNGTTLDRYVEFTSASDKEAFQNVSCSLTAQQLRQTREVF
LQNLDTRKMLTNLPSALDLTPSETFGLVRKTTEDALPVIDEINKLQNSMWLKAADMLDFR
ADAFGSLNILLCGKAPTSNSTKTTMHFPAFGAMRNDAENNETLDNVRSSNSSAFCKVLID
TLEGTPGLRNVWSTFRPLIQGKVLYTPDTPATRLMVKEANSTFNALAMLKELAEAWEDFG
PLVWDYFQNGPQVSALRAFLDNPVFAAALNQQLKGTRWTAELLANFLYNRPPEDHPAGMP
SNDWRNVFNATSQILDLLKKLIACLDLNKFEAADSEGHLEARALELLENDTYWAGIVFED
LDPDASHPPPYVKYKIRMDIDEGERTNKIKERGWSPGARDNSFNDLRYIWGGFAYLQDMM
DHSIIRVHTNKSQPLGVFAQQMPYPCYVDDVFLASIGTMLPMYLVLAFMYTVCMTIKGLV
LEKELRLKEVQRAVGVQNGAIWFAWFTENFVLLMVPCAFISVMVKYGKVLQYSDPSVIFV
FLLVFCVATIMECFFISVFFSKANLAAACGGLIYFVLYLPHLLCYAWRDVMGFQVKIAVS
LLSCVAFGYGCENFAKYEEQGIGIQWSNIAQSPEDGDRYSFIVSIIMMLVDALIYWLLTW
YIENVFPGQYGIAKPWYFPFTASYWCGTSPAPNADPSHFKDPIEYTDYLEKPPLNMKAGV
SIRNLVKIYKTGKKLAVDGLTVDFYENHITSFLGHNGAGKTTTMSILTGLFAPTSGTALI
NGYDIRTDMDTIRKHLGMCPQHNVLFNDLTVEEHIYFYSRLKGRSRDEVKTEMDQMIKDV
GLPHKRKELAKNLSGGMQRKLSVAIAFVGGSNIVILDEPTAGVDPYARRGIWELLLKYKQ
GRTIILSTHHMDEADILGDRIAIISHGKMCCYGSSLFLKKYFGSGYYLTLVKAGDKQMTN
QCTGAEQGQVKEETGESLRRTSLDEGIASQNWSNSEPTELTDVSKLVRRHVPEAVFLESI
GQEITYILPYGGAKDGTFALLFKELDLKMADIGVTNYGISDTTLEEIFLKVAEDTGVDVE
IPALVRGKTRSSRESKRQRQSLTNVGKTSDEMPGKSDEVKVKFTSRVEDVERVANMNGKG
SSVITGWELIRRQFLALFIKRFHHARRSRKGLIAQVILPAVFVCLSLIFSVIVPPFAEYP
NLELQPWMYGLPQTTFYSNDGPPNNTEVAQVADSLVNNPGFGTRCMANNPIPNLPCVPND
SKWFTPTVDPSISDIFINGNWSMANPSPNCQCSTPQKTTMLPDCPPGAGGLPPPQRTQNT
TDTLQNMTGRNMTDFLLKTYKEAGRKRYGGISVGGVNSQVRMTEPEIEAVIRDLKSLLNS
SQDKTTNQMLLNAETLLKELGTRDNVKVWFYNQAWHGIVSFLNVANNAILRGNLPTGHDP
REYGISTSSHPLNLTKTQLSFQALAATSTDVVVSICVIFAMSFIPASFVLFLIQERVSKA
KHLQFVSGVNPTVYWVANFAWDICNYIVPCLIVIVIFLCFQQKAYVSLPNLPALILLLVM
YGWSITPMMYPASFIFSVPSTAYVVLTCINLFIGINGSVATFVMELFADDNISKINDIVK
QVLLIFPHFCLGRGLIDMGKNQAMATLYESFGEDRFQDPLSWDMVGKNLCAMAIQGAVMF
TITLLIQYKFCYKPRLISGESFSKEDEDVDVARERARIHQGGAEKDLLRICNLSKVYSGK
KIPAVDRVCVGVPAAECFGLLGINGAGKTTTFKMLTGDISISGGEAFLNGYSIRTEMRDV
HQNMGYCPQFDAINDLLTGREHLEFYARLRGVPEKEVTMVAEWGIQKLGLVKYSDKSAGT
YSGGNKRKLSTAMALIGCPPVVFLDEPTTGMDPKARRFLWDCILSVIKEGRSVILTSHSM
EECEALCTRMAIMVNGQFKCLGSIQHLKSRFGDGYTVIVRVGGSPPALGPVEEFVHETFP
GSILKEKHHNTLQYQLPHSEGALASIFSHFTTHQQRLGVEDYSVSQTTLDQVFVNFARYQ
HEEDNQALQAYDNNVDVSDEMPMETRNSTGSTVPESV
NT seq
6774 nt
NT seq
+upstream
nt +downstream
nt
atgggtctcctgacacaactcggtctgctcctgtggaagaacttcactcttcggaagaga
caaaaggtgcgtcttgtggtggagttgttgtggcctctctttctgttcttcatcctggtc
tgggtgagatcaaccacccaacccatttaccagggcgaatgtcattatccaaataaagcc
atgccttctgccggggtgctgccttggcttcaaggcatgatgtgtaacatagacaaccca
tgtgaaaaccattccacgccaggagaagcaccgggacaagtcaacaacttcaacaattcc
ataattgctgggatgttgatcgagttacagtcacttctggcaaacagatccatcctaacc
aaggtccagatgctttcagatgatgtggaccagtgggctttgattctacagacatctaac
catgcaaaaggtcagcccattcctctgagaagtatcctgaatgacaatgaaatgttcacc
acatatctgagggagaacttgtccgtgccaatgacggtagccgacagtctgattacctca
aatgttcgcctgaatgggataatgggcatttcaaggcaagacgacctgatgatcactctt
tgcaatggaacaactcttgatagatacgtggaattcaccagcgcctctgacaaggaggcc
tttcagaatgtcagctgctccctcacagcacaacagttgagacaaaccagggaagtcttc
ctacaaaacctggatacaaggaagatgctcaccaatctaccttcggctttggatttgact
ccgtccgagacatttggattagtaagaaaaactacagaggatgccttacccgtgattgat
gagataaacaagttgcagaactcaatgtggttaaaggccgctgatatgctggatttcaga
gcagacgcgtttggtagtctgaacatcctactttgtggtaaagcaccaacctccaactcc
acaaagaccaccatgcatttccctgcttttggagcgatgaggaatgacgcagaaaataat
gagacactggacaacgtcaggagcagcaattccagtgccttctgcaaagtactgattgac
actcttgagggaactcctggcctacgtaatgtttggagtacgtttcggcccctaatccaa
gggaaggtcctttacacccctgatacacctgcaactagactaatggtgaaagaggcaaat
agcacattcaacgcgttggccatgttgaaagagctggcggaagcatgggaggattttgga
ccacttgtttgggactactttcaaaatggcccccaagtcagtgcactcagggccttcctg
gataacccggtgtttgcagccgcactcaaccagcagctcaaaggcacaagatggacggca
gaactgctcgccaacttcctgtacaataggccccctgaggatcaccccgcgggcatgccg
tcgaatgactggcgcaacgtgttcaacgccaccagccaaatcctggacctcctgaagaag
ttaattgcgtgcctcgacctgaataagtttgaggctgccgacagtgagggacatctcgag
gctagggccttggagcttctagaaaacgatacgtactgggccggtatagttttcgaagac
ctcgaccctgacgccagccacccccctccttacgtcaagtacaagatccgcatggacatc
gatgagggggagcgtaccaataagattaaagaaaggggatggtctcccggggcccgtgac
aactcctttaacgacctgcgctatatatggggaggcttcgcctatctgcaggacatgatg
gaccacagcattatacgggtgcacacaaacaaatcacagccgctcggcgtgtttgcccag
caaatgccgtatccttgctacgtggacgacgtcttcctcgcgagtatcggaaccatgctt
cccatgtacctggtgctggcgttcatgtataccgtctgcatgaccatcaagggcctcgtc
ctggagaaggagctcaggctcaaggaggttcagcgggccgtcggtgttcagaacggtgcc
atttggtttgcgtggttcaccgagaactttgtgctgctcatggtcccatgcgcattcata
agtgtcatggttaagtatgggaaggtgctgcagtacagcgacccttcggtgatcttcgtc
ttcctgctggtcttctgtgtggccaccatcatggagtgtttcttcatcagcgtcttcttc
tccaaggccaacctggcggcggcgtgcggaggcctcatctacttcgtcctctacctgcca
caccttctctgctacgcctggagggacgtcatggggttccaggtcaaaattgctgtgagt
ttgctgtcgtgcgtggccttcgggtacggctgtgagaacttcgccaagtacgaggagcag
ggcatcggtattcagtggagtaacatcgcccaaagtcctgaagacggagaccggtatagt
ttcatcgtgtccatcatcatgatgctagtcgacgccctcatttactggctactcacgtgg
tacatcgagaacgtcttcccaggccaatatggaatagccaagccgtggtacttccctttc
accgcctcctattggtgtgggacgtcaccggcgcccaacgctgaccccagtcatttcaag
gaccccattgaatacaccgattatttggaaaagccaccactcaatatgaaagcaggggtc
tcaatcaggaaccttgtgaagatctataaaactggaaaaaagcttgccgtggatggacta
actgtggacttctacgagaatcacatcacctctttccttggtcacaatggggcaggaaaa
actaccaccatgtcgatcctgacaggactcttcgctccgacgtcggggactgctctaata
aacggttatgatatccgcacggacatggacaccattaggaagcatctgggaatgtgccct
cagcacaatgtcttattcaatgaccttacagtggaggagcacatctacttctactccaga
ttaaagggacgaagccgagatgaagtgaaaacagagatggaccaaatgatcaaggatgtc
gggctgccacacaaacgcaaggaacttgccaagaacctgtcagggggaatgcagaggaaa
ttgtcggtagcaatcgcatttgtgggagggtccaacatcgtcatcctggatgaacccaca
gcgggggtggacccatacgcccggagggggatatgggaactactgttgaagtacaaacaa
ggtcgcacaatcatcctctccactcatcacatggacgaggcggacatcttgggagaccgc
attgccattatctctcacggcaagatgtgttgctacggctcctccctgttcctgaagaaa
tactttggcagtggctactacctcactctggtcaaggccggagacaagcaaatgaccaac
cagtgcactggagccgagcagggccaggtgaaagaggagactggtgagtcattgaggaga
accagtctggatgaagggatcgcaagccagaactggagtaactctgaacccacagagctc
acagatgtcagtaagctggtgcgtcggcatgttcccgaggcggtgttcctggagagcatc
ggccaggagatcacctacatccttccctatggtggggccaaggatggcaccttcgcgctc
ctcttcaaagagctggacctgaagatggccgacattggtgtcaccaactacggcatctca
gataccacactagaggagattttccttaaagtggcggaggacacaggtgttgatgtggaa
ataccagctttggtaagaggcaagacaagaagttcaagggaatccaagaggcaacggcaa
agcctcaccaatgtcgggaaaacttcagacgaaatgcctgggaaaagtgacgaggtgaaa
gtgaagttcactagcagagtggaggatgtggagagagtggccaatatgaatgggaagggc
tccagtgtgatcacgggatgggaactgatccggaggcagttcctggccctcttcatcaaa
cgcttccaccacgcacgcaggagccgcaaaggcctcattgctcaggtgattctgcctgct
gtcttcgtctgcctgtctctcatcttctccgtcatcgtccccccttttgctgagtacccc
aatctggagctgcagccttggatgtatggactgccccaaacaacattctacagcaatgat
ggaccgccaaataatacagaggttgctcaggtggcggactctttggtgaataatcctggg
tttgggactcgctgtatggccaacaacccgataccaaatctcccatgtgtcccgaatgat
tctaagtggttcactcccacagtggatccttctatcagcgacatcttcatcaacggaaac
tggagcatggccaacccttcccctaactgccagtgcagcactcctcagaagaccaccatg
ttgccagattgcccacctggagccggtgggctgcctccccctcagaggacccagaatacg
acggacacactgcagaacatgacggggcggaacatgacagacttccttttaaagacctac
aaggaagcaggcagaaaaaggtacggagggatttctgtcggaggagtcaactcccaagtc
aggatgactgaaccggaaatagaagctgtgatcagggatttgaaaagcctattaaattcc
tcccaggataagacgaccaatcagatgctcctgaatgccgagacgctcctgaaagagctc
gggaccagggataacgtcaaggtgtggttctacaaccaggcgtggcacggtattgtatcg
ttcctcaacgtggccaacaatgccatcctgagaggcaacctgccgacgggtcatgacccc
agggagtatggaatctccacctccagccaccccctcaacctcaccaagacgcagctttcc
ttccaggcactggccgccacctccaccgatgtggtggtgtccatctgtgtcatctttgcc
atgtccttcatcccagcaagcttcgtcctcttcctcatccaggagcgtgtcagcaaggcc
aagcacttgcagtttgtcagtggcgtcaacccgaccgtctactgggtcgccaacttcgcc
tgggatatttgtaactacatagtcccgtgtctaatagtcatcgtcatcttcctgtgcttc
caacaaaaagcctacgtgtcccttcctaacctaccagctttgattctgctactggtaatg
tatgggtggtctatcacacccatgatgtacccagcctcgtttatcttcagcgtccccagc
acggcctacgtggtgctgacctgcatcaacctcttcatcggcatcaatgggagcgtggcc
accttcgtcatggagctgttcgctgatgataacatttcgaaaatcaatgacattgtgaag
caggtgctgctgatttttccgcacttctgtctgggtcgagggctcatcgacatgggcaag
aaccaggctatggccaccttgtacgaaagctttggggaagaccgtttccaggaccccctc
agctgggacatggtggggaagaacctctgtgccatggccatccagggggcagtcatgttc
accatcactctccttatccagtataaattctgctacaagcccagactgatttctggagag
tcattctccaaggaggacgaagatgtggatgtggcacgggaacgtgcacgcatccatcaa
ggcggcgcagagaaagacctgttgagaatctgcaatctctctaaggtgtactcagggaag
aagattcctgctgtggacagggtgtgtgtgggcgttccagccgcagagtgctttggactt
ctggggattaacggggcaggaaaaacaaccaccttcaagatgctgacgggggacatctcc
atctccggaggggaggccttcctaaacggatacagcatacggacagagatgagggacgtt
caccagaacatgggctactgcccgcaatttgacgccatcaacgatcttctcaccggacga
gagcatctggagttctacgccagactacgaggtgtaccggagaaagaagtcaccatggtg
gcagagtggggcatccagaagctaggcctggtcaaatactccgacaagtcagccggtacc
tacagcggagggaacaaacgcaagctctccaccgccatggctctgattggctgtcctcct
gtggtcttcctggatgagccaacgacagggatggaccccaaagccagacgcttcctgtgg
gactgcatcctgagtgtcatcaaagagggacgctcagtcatcctaacatcacacagcatg
gaggagtgtgaggccctgtgcacacgcatggccatcatggtgaatggacagtttaagtgt
ctgggcagcatccagcatcttaagagcaggttcggggacggctacactgtgatcgtgagg
gtgggcggctcgccccccgctctgggccccgtggaggagtttgtccacgagaccttcccc
ggtagcatactgaaggagaagcaccacaacacgctgcagtaccagctcccccacagcgag
ggcgctctggccagcatcttcagccatttcaccactcatcagcagaggctgggcgtggag
gactactctgtctcccagaccacactagatcaggtctttgtcaactttgcgaggtaccaa
catgaggaggacaatcaggccctgcaggcttatgacaacaatgtggacgtgtccgacgaa
atgccaatggaaactcggaactcaaccggctcaactgtaccagagagcgtctga
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integrated database retrieval system
